• Title/Summary/Keyword: cis-from

검색결과 935건 처리시간 0.031초

생명정보학을 이용한 전사인자의 하위표적유전자 분석에 관한 연구 (In silico Analysis of Downstream Target Genes of Transcription Factors)

  • 황상준;전상영;이경아
    • Clinical and Experimental Reproductive Medicine
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    • 제33권2호
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    • pp.125-132
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    • 2006
  • 연구 목적: 본 연구진은 초기 난포 발달 과정의 각 발달 단계별 난포를 분리하여 cDNA microarray를 이용한 유전자 발현 목록을 보유하고 있다. 본 연구는 이들 유전자 중에서 전사인자들의 목록에 주목하여 이들의 하위표적유전자를 생명정보학적 기법을 이용해 동정함으로써 이 후 초기난포발달의 조절 기전 연구를 위한 중요한 전사인자를 결정하고자 실시하였다. 재료 및 방법: 26개의 전사인자들에 대해서 Gene Ontology, MGI, 그리고 Entrez Gene 등의 유전자 데이터베이스 검색을 통해 전사인자들을 구성하는 도메인을 확인하였고, 전사인자 데이터베이스 ($TRANSFAC^{(R)}$ 6.0)와 진핵세포 프로모터 데이터베이스 검색을 실시하여, 전사인자의 cis-acting 및 trans-acting 하위표적유전자를 분석하였다. 결과: 26개 전사인자들에 대해서 DNA 결합 도메인과 단백질 상호작용 도메인을 확인하였다. 또 전사인자 데이터베이스와 프로모터 데이터베이스 검색으로부터 하위표적유전자에 대한 정보를 얻었다. 위와 같은 생명정보학적 분석 결과로부터 흥미로운 하위표적유전자를 갖는 3개의 전사인자로 목표를 압축할 수 있었다. 그 중에서 HNF4는 MPF 억제 조절자로 알려져 있는 Wee1 단백질 인산화 효소의 유사 유전자 프로모터 부위에 결합하는 전사인자이며, TBX2는 cdk 억제자 유전자의 발현을 억제하는 전사인자로 알려져 있어, 초기 난포발달 과정의 MPF 기능조절에 매우 중요한 역할을 할 것으로 사료된다. 결론: 본 연구는 생명정보학적 분석을 통하여 전사인자의 하위표적인자를 알아내고, 이를 이용하여 26개 전사인자 중에서 다음 연구를 위한 목표를 결정하는 접근방법을 제시했다는데 의미가 있다고 사료된다. 실제로 이렇게 결정된 전사인자들이 초기난포발달을 조절하는 분자생물학적 기전에 어떻게 관여하는지를 연구하기 위해서는 EMSA 등과 같은 실험적 증명을 통한 확인과 보충 연구가 필요할 것으로 사료된다.

흉수의 감별 전단으로 Cyfra 21-1의 진단적 가치 (Diagnostic Value of Cyfra 21-1 in Differential Diagnosis of Pleural Effusion)

  • 이학준;이관호;신경철;신창진;박혜정;문영철;이경희;정진홍;현명수;이현우
    • Tuberculosis and Respiratory Diseases
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    • 제47권1호
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    • pp.50-56
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    • 1999
  • 연구배경: 양성 질환과 악성 질환의 감별 전단으로 혈청에서의 cyfra 21-1 에 관한 연구는 많이 되고 있으나, 흉수내 cyfra 21-1 의 진단적 의의에 관한 연구는 거의 없는 실정이다. 저자들은 흉수의 원인의 감별 진단으로 흉수의 cyfra 21-1 이 진단적 의의가 있는지를 알아보기 위하여 흉수내 cyfra 21-1 을 측정하였으며 혈청내 cyfra 21-1과도 비교하여 흉수내 cyfra 21-1의 진단적 의의를 알아보았다. 연구방법: 1994년 8월부터 1996년 6월까지 삼출성 흉막염으로 내원하였던 환자 92례를 대상으로 흉수와 혈청의 cyfra 21-1을 측정하였다. 흉수의 원인은 생화학적 검사, 세포학적 검사, 그리고 기관지 내시경 등응로 확진 되었으며, 흉수의 원인 질환에 따라 흉수와 혈청 cyfra 21-1 을 비교하였으며 각각의 민감도와 특이도는 ROC 곡선으로 분석하였다. 결과: 혈청 cyfra 21-1은 폐암군에서 가장 높았으며 양성질환군 및 전이암군과 비교할 때 양성 질환군과는 통계학적 의의가 있었으나, 전이암군과는 통계학적 의의가 없었다. 폐암군의 흉수 cyfra 21-1은 혈청보다 높았고, 각 질병군을 비교하였을 때 혈청에서와 같은 통계학적 결과를 보였다. 혈청과 흉수의 cyfra 21-1의 상관관계는 양성 질환군의 경우 통계학적 의의가 없었으나(r=-0.044, p=0.866), 악성 질환군은 유의한 상관 관계가 있었다(r=0.837, p=0.001). 전체 악성질환군인 경우 혈청 cyfra 21-1의 cut off 치를 2.7ng/mL로 하였을 때 민감도와 특이도는 각각 72.7%, 72.4%였으며, 폐암군은 cut off 치를 2.39ng/mL로 하였을 때 민감도와 특이도는 각각 73.9%, 72.4%로 두 군사이의 cut off 치, 민감도, 특이도는 차이가 없었다. 흉수 cyfra 21-1은 전체 악성 질환군의 경우 cut off 치가 10.74ng/mL 일 때 민감도 및 특이도는 각각 78.7%, 69.6% 이었으며, 폐암군은 cut off 치가 22.25 ng/mL 일 때 민감도 및 특이도는 각각 81.8%, 78.7%였다. 결론: 흉수의 cyfra 21-1 치는 양성 질환보다 악성 질환에 의한 흉막염에서 유의하게 높았으며 특히 원발성 폐암에 의한 악성 흉막염에서 민감도와 특이도가 높아 원발성 폐암에 의한 흉수의 감별진단에 cyfra 21-1을 유용하게 이용할 수 있을 것으로 생각한다.

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Relationship among porcine lncRNA TCONS_00010987, miR-323, and leptin receptor based on dual luciferase reporter gene assays and expression patterns

  • Ding, Yueyun;Qian, Li;Wang, Li;Wu, Chaodong;Li, DengTao;Zhang, Xiaodong;Yin, Zongjun;Wang, Yuanlang;Zhang, Wei;Wu, Xudong;Ding, Jian;Yang, Min;Zhang, Liang;Shang, Jinnan;Wang, Chonglong;Gao, Yafei
    • Asian-Australasian Journal of Animal Sciences
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    • 제33권2호
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    • pp.219-229
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    • 2020
  • Objective: Considering the physiological and clinical importance of leptin receptor (LEPR) in regulating obesity and the fact that porcine LEPR expression is not known to be controlled by lncRNAs and miRNAs, we aim to characterize this gene as a potential target of SSC-miR-323 and the lncRNA TCONS_00010987. Methods: Bioinformatics analyses revealed that lncRNA TCONS_00010987 and LEPR have SSC-miR-323-binding sites and that LEPR might be a target of lncRNA TCONS_00010987 based on cis prediction. Wild-type and mutant TCONS_00010987-target sequence fragments and wild-type and mutant LEPR 3'-UTR fragments were generated and cloned into pmiRRB-REPORTTM-Control vectors to construct respective recombinant plasmids. HEK293T cells were co-transfected with the SSC-miR-323 mimics or a negative control with constructs harboring the corresponding binding sites and relative luciferase activities were determined. Tissue expression patterns of lncRNA TCONS_00010987, SSC-miR-323, and LEPR in Anqing six-end-white (AQ, the obese breed) and Large White (LW, the lean breed) pigs were detected by real-time quantitative polymerase chain reaction; backfat expression of LEPR protein was detected by western blotting. Results: Target gene fragments were successfully cloned, and the four recombinant vectors were constructed. Compared to the negative control, SSC-miR-323 mimics significantly inhibited luciferase activity from the wild-type TCONS_00010987-target sequence and wild-type LEPR-3'-UTR (p<0.01 for both) but not from the mutant TCONS_00010987-target sequence and mutant LEPR-3'-UTR (p>0.05 for both). Backfat expression levels of TCONS_00010987 and LEPR in AQ pigs were significantly higher than those in LW pigs (p<0.01), whereas levels of SSC-miR-323 in AQ pigs were significantly lower than those in LW pigs (p<0.05). LEPR protein levels in the backfat tissues of AQ pigs were markedly higher than those in LW pigs (p<0.01). Conclusion: LEPR is a potential target of SSC-miR-323, and TCONS_00010987 might act as a sponge for SSC-miR-323 to regulate LEPR expression.

Paraoxonase 1 (PON1) Q192R Gene Polymorphism and Cancer Risk: A Meta-Analysis Based on 30 Publications

  • Zhang, Meng;Xiong, Hu;Fang, Lu;Lu, Wei;Wu, Xun;Huang, Zhan-Sen;Wang, Yong-Qiang;Cai, Zhi-Ming;Wu, Song
    • Asian Pacific Journal of Cancer Prevention
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    • 제16권10호
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    • pp.4457-4463
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    • 2015
  • Common genetic variation Q192R in the paraoxonase 1 (PON1) gene has been considered to be implicated in the development of many cancers. Nevertheless, results from the related studies were inconsistent. To elucidate the association, we performed a meta-analysis for 8,112 cases and 10,037 controls from 32 published case-control studies. Odds ratios (ORs) with 95% confidence intervals (CIs) were used to assess the strength of the association by STATA 12.0 software. Overall, we revealed that the PON1-192R allele was associated with a reduced risk of the overall cancers. Moreover, in the stratified analysis by cancer types (breast cancer, prostate cancer, brain cancer etc.), the results showed that PON1-192R allele was associated with a decreased risk in breast cancer (R vs Q: OR=0.605, 95% CI=0.378-0.967, $P_{heterogeneity}=0.000$; RR vs QQ: OR=0.494, 95% CI=0.275-0.888, $P_{heterogeneity}=0.002$; RQ vs QQ: OR=0.465, 95% CI=0.259-0.835, $P_{heterogeneity}=0.000$; and RR+RQ vs QQ: OR=0.485, 95% CI=0.274-0.857, $P_{heterogeneity}=0.000$), and associated with prostate cancer in homozygote (RR vs QQ: OR=0.475, 95% CI=0.251-0.897, $P_{heterogeneity}=0.001$) and recessive models (RR vs RQ+QQ: OR=0.379, 95% CI=0.169-0.853, $P_{heterogeneity}=0.000$), while an increased risk was identified in lymphoma (R vs Q: OR=1.537, 95% CI=1.246-1.896, $P_{heterogeneity}=0.944$; RR vs QQ: OR=2.987, 95% CI=1.861-4.795, $P_{heterogeneity}=0.350$; RR+RQ vs QQ: OR=1.354, 95% CI=1.021-1.796, $P_{heterogeneity}=0.824$; and RR vs RQ+QQ: OR=2.934, 95% CI=1.869-4.605, $P_{heterogeneity}=0.433$), and an increased risk in prostate cancer under heterozygote comparison (RQ vs QQ: OR=1.782, 95% CI=1.077-2.950, $P_{heterogeneity}=0.000$) and dominant models (RR+RQ vs QQ: OR=1.281, 95% CI=1.044-1.573, $P_{heterogeneity}=0.056$). When subgroup analysis that performed by the control source (hospital based or population based), a decreased risk of the overall cancers was revealed by homozygote (RR vs QQ: OR=0.601, 95% CI=0.366-0.987, $P_{heterogeneity}=0.000$) and dominant models (RR vs RQ+QQ: OR= 0.611, 95% CI=0.384-0.973, $P_{heterogeneity}=0.000$) in hospital based group. Stratifying by ethnicity, a significantly reduced risk of the overall cancers under allele contrast model (R vs Q: OR=0.788, 95% CI=0.626-0.993, $P_{heterogeneity}=0.000$) was uncovered in Caucasian. In summary, these findings suggested that PON1 Q192R polymorphism was associated with a reduced risk of the overall cancers, nevertheless, it might increase cancer susceptibility of prostate and lymphoma risk. Large well-designed epidemiological studies will be continued on this issue of interest.

토마토 뿌리조직에서 분리한 이온채널의 중금속에 의한 저해 (Characterization of an Ion Channel Prepared from Tomato Roots and Inhibitory Effects by Heavy Metal Ions)

  • 신대섭;한민우;김영기
    • Applied Biological Chemistry
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    • 제47권4호
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    • pp.390-395
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    • 2004
  • 토마토 뿌리에 존재하는 이온채널의 특성을 조사하기 위하여, 마이크로솜을 분리하고 전기생리용 분석장치가 연결된 인공지질 이중막에 유입하였다. 그 결과 다섯 종류의 이온채널을 확인하였고, 이들 중 450 pS의 전기전도도를 갖는 비선택성 양이온채널을 가장 자주 관측하였다. 이 채널은 세 가지의 subconductance 상태를 보였으며, 이들의 전기전도도는 450, 257, 105 pS으로 측정되었다. 모든 subconductance 상태는 막전위 변화에 따른 전류변화가 직선적으로 나타났다. 채널의 활성은 양의 막전위에서 열림과 닫힘이 반복되는 전이상태를 보였지만, 음의 막전위에서는 평균 열림시간과 함께 열림확률도 증가하였다. 막전위 -40mV에서 측정한 채널의 열림확률은 0.83이었다. 이온선택성을 측정하기 위하여 지질막의 한쪽에만 50mM의 $K^+$ 또는 $Na^+$을 가하여 비대칭 이온조건을 만들었을 때, 두 경우 모두에서 전류역전전위는 동일하게 약 -l0mV 이동하였다. 이것은 450 pS채널이 $K^+$$Na^+$을 구별없이 통과시킴을 나타낸다. 중금속 이온들 중, $100\;{\mu}M$ 농도의 $La^{3+}$$Ba^{2+},\;Zn^{2+}$는 채널의 활성을 크게 저해하여 열림확률을 0.2 이하로 감소시켰다. 그러나, $Al^{3+}$$Cd^{2+}$은 활성을 약 20% 저해하였다. 흥미롭게도, 각각의 중금속 이온은 서로 다른 형태로 채널활성을 저해하였다. $La^{3+}$$500\;{\mu}M$ 농도에서 모든 subconductance 상태를 저해하였으나, $Zn^{2+}$는 1 mM의 농도에서도 105 pS의 subconductance 상태는 저해하지 않았다. 또한 $Cd^{2+}$은 음의 막전위에서도 채널의 열림을 long-opening상태에서 전이상태 열림으로 전환시켰다. 이러한 결과는 중금속 이온들이 채널단백질에 각각의 결합부위를 가질 수 있을 가능성을 의미하여, 식물 뿌리의 생리현상에서 450 pS 채널의 기능적 역할 뿐 만아니라 구조적 특징을 탐색할 수 있는 유용한 조절자나 탐색자로 이용될수 있음을 시사한다.

N2 병기 비소세포 폐암의 수술 전 동시화학방사선요법 (Pre-operative Concurrent Chemoradiotherapy for Stage IlIA (N2) Non-Small Cell Lung Cancer)

  • 이규찬;안용찬;박근칠;김관민;김진국;심영목;임도훈;김문경;신경환;김대용;허승재;이종헌;이경수
    • Radiation Oncology Journal
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    • 제17권2호
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    • pp.100-107
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    • 1999
  • 목적: N2 병기 비소세포폐암에서 수술 전 동시화학방사선요법과 수술을 적용하여 급성 부작용, 수술 절제가능성 및 수술 후 병기 강하율을 보고하고자 한다. 대상 및 방법: 1997년 5월부터 1998년 6월까지 삼성서울병원에서 N2 병기 비소세포폐암으로 진단 받은 15명의 환자들을 대상으로 하였다. 환자들 연령의 중앙값은 61세(45~67세), 남녀 성비는 12:3 이었으며 세포 조직형은 편평상피암종이 11명, 선암종이 4명이었다. 치료 전 임상적 T병기는 T1, T2, 및 T3가 각각 2명, 12명, 및 1명씩이었으며 모든 환자들이 N2 병기로서 이중 10명은 종격동내시경을 통한 조직생검을 통하여 종격동 림프절 전이를 확인하였고 나머지 5명은 흉부 CT 영상 상 종격동 림프절 전이가 강력히 의심된 경우였다. 수술 전 방사선치료는 흉부 CT영상을 기준으로 하여 원발 병소, 동측 폐문부 및 종격동 림프절에 대하여 10MV X-선을 이용하여 45Gy를 5주간에 걸쳐서 조사하도록 계획하였다(일회 선량 1.8 Gy, 일일 1회, 주 5회). 수술 전 복합화학요법은 cis-Platin(100mg/m$^{2}$)을 제 1일에 급속 정주하고 Etoposide(50mg/m$^{2}$/day)를 제 1일부터 제 14일까지 경구로 2회에 분복하도록 하였으며, 첫번째 화학요법은 방사선치료의 시작일에, 두 번째 화학요법은 4주 후에 시행하도록 계획하였다. 수술은 방사선-복합화학요법의 완료 3주째에 흉부 CT 영상을 얻어 병변의 진행이나 원격전이의 소견이 없음을 확인한 후 시행하였다. 결과 : 방사선치료는 15명 모두에서 계획된 목표 선량 45Gy를 조사하였으며, 복합 화학요법은 11명의 환자에서는 계획대로 2회를, 나머지 4명에서는 1회만 시행하였다. 본 연구의 치료 방법과 관련하여 1명의 환자가 수술 15일만에 급성 호흡부전으로 사망하였으며 입원치료를 요하는 정도의 급성 부작용의 발현은 방사선폐렴과 호중구 감소로 인한 발열이 각각 1명, 2명이었다. 급성 식도염은 RTOG grade 1이 9명, grade 2가 3명으로 대체로 경미한 편이었다. 총 26회의 복합 화학요법과 관련된 급성 부작용으로 grade 3 이상의 백혈구 감소증, 혈소판 감소증, 및 빈혈이 각각 26.9%, 7.7%, 3.8%에서 나타났다. 수술을 시행한 환자는 13명으로 이 중 12명에서 근치적 절제술이 가능하여 수술절제율은 92.3%(12/13) 이었다. 한 명에서는 수술 시 늑막 전이가 확인되어 절제 수술을 시행하지 못하였다. 다른 2명은 수술을 거부하였다. 수술 후 병리학적 T병기는 T0, T1, 및 T2가 각각 3명, 6명, 및 3명이었으며 N병기는 N0, N1, 및 N2가 각각 8명, 1명, 및 3명이었다. 병리학적 완전 관해는 모두 3명의 환자에서(27.3%) 확인되었으며, 수술 전 임상적 병기와 비교하여 볼 때 병기 강하, 불변, 상승이 각각 8명(61.5%), 4명(30.8%), 1명(7.7%) 이었다. 결론 : N2 병기 비소세포폐암에 대한 동시화학방사선요법은 대체로 만족할 만한 결과를 얻을 수 있었으나 보다 많은 환자들을 대상으로 하는 장기간의 추적 관찰을 요한다.

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Field Studios of In-situ Aerobic Cometabolism of Chlorinated Aliphatic Hydrocarbons

  • Semprini, Lewts
    • 한국지하수토양환경학회:학술대회논문집
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    • 한국지하수토양환경학회 2004년도 총회 및 춘계학술발표회
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    • pp.3-4
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    • 2004
  • Results will be presented from two field studies that evaluated the in-situ treatment of chlorinated aliphatic hydrocarbons (CAHs) using aerobic cometabolism. In the first study, a cometabolic air sparging (CAS) demonstration was conducted at McClellan Air Force Base (AFB), California, to treat chlorinated aliphatic hydrocarbons (CAHs) in groundwater using propane as the cometabolic substrate. A propane-biostimulated zone was sparged with a propane/air mixture and a control zone was sparged with air alone. Propane-utilizers were effectively stimulated in the saturated zone with repeated intermediate sparging of propane and air. Propane delivery, however, was not uniform, with propane mainly observed in down-gradient observation wells. Trichloroethene (TCE), cis-1, 2-dichloroethene (c-DCE), and dissolved oxygen (DO) concentration levels decreased in proportion with propane usage, with c-DCE decreasing more rapidly than TCE. The more rapid removal of c-DCE indicated biotransformation and not just physical removal by stripping. Propane utilization rates and rates of CAH removal slowed after three to four months of repeated propane additions, which coincided with tile depletion of nitrogen (as nitrate). Ammonia was then added to the propane/air mixture as a nitrogen source. After a six-month period between propane additions, rapid propane-utilization was observed. Nitrate was present due to groundwater flow into the treatment zone and/or by the oxidation of tile previously injected ammonia. In the propane-stimulated zone, c-DCE concentrations decreased below tile detection limit (1 $\mu$g/L), and TCE concentrations ranged from less than 5 $\mu$g/L to 30 $\mu$g/L, representing removals of 90 to 97%. In the air sparged control zone, TCE was removed at only two monitoring locations nearest the sparge-well, to concentrations of 15 $\mu$g/L and 60 $\mu$g/L. The responses indicate that stripping as well as biological treatment were responsible for the removal of contaminants in the biostimulated zone, with biostimulation enhancing removals to lower contaminant levels. As part of that study bacterial population shifts that occurred in the groundwater during CAS and air sparging control were evaluated by length heterogeneity polymerase chain reaction (LH-PCR) fragment analysis. The results showed that an organism(5) that had a fragment size of 385 base pairs (385 bp) was positively correlated with propane removal rates. The 385 bp fragment consisted of up to 83% of the total fragments in the analysis when propane removal rates peaked. A 16S rRNA clone library made from the bacteria sampled in propane sparged groundwater included clones of a TM7 division bacterium that had a 385bp LH-PCR fragment; no other bacterial species with this fragment size were detected. Both propane removal rates and the 385bp LH-PCR fragment decreased as nitrate levels in the groundwater decreased. In the second study the potential for bioaugmentation of a butane culture was evaluated in a series of field tests conducted at the Moffett Field Air Station in California. A butane-utilizing mixed culture that was effective in transforming 1, 1-dichloroethene (1, 1-DCE), 1, 1, 1-trichloroethane (1, 1, 1-TCA), and 1, 1-dichloroethane (1, 1-DCA) was added to the saturated zone at the test site. This mixture of contaminants was evaluated since they are often present as together as the result of 1, 1, 1-TCA contamination and the abiotic and biotic transformation of 1, 1, 1-TCA to 1, 1-DCE and 1, 1-DCA. Model simulations were performed prior to the initiation of the field study. The simulations were performed with a transport code that included processes for in-situ cometabolism, including microbial growth and decay, substrate and oxygen utilization, and the cometabolism of dual contaminants (1, 1-DCE and 1, 1, 1-TCA). Based on the results of detailed kinetic studies with the culture, cometabolic transformation kinetics were incorporated that butane mixed-inhibition on 1, 1-DCE and 1, 1, 1-TCA transformation, and competitive inhibition of 1, 1-DCE and 1, 1, 1-TCA on butane utilization. A transformation capacity term was also included in the model formation that results in cell loss due to contaminant transformation. Parameters for the model simulations were determined independently in kinetic studies with the butane-utilizing culture and through batch microcosm tests with groundwater and aquifer solids from the field test zone with the butane-utilizing culture added. In microcosm tests, the model simulated well the repetitive utilization of butane and cometabolism of 1.1, 1-TCA and 1, 1-DCE, as well as the transformation of 1, 1-DCE as it was repeatedly transformed at increased aqueous concentrations. Model simulations were then performed under the transport conditions of the field test to explore the effects of the bioaugmentation dose and the response of the system to tile biostimulation with alternating pulses of dissolved butane and oxygen in the presence of 1, 1-DCE (50 $\mu$g/L) and 1, 1, 1-TCA (250 $\mu$g/L). A uniform aquifer bioaugmentation dose of 0.5 mg/L of cells resulted in complete utilization of the butane 2-meters downgradient of the injection well within 200-hrs of bioaugmentation and butane addition. 1, 1-DCE was much more rapidly transformed than 1, 1, 1-TCA, and efficient 1, 1, 1-TCA removal occurred only after 1, 1-DCE and butane were decreased in concentration. The simulations demonstrated the strong inhibition of both 1, 1-DCE and butane on 1, 1, 1-TCA transformation, and the more rapid 1, 1-DCE transformation kinetics. Results of tile field demonstration indicated that bioaugmentation was successfully implemented; however it was difficult to maintain effective treatment for long periods of time (50 days or more). The demonstration showed that the bioaugmented experimental leg effectively transformed 1, 1-DCE and 1, 1-DCA, and was somewhat effective in transforming 1, 1, 1-TCA. The indigenous experimental leg treated in the same way as the bioaugmented leg was much less effective in treating the contaminant mixture. The best operating performance was achieved in the bioaugmented leg with about over 90%, 80%, 60 % removal for 1, 1-DCE, 1, 1-DCA, and 1, 1, 1-TCA, respectively. Molecular methods were used to track and enumerate the bioaugmented culture in the test zone. Real Time PCR analysis was used to on enumerate the bioaugmented culture. The results show higher numbers of the bioaugmented microorganisms were present in the treatment zone groundwater when the contaminants were being effective transformed. A decrease in these numbers was associated with a reduction in treatment performance. The results of the field tests indicated that although bioaugmentation can be successfully implemented, competition for the growth substrate (butane) by the indigenous microorganisms likely lead to the decrease in long-term performance.

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Lack of Associations between Genetic Polymorphisms in GSTM1, GSTT1 and GSTP1 and Pancreatic Cancer Risk: A Multi-Institutional Case-Control Study in Japan

  • Yamada, Ikuhiro;Matsuyama, Masato;Ozaka, Masato;Inoue, Dai;Muramatsu, Yusuke;Ishii, Hiroshi;Junko, Ueda;Ueno, Makoto;Egawa, Naoto;Nakao, Haruhisa;Mori, Mitsuru;Matsuo, Keitaro;Nishiyama, Takeshi;Ohkawa, Shinichi;Hosono, Satoyo;Wakai, Kenji;Nakamura, Kozue;Tamakoshi, Akiko;Kuruma, Sawako;Nojima, Masanori;Takahashi, Mami;Shimada, Kazuaki;Yagyu, Kiyoko;Kikuchi, Shogo;Lin, Yingsong
    • Asian Pacific Journal of Cancer Prevention
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    • 제15권1호
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    • pp.391-395
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    • 2014
  • Background: We aimed to evaluate the role of genetic polymorphisms in tobacco carcinogen-metabolizing genes and their interactions with smoking in a hospital-based case-control study of Japanese subjects. Materials and Methods: We examine the associations of pancreatic cancer risk with genetic polymorphisms in GSTM1, GSTT1 and GSTP1, phase II enzymes that catalyze the conjugation of toxic and carcinogenic electrophilic molecules. The study population consisted of 360 patients and 400 control subjects, who were recruited from several medical facilities in Japan. Unconditional logistic regression methods were used to estimate odds ratios (ORs) and 95% confidence intervals (CIs) for the associations between genotypes and pancreatic cancer risk. Results: Among the control subjects, the prevalence of the GSTM1-null genotype and the GSTT1-null genotype was approximately 56% and 48%, respectively. Cases and controls were comparable in terms of GSTM1 and GSTT1 genotype distributions. Neither of the deleted polymorphisms in GSTM1 and GSTT1 was associated with the risk of pancreatic cancer, with an age- and sex-adjusted OR of 0.99 (95%CI: 0.74-1.32) for the GSTM1-null genotype, and 0.98 (95%CI: 0.73-1.31) for the GSTT1-null genotype. The OR was 0.97 (95%CI: 0.64-1.47) for individuals with the GSTM1 and GSTT1-null genotypes compared with those with the GSTM1 and GSTT1- present genotypes. No synergistic effects of smoking or GST genotypes were observed. Conclusions: Our results indicate no overall association between the GSTM1 and GSTT1 deletion polymorphisms and pancreatic cancer risk in the Japanese subjects in our study.

(n,γ)99Mo를 이용한 99Mo-99mTc발생기의 유용성 평가 (The Evaluation of Usefulness of 99Mo-99mTc Generator Using(n,γ)99Mo Developed by Korea Atomic Energy Research)

  • 서한경;김정호;심철민;김병철;최도철;권용주;박영순;김동윤
    • 핵의학기술
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    • 제17권2호
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    • pp.48-52
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    • 2013
  • 본 연구의 목적은 한국원자력연구원에서 개발되고 있는 $(n,{\gamma})^{99}Mo/^{99m}Tc$발생기의 성능을 평가하고 개선방안을 연구함으로써 의학적 유효성을 확보하는 것이다. 이를 위해 본 연구에서는 한국원자력연구원에서 제조된 $(n,{\gamma})^{99}Mo/^{99m}Tc$발생기를 이용하여 $^{99m}Tc$ 용출 방사능량 시험, $^{99m}Tc$정도평가, $^{99m}Tc-DPD$, $^{99m}Tc-tetrafomin$ 표지수율 및 동물영상 평가를 진행하였다. 용출 방사능양은 상용 제품에 동일 용량에 비해 다소 적었으나, 발열성 물질 검사를 제외한 전영역의 $^{9m}Tc$정 도평가 실험에서 정상범위를 나타냈다. 표지 수율도 90% 이상 높은 수율을 관찰할 수 있었다. $^{99m}Tc-HDP$$^{99m}Tc-DPD$를 주입한 쥐 영상에서 한국 원자력 연구원 발생기는 모두 간과 비장의 집적을 관찰할 수 있었고 간과 비장은 상용발생기 일부에서도 관찰되었다. 이에 원자력 연구원 발생기는 발열성 물질을 제거한다면 비상시 훌륭한 대체 발생기 역할을 수행할 수 있을거라 생각한다.

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Associations Between Three Polymorphisms in the Interleukin-4 Receptor Gene and Risk of Cancer: a Meta-analysis

  • Wang, Jia-Yi;Zhou, Yu-Qiao;Li, Xiao-Xu;Jin, Xin;Wang, Li-Li;Lei, Lei;Zhou, Yu;Lu, Jiang;Zeng, Xin;Dan, Hong-Xia;Liao, Ga;Chen, Qian-Ming
    • Asian Pacific Journal of Cancer Prevention
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    • 제13권12호
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    • pp.6227-6232
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    • 2012
  • Interleukin-4 receptor (IL-4R) gene single nucleotide polymorphisms (SNPs) are implicated in cancer development. However, results from the published reports have remained inconclusive. The objective of this study was to conduct a meta-analysis investigating the association between polymorphisms in IL-4R gene and cancer risk. Pubmed, EMBASE and China National Knowledge Infrastructure (CNKI) were searched for case-control studies published up to October 30, 2012 that investigated IL-4R polymorphisms and cancer risk. Odds ratios (ORs) and 95% confidence intervals (CIs) were used to evaluate the strength of any associations. Three IL-4R polymorphisms (Q576R, rs1801275; I75V, rs1805010; S503P, rs1805015) in 21 case-control studies were analyzed. Our meta-analysis indicated that these three polymorphisms are not associated with cancer risk when all studies were pooled together. In the subgroup analysis by tumor site, the results showed that Q576R G allele carriers were associated with a significantly decreased cervical cancer risk (recessive model: OR = 0.77, 95%CI = 0.60-0.98; homozygote comparison: OR = 0.76, 95%CI = 0.58-0.98). I75V G allele carriers were associated with a decreased risk of renal cancer (dominant model = 0.71, 95%CI = 0.57-0.89, heterozygote comparison: OR = 0.69, 95%CI = 0.55-0.87). When stratified by ethnicity, Q576R G allele carriers were associated with a decreased cancer risk in Caucasians (dominant model: OR = 0.90, 95%CI = 0.83-0.98; heterozygote comparison: OR = 0.89, 95%CI = 0.82-0.98). I75V G allele carriers were associated with a decreased cancer risk in Asians (heterozygote comparison: OR = 0.76, 95%CI = 0.62-0.94). S503P C allele carriers were also associated with a decreased cancer risk in Asians (CC VS TT: OR = 0.29, 95%CI = 0.08-0.99). Our results suggest that Q576R, I75V and S503P may be associated with a decreased cancer risk for certain types of cancers and in some specific ethnic groups. Future case-control studies with large sample size are needed to evaluate these associations in detail.