• Microbiology and Biotechnology Letters
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• 제42권4호
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• pp.377-385
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• 2014

In this study, a wastewater treatment system for hypersaline wastewater utilizing the Hypersaline Wastewater Treatment Community (HWTC) has been developed. The hypersaline wastewater treatment efficiency and microbial community of the HWTC were investigated. The average removal efficiencies of chemical oxygen demand were 84% in an HRT of 2.5 days. Microbial community analysis, by denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA gene fragments and 16S rRNA gene clone library, revealed community diversity. The 16S rRNA gene analysis of dominant microbial bacteria in 4% hypersaline wastewater confirmed the presence of Halomonas sp. and Paenibacillus sp. Phylogenetic analysis suggested that the taxonomic affiliation of the dominant species in the HWTC was ${\gamma}$-proteobacteria and firmicutes. These results indicate the possibility that an appropriate hypersaline wastewater treatment system can be designed using acclimated sludge with a halophilic community.

• Journal of Microbiology and Biotechnology
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• 제30권11호
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• pp.1688-1696
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• 2020

Soil physical and chemical characteristics, soil potential denitrification rates (PDR), community composition and nirK-, nirS- and nosZ-encoding denitrifiers were studied by using MiSeq sequencing, quantitative polymerase chain reaction (qPCR), and terminal restriction fragment polymorphism (T-RFLP) technologies base on short-term (5-year) tillage field experiment. The experiment included four tillage treatments: conventional tillage with crop residue incorporation (CT), rotary tillage with crop residue incorporation (RT), no-tillage with crop residue retention (NT), and rotary tillage with crop residue removed as control (RTO). The results indicated that soil organic carbon, total nitrogen and NH₄⁺-N contents were increased with CT, RT and NT treatments. Compared with RTO treatment, the copies number of nirK, nirS and nosZ in paddy soil with CT, RT and NT treatments were significantly increased. The principal coordinate analysis indicated that tillage management and crop residue returning management were the most and the second important factors for the change of denitrifying bacteria community, respectively. Meanwhile, this study indicated that activity and community composition of denitrifiers with CT, RT and NT treatments were increased, compared with RTO treatment. This result showed that nirK, nirS and nosZ-type denitrifiers communities in crop residue applied soil had higher species diversity compared with crop residue removed soil, and denitrifying bacteria community composition were dominated by Gammaproteobacteria, Deltaproteobacteria, and Betaproteobacteria. Therefore, it is a beneficial practice to increase soil PDR level, abundance and community composition of nitrogen-functional soil microorganism by combined application of tillage with crop residue management.

• Korean Journal of Environment and Ecology
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• 제29권1호
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• pp.29-45
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• 2015

Water chemistry and fish community, based on fish compositions and ecological characteristics(trophic/tolerance guilds and condition factor), were compared in Gucheon Reservoir($G_cR$) and Yeoncho Reservoir($Y_cR$). Chemical parameters of water quality such as BOD, COD, nutrient(N, P) and suspended solids indicated that water quality was better in the $Y_cR$ than $G_cR$, and the temporal variability in seasonal and interannual patterns were greater in the $Y_cR$. The greater variability was mainly attributed to intense dilutions of reservoir water by Asian monsoon rain during July-August. Fish guild analysis indicated that species diversity was higher in the $G_cR$ than the $Y_cR$, and that the proportion of tolerant and omnivore species were greater in the $Y_cR$. Regression analysis of body weight-total length showed that the regression coefficient(b value) was lower in the $G_cR$(2.15 ~ 2.40) than the $Y_cR$(2.59 ~ 3.14). Condition factor(K) of fish against the total length showed negative slope of Zacco temminckii, Carassius auratus, Pseudorasbora parva and Rhinogobius brunneus population in the $G_cR$, and a positive slope of Carassius auratus and Rhinogobius brunneus population in $Y_cR$. Overall, our data suggest that the growth of the fish populations, based on the length-weight relations and condition factor, reflected the trophic regime of nutrients and organic matter.

• Journal of the Korean Institute of Landscape Architecture
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• 제14권2호
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• pp.27-42
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• 1986

The vegetation structure in the Hoo - Won, Changduk Palace in Seoul was analysed on 10 sites sampled for understanding structure of natural vegetation. The main vegetational survey was conducted during July, 1985 and actual vegetaion and degree of natural vegetaion types were surveyed additionally. The result summarized of this research are as follows. 1) The physical - chemical conditions of soil showed middle class. This might be derived by short succession period from Pine forest to decidious broadleaf forest and artificial impact by human intervention. 2) When considering dominance species by crown story, Quercus aliena was a dominant species over all site and Castanea crenata, Prunus sargentii and Quercus variabilis appeared as a dominant species locally at upper story. Styrax story and Rhododendron mucronulatum, Styrax japonica, Stephanandra incisa and Lespedeza spp. at lower story. 3) The distances kept by trees per crown story are as follows. The mean distances between trees were 4.5-5.5m at upper story, 2.8-3.3m at middle story. On the other hand, the mean distances between dominant species were 6-8m at upper story, 5-9m at middle story. 4) The vegetation in this area was not developed yet into dominant species community according to the similarity analysis. The natural vegetation was dominated by Quercus spp. especially Quercus aliena according to the analysis of species diversity, relative dominance by story and DBH class. On the orther hand, succession to climax stage dominated by shade tolerent species will take a long time due to little appearance of shade tolerence species by previous heavy artificial impacts on understory species. 5) Quercus forest took possesion of 71.3%(27.37ha) of total forest area when considering the actual vegetation and especially Quercus aliena community covered 53.2%(15.21ha). Carpinus laxiflora community, one of the climax species in temperate zone, took possesion of 1.0%(0.3ha) and Pine densiflora was almost disappeared due to species competition. 6) According to the degree of natural vegetation types, the possession of degree of 6-9 was 60.6% and degree of 7-8, substitute vegetation, was 15.5%. The possesion of degree of 9 which consists of over 50 years old trees simliar to natural vegetaion was the highest, 43.1% in this area. Therefore continuous protection in this area of degree of 9 should be recommended.

• Economic and Environmental Geology
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• 제21권3호
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• pp.223-234
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• 1988

A large number of gold and/or silver-bearing quartz veins occur in or near Mesozoic granite batholith elongated in a NE-SW direction within the Chungcheong Province. Precambrian schists and gneisses, and Jurassic and Cretaceous granitic rocks serve as hosts for gold and/or silver deposits. On the basis of Ag/Au total production and ore grade ratio, 15 mines may be divided into three major groups: gold-dominant deposits, gold-silver deposits, and silver-dominant deposits. The chemical composition of electrum from skarn deposit (Geodo mine), alaskite-type deposit (Geumjeong mine) and 15 vein deposits was summarized. It was found that the Au content of electrum for vein deposits ranging from 5.2 to 86.5 is lower than that for skarn and alaskite deposits. Among 15 vein deposits, the composition of electrum associated with pyrrhotite is relatively high and has a narrow range of 40.8 to 86.5 atomic % Au, but the Au content of electrum with pyrite is in range of 5.2 to 82.8 atomic %, and is clearly lower than that with pyrrhotite. The grouping of ages for these mines indicates that gold and/or silver mineralizations occurred during two periods in the Mesozoic. Daebo igneous activities are restricted to gold mineralization in the range of 158 to 133 Ma, whereas Bulgugsa igneous activities are related to gold and/or silver mineralization ranging from 108 to 71 Ma. Generally speaking, Jurassic gold-dominant veins have many common characteristics; notably prominent association with pegmatites, simply massive vein morphology, high fineness in the ore concentrates, rarity of silver minerals, and a distinctively simple mineralogy, including sphalerite, galena, chalcopyrite, pyrrhotite and/or pyrite. Although individual deposits exhibit widely differing diversity, Cretaceous gold-silver and silver-dominant veins are characterized by features such as complex vein, low to medium fineness in the ore concentrates and abundance of silver minerals including Ag sulfosalts, Ag sulfides, Ag tellurides and native silver.

• Molecules and Cells
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• 제43권1호
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• pp.86-95
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• 2020

The red-crowned crane (Grus japonensis) is an endangered, large-bodied crane native to East Asia. It is a traditional symbol of longevity and its long lifespan has been confirmed both in captivity and in the wild. Lifespan in birds is known to be positively correlated with body size and negatively correlated with metabolic rate, though the genetic mechanisms for the red-crowned crane's long lifespan have not previously been investigated. Using whole genome sequencing and comparative evolutionary analyses against the grey-crowned crane and other avian genomes, including the long-lived common ostrich, we identified redcrowned crane candidate genes with known associations with longevity. Among these are positively selected genes in metabolism and immunity pathways (NDUFA5, NDUFA8, NUDT12, SOD3, CTH, RPA1, PHAX, HNMT, HS2ST1, PPCDC, PSTK CD8B, GP9, IL-9R, and PTPRC). Our analyses provide genetic evidence for low metabolic rate and longevity, accompanied by possible convergent adaptation signatures among distantly related large and long-lived birds. Finally, we identified low genetic diversity in the red-crowned crane, consistent with its listing as an endangered species, and this genome should provide a useful genetic resource for future conservation studies of this rare and iconic species.

• ALGAE
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• 제36권4호
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• pp.315-326
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• 2021

Ion channels are membrane protein complexes mediating passive ion flux across the cell membranes. Every organism has a certain set of ion channels that define its physiology. Dinoflagellates are ecologically important microorganisms characterized by effective physiological adaptability, which backs up their massive proliferations that often result in harmful blooms (red tides). In this study, we used a bioinformatics approach to identify homologs of known ion channels that belong to 36 ion channel families. We demonstrated that the versatility of the dinoflagellate physiology is underpinned by a high diversity of ion channels including homologs of animal and plant proteins, as well as channels unique to protists. The analysis of 27 transcriptomes allowed reconstructing a consensus ion channel repertoire (channelome) of dinoflagellates including the members of 31 ion channel families: inwardly-rectifying potassium channels, two-pore domain potassium channels, voltage-gated potassium channels (K_v), tandem K_v, cyclic nucleotide-binding domain-containing channels (CNBD), tandem CNBD, eukaryotic ionotropic glutamate receptors, large-conductance calcium-activated potassium channels, intermediate/small-conductance calcium-activated potassium channels, eukaryotic single-domain voltage-gated cation channels, transient receptor potential channels, two-pore domain calcium channels, four-domain voltage-gated cation channels, cation and anion Cys-loop receptors, small-conductivity mechanosensitive channels, large-conductivity mechanosensitive channels, voltage-gated proton channels, inositole-1,4,5-trisphosphate receptors, slow anion channels, aluminum-activated malate transporters and quick anion channels, mitochondrial calcium uniporters, voltage-dependent anion channels, vesicular chloride channels, ionotropic purinergic receptors, animal volage-insensitive cation channels, channelrhodopsins, bestrophins, voltage-gated chloride channels H⁺/Cl^- exchangers, plant calcium-permeable mechanosensitive channels, and trimeric intracellular cation channels. Overall, dinoflagellates represent cells able to respond to physical and chemical stimuli utilizing a wide range of G-protein coupled receptors- and Ca²⁺-dependent signaling pathways. The applied approach not only shed light on the ion channel set in dinoflagellates, but also provided the information on possible molecular mechanisms underlying vital cellular processes dependent on the ion transport.

• Korean journal of applied entomology
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• 제60권1호
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• pp.145-154
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• 2021

Integrated pest management system in Korean apple has significantly advanced for last few decades. However harmful effects of pesticides threats the ecosystem services of natural enemies and pollinators. Apple require cross-pollination and Insect pollination with diversity and abundance is one of the keys to profitable apple production in quantity and quality as well. Thus crop protection tools are to be administered in harmony to meet the pest suppression and protection of beneficial organisms such as natural enemies and pollinators. Adding onto the established IPM system, integrated pollinator-pest management (IPPM) concept is proposed as the future direction of apple IPM. For this, ecological enginnering of creating habitats for pollinators, landscape management and agroecosytem diversification as well as selective soft pesticide uses on time guided by pest monitoring and phenologyand targeted delivery are further proposed. Recent shift of agroecosystem from climate change and new pest outbreaks require new paradigm of pest management for sustainable agricultural production.

• Journal of Applied Biological Chemistry
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• 제63권4호
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• pp.429-437
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• 2020

This study aimed to investigate the change in physicochemical properties and lactic acid bacterial communities during kimchi fermentation at different temperatures (8, 15, and 25 ℃) using two molecular genetics approaches, multiplex polymerase chain reaction and 16S rRNA gene sequencing. The pH during fermentation at 8, 15, and 25 ℃ decreased from 6.17 on the initial fermentation day to 3.92, 3.79, and 3.48 after 54, 30, and 24 days of fermentation, respectively, while the acidity increased from 0.24% to 1.12, 1.35, and 1.54%, respectively. In particular, the levels of lactic acid increased from 3.74 g/L on the initial day (day 0) to 14.43, 20.60, and 27.69 g/L during the fermentation after 24, 18, and 12 days at 8, 15, and 25 ℃, respectively, after that the lactic acid concentrations decreased slowly. The predominance of lactic acid bacteria (LAB) in the fermented kimchi was dependent on fermentation stage and temperature: Lactobacillus sakei appeared during the initial stage and Leuconsotoc mesenteroides was observed during the optimum-ripening stage at 8, 15, and 25 ℃. Lac. sakei and Lactobacillus plantarum grew rapidly in kimchi produced at 8, 15, and 25 ℃. In addition, Weissella koreensis first appeared at days 12, 9, and 6 at 8, 15, and 25 ℃ of fermentation, respectively. This result suggests that LAB population dynamics are rather sensitive to environmental conditions, such as pH, acidity, salinity, temperature, and chemical factors including free sugar and organic acids.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• 제26권3호
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• pp.277-289
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• 2021

Among various data types obtained from the ocean, the quality controls for abiotic data collected from chemical, physical, and geological field surveys haves already been partially established. Due to the difficulties in standardization of the data collections and basic analyses, however, the quality controls of biotic data are in its early stage. For marine fish, the necessity of quality control is more demanded due to the wide range of data usage, but there are currently no consistent quality control guidelines because of the diversity and scope of data types derived from species-specific and age-specific information throughout various habitats. In this paper, we provide examples of marine fish data utilization and also show methods of the marine fish data collection, limitations of the data collection methods, and suggestions for improving the marine fish data quality. We hope this paper will help to establish the direction of quality control for marine fish data from both fishery-dependent and fishery-independent surveys in Korea in the near future.