• 제목/요약/키워드: cell library

검색결과 571건 처리시간 0.024초

Identification of Chinese Cabbage Sentrin as a Suppressor of Bax-Induced Cell Death in Yeast

  • Sawitri, Widhi Dyah;Slameto, Slameto;Sugiharto, Bambang;Kim, Kyung-Min
    • Journal of Microbiology and Biotechnology
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    • 제22권5호
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    • pp.600-606
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    • 2012
  • Studies into the cell death program termed apoptosis have resulted in new information regarding how cells control and execute their own demise, including insights into the mechanism by which death-preventing factors can inhibit Bax-induced caspase activation. We investigated high temperature stress-induced cell death in Brassica rapa. Using a yeast functional screening from a Brassica rapa cDNA library, the BH5-127 EST clone encoding an apoptotic suppressor peptide was identified. However, a phylogenic tree showed that BH5-127 clusters within a clade containing SUMO-1 (Small Ubiquitin-like Modifier-1). BH5-127 was confirmed similar to have function to SUMO-1 as Fas suppression. Expression of BH5-127 showed that substantial suppression of cell death survived on SD-galactose-$Leu^-$-$Ura^-$ medium. The results suggest that BrSE ($\underline{B}$rassica rapa $\underline{S}$entrin $\underline{E}$ST, BH5-127) is one of the important regulatory proteins in programming cell death, especially in the seedling stage of Chinese cabbage.

Knowledge Base Associated with Autism Construction Using CRFs Learning

  • Yang, Ronggen;Gong, Lejun
    • Journal of Information Processing Systems
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    • 제15권6호
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    • pp.1326-1334
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    • 2019
  • Knowledge base means a library stored in computer system providing useful information or appropriate solutions to specific area. Knowledge base associated with autism is the complex multidimensional information set related to the disease autism for its pathogenic factor and therapy. This paper focuses on the knowledge of biological molecular information extracted from massive biomedical texts with the aid of widespread used machine learning methods. Six classes of biological molecular information (such as protein, DNA, RNA, cell line, cell component, and cell type) are concerned and the probability statistics method, conditional random fields (CRFs), is utilized to discover these knowledges in this work. The knowledge base can help biologists to etiological analysis and pharmacists to drug development, which can at least answer four questions in question-answering (QA) system, i.e., which proteins are most related to the disease autism, which DNAs play important role to the development of autism, which cell types have the correlation to autism and which cell components participate the process to autism. The work can be visited by the address http://134.175.110.97/bioinfo/index.jsp.

Design of Asynchronous Library and Implementation of Interface for Heterogeneous System

  • Jung, Hwi-Sung;Lee, Joon-Il;Lee, Moon-Key
    • 대한전자공학회:학술대회논문집
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    • 대한전자공학회 2000년도 하계종합학술대회 논문집(2)
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    • pp.221-225
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    • 2000
  • We designed asynchronous event logic library with 0.25$\mu\textrm{m}$ CMOS technology and interface chip for heterogeneous system with high-speed asynchronous FIFO operating at 1.6㎓. Optimized asynchronous standard cell layouts and Verilog models are designed for top-down design methodology. A method for mitigating a design bottleneck when it comes to tolerate clock skew is described. This communication scheme using clock control circuits, which is used for the free of synchronization failures, is analyzed and implemented. With clock control circuit and FIFO, high-speed communication between synchronous modules operating at different clock frequencies or with asynchronous modules is performed. The core size of implemented high-speed 32bit-interface chip for heterogeneous system is about 1.1mm ${\times}$ 1.1mm.

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Identification of a Novel MOPT Gene in Human and Mouse Adult Testis

  • Park, Yun-Jung;Kang, Sung-Jo;Kim, Jin-Hoi
    • 한국동물번식학회:학술대회논문집
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    • 한국동물번식학회 2004년도 춘계학술발표대회
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    • pp.195-195
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    • 2004
  • To discover germ cell-specific transcripts, we prepared a cDNA library from adult testes of 35-day old mice and subtracted it with mRNA from the testes of juvenile mice. Real-time RT-PCR analysis indicated that 42 cDNA clones in the subtracted library were expressed more intensely in the adult testes than in the juvenile testes. One clone identified by subtraction is expressed preferentially in the late spermatid and is located on chromosome 17E3 in mouse and 2p22 in human. (omitted)

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PV 시스템에 대한 PSPICE 모델링과 시뮬레이션 (PSPICE Modelling and Simulation about PV System)

  • 백동현;송호빈;정형용
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 2009년도 춘계학술대회 논문집 전기설비전문위원
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    • pp.163-165
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    • 2009
  • Many photovoltaic (PV) systems are being developed and installed. For a PV developer, simulations are required before the experimental testing. However, most simulation tools do not offer data libraries for PV systems, so that some Institutes who try to use such software will be in difficulty. In this paper, simulations of performance and stability have been carried out using the software PSPICE. In this paper, the modelling of solar cell arrays, photovoltaic modules, PV generators, batteries and drive systems is carried out based on mathematical equivalence circuits and available data, and the models are converted into a data library for PSPICE that is user friendly. System variations can be modeled by simple parameter variation. To verify the accuracy of the simulation library, various models were run and compared to known systems.

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Design of Self-Timed Standard Library and Interface Circuit

  • Jung, Hwi-Sung;Lee, Moon-Key
    • 대한전자공학회:학술대회논문집
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    • 대한전자공학회 2000년도 ITC-CSCC -1
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    • pp.379-382
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    • 2000
  • We designed a self-timed interface circuit for efficient communication in IP (Intellectual Property)-based system with high-speed self-timed FIFO and a set of self-timed event logic library with 0.25um CMOS technology. Optimized self-timed standard cell layouts and Verilog models are generated for top-down design methodology. A method for mitigating a design bottleneck when it comes to tolerate clock skew is described. With clock control method and FIFO, we implemented high-speed 32bit-interface chip for self-timed system, which generated maximum system clock is 2.2GHz. The size of the core is about 1.1mm x 1.1mm.

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디지틀 신호처리용 실리콘 컴파일러를 위한 사용자 툴 개발 (The Development of the User Interface Tool for DSP Silicon Compiler)

  • 이문기;장호랑;김종현;이승호;이광엽
    • 전자공학회논문지A
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    • 제29A권9호
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    • pp.76-84
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    • 1992
  • The DSP silicon compiler consists of language compiler, module generator, placement tool, router, layout generation tools, and simulator. In this paper, The language compiler, the module generator, placement tool, and simulator were developed and provided for the system designer. The language compiler translates the designer's system description language into the intermediate form file. The intermediate form file expresses the interconnections and specifications of the cells in the cell library. The simulator was developed and provided for the behavioral verification of the DSP system. For its implementation, the event-driven technique and the C$^{++}$ task library was used. The module generator was developed for the layout of the verified DSP system, and generates the functional block to be used in the DSP chip. And then the placement tool determines the appropriate positions of the cells in the DSP chip. In this paper, the placement tool was implemented by Min-Cut and Simulated Annealing algorithm. The placement process can be controlled by the several conditions input by the system designer.

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AE32000B: a Fully Synthesizable 32-Bit Embedded Microprocessor Core

  • Kim, Hyun-Gyu;Jung, Dae-Young;Jung, Hyun-Sup;Choi, Young-Min;Han, Jung-Su;Min, Byung-Gueon;Oh, Hyeong-Cheol
    • ETRI Journal
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    • 제25권5호
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    • pp.337-344
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    • 2003
  • In this paper, we introduce a fully synthesizable 32-bit embedded microprocessor core called the AE32000B. The AE32000B core is based on the extendable instruction set computer architecture, so it has high code density and a low memory access rate. In order to improve the performance of the core, we developed and adopted various design options, including the load extension register instruction (LERI) folding unit, a high performance multiply and accumulate (MAC) unit, various DSP units, and an efficient coprocessor interface. The instructions per cycle count of the Dhrystone 2.1 benchmark for the designed core is about 0.86. We verified the synthesizability and the area and time performances of our design using two CMOS standard cell libraries: a 0.35-${\mu}m$ library and a 0.18-${\mu}m$ library. With the 0.35-${\mu}m$ library, the core can be synthesized with about 47,000 gates and operate at 70 MHz or higher, while it can be synthesized with about 53,000 gates and operate at 120 MHz or higher with the 0.18-${\mu}m$ library.

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Discovery of a Novel 2,6-Difunctionalized 2H-Benzopyran Inhibitors Toward Sphingosylphosphorylcholine Synthetic Pathway as New Anti-inflammatory Target

  • Lee, Gee-Hyung;Lee, Seong Jin;Jeong, Dae Young;Kim, Ha-Young;Lee, Doohyun;Lee, Taeho;Hwang, Jong-Yeon;Park, Woo Kyu;Kong, Jae-Yang;Cho, Heeyeong;Gong, Young-Dae
    • Bulletin of the Korean Chemical Society
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    • 제35권8호
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    • pp.2385-2390
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    • 2014
  • Novel 2,6-difuctionalized 2H-benzopyrans were synthesized and evaluated for a sphingosylphosphorylcholine(SPC) inhibitor. The synthetic 2H-benzopyrans 1c and 3a showed high potency in SPC-induced cell proliferation assay ($IC_{50}$ < 20 nM). Neither hERG $K^+$ channel binding (> $10{\mu}M$) nor CYP inhibitions (> $10{\mu}M$) were observed. Also, the simple structure-activity relationship (SAR) results were obtained from analysis of 2H-benzopyran derivatives 1-3 and the anti-SPC effect of 2H-benzopyran 1c was confirmed by a HUVEC tube formation assay.

EST profiling을 통한 당근(Daucus carota var. sativa)의 종모 형성에 관련된 유전자 분석 (Analysis of Seed Hair Formation Related Genes by EST Profiling in Carrot (Daucus carota var. sativa))

  • 황은미;오규동;심은조;전상진;박영두
    • 원예과학기술지
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    • 제28권6호
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    • pp.1039-1050
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    • 2010
  • 당근은 서양뿐만 아니라 중국 및 한국과 같은 아시아 전역에서 요리로 많이 이용되는 유용한 작물 중 하나이다. 그러나 당근 종자 표면에는 모(毛)가 존재하고 이 종모는 발아율을 증가시키기 위해 제거해야 한다. 더욱이 종모 처리는 시간과 인력 및 자본의 소비와 같은 추가적인 손실을 동반하였다. 이러한 문제점을 방지하기 위해 단모종자를 이용하여 모형성과 관련된 유전자의 연구가 필요하다. 당근 종모의 발달은 2차 세포벽의 합성단계 동안 cellulose의 합성 과정과 연관되어 있음을 바탕으로, EST profiling을 통해 종모와 관련된 유전자를 탐색하고자 하였다. 당근 종모 형성에 관련된 유전자 발현을 조사하기 위해, 성숙 초기 단계의 단모종자 659-1개체와 유모종자 677-14개체를 이용하여 cDNA library를 구축하였다. 단모종자 659-1개체와 유모종자 677-14개체에서 확보된 EST 염기서열의 NCBI database BLASTX 분석을 통한 EST profiling 결과, 172개와 224개의 unigene은 이미 알려진 단백질 염기서열과 상동성을 보였으며 나머지 233개와 192개의 unigene은 확인되지 않는 유전자들이었다. EST는 추정되는 기능에 따라 16개의 category로 그룹화되었다. 전체 EST 중 29개의 unigene이 2차 세포벽 합성 단계 동안 cellulose의 합성 pathway상의 종모 형성을 조절하는 유전자로 추정되며, 실제로 종모 발달과 관련된 14개의 unigene이 유모종자 계통에서만 발견되었다.