• Journal of Ginseng Research
• /
• v.38 no.2
• /
• pp.130-135
• /
• 2014

Background: Panax ginseng, the most famous medicinal herb, has a highly duplicated genome structure. However, the genome duplication of P. ginseng has not been characterized at the sequence level. Multiple band patterns have been consistently observed during the development of DNA markers using unique sequences in P. ginseng. Methods: We compared the sequences of multiple bands derived from unique expressed sequence tagsimple sequence repeat (EST-SSR) markers to investigate the sequence level genome duplication. Results: Reamplification and sequencing of the individual bands revealed that, for each marker, two bands around the expected size were genuine amplicons derived from two paralogous loci. In each case, one of the two bands was polymorphic, showing different allelic forms among nine ginseng cultivars, whereas the other band was usually monomorphic. Sequences derived from the two loci showed a high similarity, including the same primer-binding site, but each locus could be distinguished based on SSR number variations and additional single nucleotide polymorphisms (SNPs) or InDels. A locus-specific marker designed from the SNP site between the paralogous loci produced a single band that also showed clear polymorphism among ginseng cultivars. Conclusion: Our data imply that the recent genome duplication has resulted in two highly similar paralogous regions in the ginseng genome. The two paralogous sequences could be differentiated by large SSR number variations and one or two additional SNPs or InDels in every 100 bp of genic region, which can serve as a reliable identifier for each locus.

• Korean Journal of Environment and Ecology
• /
• v.22 no.2
• /
• pp.152-158
• /
• 2008

This survey was conducted to analyze the effect of road construction near the group breeding places of the egrets and herons located at Palhyun-ri, Daegu, on their breeding during four years from 2003 to 2006. With the number of the individuals of the whole egrets and herons have been decreased due to the three-year road construction work(2003-2005). When the road construction was temporally stopped in 2006, the number of individuals of egrets and herons except Cattle egret Bubulcus ibis increased and partocilarly, the Gray heron Ardea cinerea was found to have been influenced the most by this construction in comparison with other egrets and herons. The number od individuals of large egrets, little egrets and herons was found to decrease during the construction period. After cutting off the nest trees and removing some parts of the breeding site, the herons and egrets tended to move their nesting place from roadsides to the inside of the breeding area. Trees for the nests decreased due to the increase in fellen trees caused by bird nests per tree increased gradually. As for the formation ratio of trees for the nests, the ratio of pine trees lowered yearly while that of acacia and oak trees was increasing during the survey.

• Journal of Forest and Environmental Science
• /
• v.31 no.3
• /
• pp.235-240
• /
• 2015

Zelkova serrata is an important hardwood species for the timber industry in Japan. Tree breeding programs for this species have mainly focused on growth characteristics such as stem diameter (D), tree height (TH), stem form, and branching. In order to fulfill timber industry needs, wood quality improvement should be included in the tree breeding program of this species. In the present study, growth characteristics, such as D and TH, and the stress-wave velocity (SWV), which is highly correlated with Young's modulus of wood, were measured for 20-year-old Z. serrata from eight half-sib families planted in a progeny test site with three different initial spacings. Significant differences in all the measured characteristics were found among the eight half-sib families. The variance components of the half-sib families for D, TH, and SWV were 27.2%, 47.3%, and 33.5%, respectively. These results indicate that all the measured characteristics of this species could be improved by tree breeding programs. In addition, only low correlation coefficients were obtained between the growth characteristics and SWV, indicating that extensive selection on SWV in tree breeding programs may not always lead to a reduction in yield volume.

• Journal of Forest and Environmental Science
• /
• v.28 no.4
• /
• pp.289-294
• /
• 2012

This study was conducted from April 2012 to June 2012 to analyze breeding status of Black woodpeckers (Dryocopus martius) in the Gayasan National Park. Nest height, tree diameter which a nest built and altitude at the nest site of Black woodpeckers were 17.4 m, 63.8 cm and 587 m, respectively. A pair of Black woodpeckers completed a clutch in 4 eggs on 7 May and 3 of eggs hatched on 24 May 2012. Both female and male incubated eggs and never left eggs without one of parents. A male more contributed to build a nest than a female. Incubation duration was higher in a male than in a female. Nestlings made a begging call in a nest during the growing period. Begging frequency of nestlings increased from 11 days up to 20 days after hatching. After then, nestlings reduced begging and fledged a nest 24 days after hatching. This study provided information of breeding ecology to protect and manage population of Black woodpeckers which are endangered species in South Korea.

• Journal of Wetlands Research
• /
• v.13 no.1
• /
• pp.67-77
• /
• 2011

To classify the relationship between riparian vegetation type and bird habitat, we studied the vegetation and avian species in the three streams(Anyang Stream, Gap Stream, Seom River), located in middle province. Five different vegetation types - Woodland type, Shrub type, Tall and wet grassland type, Low and dry grassland type and Cropland - were identified. The habitats of avian species were highly correlated with vegetation type. Streptopelia orientalis and Hypsipetes amaurotis were found in woodland. Both Paradoxornis webbiana and Phoenicurus auroreus were mainly found in shrub. Tall and wet grassland were preference habitats of Ixobrychus sinensis, Acrocephalus arundinaceus, while, low and dry grassland were occupied by Phasianus colchicus, Falco tinnunculus. Cropland were used as breeding and feeding sites for Egretta alba modesta, Anas poecilorhyncha, Anthus spinoletta. Distribution patterns of avian species were clearly divided by vegetation type and site characteristics in the stream.

• Journal of the Korean Society of Environmental Restoration Technology
• /
• v.17 no.1
• /
• pp.147-162
• /
• 2014

This study aims to provide the biological and geographical materials to identify the changes in population of Family Ardeidae included Egretta alba modesta, Egretta garzetta, Bubulcus ibis, and Nycticorax nycticorax and establish their conservation measurement in terms of the fragmented and deteriorated habitat by human development such as housing and park projects. Wonjucheon Stream was measured the highest species diversity since the survey site was relatively less interfered by the surrounding human beings showing lower disturbance elements. However, the closer the stream comes downstream, the more the artificial disturbance elements generate, confirming that the species better adapted to contamination grow in more density so that the species composition becomes simplified. It implies that feeding place as well as breeding-growing places is also more closely related to the changes in population structure and species composition of Family Ardeidae. The results of Family Ardeidae immigration in Taejang-dong, Wonju, among the other survey sites, revealed that a total of 231 came to the site in 2006; and 210 in 2011, showing more or less reduction in the population. In the mean while, Namyang-dong in Hwaseong City showed the continuous decrease in population number of Family Ardeidae with 135 before development and 60 during development, resulting in the number never growing but continuously narrowing over and over after development. As a result of surveying the number of Family Ardeidae that bred following the findings above, Taejang-dong in Wonju City had 4 species of Family Ardeidae being bred, however, showing the decrease in number of population from 998 in 2006 to 589 in 2011. Namyang-dong in Hwaseong was confirmed to have as many as 352 of the population in 2006 and 230 in 2008; after the deforestation on their habitat, they had not lived in the site any longer, suggesting that the development would significantly affect Family Ardeidae.

• Asian-Australasian Journal of Animal Sciences
• /
• v.19 no.3
• /
• pp.324-328
• /
• 2006

Carbonic anhydrase III (CA3) is a member of a multigene family that encode carbonic anhydrase isozymes. In this study, a complete coding sequence of the pig CA3 gene which encodes a 260 amino-acid protein was determined. The amino acid comparison showed high sequence similarities with previously identified human (86.5%) CA3 gene and mouse (91.5%) Car3 gene. The partial genomic DNA sequences were also investigated. The length of intron 1 was 727 bp. Comparative sequencing of three pig breeds revealed that there was a T${\rightarrow}$C substitution at position 363 within intron 1. The substitution was situated within a NcoI recognition site and was developed as a PCR-restriction fragment length polymorphism (RFLP) marker for further use in population variation investigations and association analysis. Two alleles (A and B) were identified, and 617 bp fragments were observed for the AA genotype and 236 bp and 381 bp fragments for the BB genotype. The polymorphism of CA3 was detected in 8 pig breeds. Allele B was predominant in the Western pig breeds. In addition, association studies of the CA3 polymorphism with carcass traits in 140 $Yorkshire{\times}Meishan$ $F_2$ offspring showed that the NcoI PCR- RFLP genotype may be associated with variation in several carcass traits of interest for pig breeding. Allele B was associated with increases in lean meat percentage, loin eye height and loin eye area. Statistically significant association with backfat thickness was also found; pigs with the AB genotype had much less backfat thickness than AA or BB genotypes.

• Korean Journal of Environment and Ecology
• /
• v.29 no.5
• /
• pp.681-692
• /
• 2015

It is well documented that physiological and nutritional condition of wintering birds is strongly related to migration success to breeding sites, and also breeding success. However, how abiotic factors during winter affect the migration and breeding successes still remains unclear. Thus, this study developed a dynamic-state-dependent model for wintering life-history to identify the potential impact on the life-history, success to breeding site and breeding success of wintering birds, which are related to temperature fluctuation, interspecific competition and human disturbance at the wintering sites. To find the best-fit-model, we referred to the existing research data on wintering ecology of Red-crowned cranes (Grus japonensis) in Cheolwon, Korea, which is well documented as a long-term wintering study. Our model predicted that the higher temperature fluctuation and a higher rate of human disturbance are negatively related to migration success to breeding sites and their fitness, ultimately breeding success via changing of proportion in resource allocation (for e. g., lower energy compensation or higher level of stress accumulation). Particularly, the rate of body mass compensation after arrival at wintering sites may be accelerated when there are less temperature fluctuations and a lower rate of human disturbance. In addition, the rate of interspecific competition sharing the wintering foraging sites is negatively related to the rate of body mass compensation. Consequently, we discussed the conservation strategies of wintering birds based on the outcomes of the model.

• Korean Journal of Environmental Biology
• /
• v.31 no.4
• /
• pp.340-346
• /
• 2013

We have confirmed the first case of mass mortality which occurred in the wild populations of larval toad, Bufo bufo gargarizans during 2007~2009 at Mangwel pond, which is a long time breeding site, and is located at the south eastern area in Daegu. We have investigated through microbiological tests the cause of mass decease of the larval toad, and detected numerous bacteria from the intestine by histological examines and cultures. The pathogen isolated from the infected larval toads has been identified as Aeromonas hydrophila, which is widely distributed in aquatic environment. However, this phenomenon of mass lethal pattern of the larval toad disappeared at the breeding pond after maintaining better water levels and low temperature in spring during breeding season in 2010. We propose that the high temperatures during the 2007~2009 breeding season resulted in lower water levels and drier conditions leading to explosive propagation of A. hydrophila in the pond which impacted the larval toad's immune function.

• Journal of Applied Biological Chemistry
• /
• v.61 no.4
• /
• pp.305-314
• /
• 2018

'New Breeding Techniques (NBTs)' have been one of hot issues, since their future will be affected profoundly by national as well as international regulatory landscapes. In this review, we compare characteristics of NBTs with conventional and genetic modification, and analyze genetically modified organism (GMO) regulatory systems in the context of possible regulation of NBTs. NBTs are very heterogeneous in terms of principles, methodologies, and final products. As Living Modified Organisms (LMO) is defined in the Cartagena Protocol on Biosafety (CPB) as an organism containing novel combination of genetic materials obtained by the use of modern biotechnology, CPB as well as other national legislations locate itself somewhere in the middle between product-based and process-based regulations. It is also noted that jurisdictions with regulatory systems more oriented to product-based one tend to be more productive and decide or may decide to exempt site-directed nucleases-1 from GMO regulation. In this context, Korean legislations are reviewed to clarify the commons and differences in GMO definitions. Act on Transboundary Movement of LMO Act, Food Sanitation Act and Agricultural and Fishery Products Quality Control Act are three major acts to regulate GMOs. It is noted that there are differences in the definition of LMO or GM food/products especially between the LMO Act and the Food Sanitation Act. Such differences may cause conflicts between Acts when policy-decision regarding the regulation of NBTs is made. Therefore, it is necessary to reorganize legislations before policies regarding the regulation of any techniques from biotechnology are made.