• 한국균학회소식:학술대회논문집
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• 2015.05a
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• pp.15-15
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• 2015

Aspergillus fumigatus is a major cause of invasive aspergillosis (IA), a significant health issue worldwide with high mortality rates up to 95%. Our lab is interested in how A. fumigatus adapts to low oxygen conditions 'hypoxia', which is one of the important host microenvironments. A. fumigatus SrbA is a basic helix-loop-helix (bHLH) transcriptional regulator and belongs to sterol regulatory element binding protein (SREBP) family members. Loss of SrbA completely blocks growth in hypoxia and results in avirulence in murine models of IA suggesting an essential role of SrbA in hypoxia adaptation and virulence in A. fumigatus. We conducted chromatin immunoprecipitation sequencing (ChIP-seq) with A. fumigatus wild type using a SrbA specific antibody, and 97 genes were revealed as SrbA direct targets. One of the 'SrbA regulons' (AFUB_099590) was a putative bHLH transcriptional regulator whose sequence contained a characteristic tyrosine substitution in the basic portion of the bHLH domain of SREBPs. Therefore, we designated AFUB_099590 SrbB. Further characterization of SrbB demonstrated that SrbB is important for radial growth, biomass production, and biosynthesis of heme intermediates in hypoxia and virulence in A. fumigatus. A series of quantitative real time PCR showed that transcription of several SrbA regulons is coordinately regulated by two SREBPs, SrbA and SrbB in hypoxia. This suggests that SrbA and SrbB have both dependent and independent functions in regulation of genes responsible for hypoxia adaptation in A. fumigatus. Together, our data provide new insights into complicated roles of SREBPs in adaptation of host environments and virulence in pathogenic fungi.

• Journal of Marine Bioscience and Biotechnology
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• v.2 no.3
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• pp.174-186
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• 2007

Amphora coffeaeformis and Achnanthes longipes are commonly found as dominant benthic microalgae in Jeju coastal water throughout the year. In order to investigate pharmaceutical uses of these diatoms, each single species was isolated with micropipette under phase contrast microscope and subcultured with synthetic seawater media which was enriched with F/2 media, trace metal solution and $Na_2SiO_3$). Growth characteristics of these species were also determined with different combination of salinity, nutrients concentration and temperature. Thereafter, mass culture of each species was done based on the maximum growth condition. Biomass was collected after two weeks of mass culture and freeze dried for antioxidant study. The antioxidant properties of different fractions (n-hexane, chloroform and ethylacetate) obtained by solvent fractionation of 80% methanolic extract of two microalgae were investigated for free radical, reactive oxygen species scavenging (Super oxide, Hydrogen peroxide, Hydroxyl radical and Nitric oxide), metal chelating and lipid peroxidation inhibition activities. All fractions of A. longipes showed higher $DPPH^{\cdot}$ (free radical) scavenging activities (n-hexane: 89.0%, Chloroform: 76.0%, Ethylacetate: 66.0%, Methanol: 90.6% and aqueous residue: 63.0%). N-hexane fraction of A. longipes showed significantly higher activity (49.0%) on nitric-oxide. Ethylacetate fraction of A. longipes and aqueous residue of A. coffeaeformis exhibited 64.0% and 75.6% metal chelating activity which was higher than commercial antioxidants (${\alpha}$-tocopherol: 18.0% and BHT: 16.0%). The n-hexane fraction of A. coffeaeformis had 67.5% activity on $DPPH^{\cdot}$. Chloroform and n-hexane fractions of A. coffeaeformis exhibited 46.2% and 47.6% $H_2O_2$ scavenging effects which were closely similar to commercial antioxidants (${\alpha}$-tocopherol: 49.2% and BHT: 58.6%). Chloroform and ethylacetate fractions of A. longipes and fraction of n-hexane and chloroform of A. coffeaeformis showed better lipid peroxidation activities than ${\alpha}$-tocopherol. These data suggest that both organic and aqueous fractions have good antioxidative compounds with different antioxidant properties.

• Journal of Korean Society of Environmental Engineers
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• v.28 no.9
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• pp.926-934
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• 2006

In this study, nitrate uptake rate(NUR) and oxygen uptake rate(OUR) tests were conducted for the assessment of application of Terephtalic acid(TPA) by-product as an alternative external carbon source for sewage treatment plant(STP). With the ASM1 installed in GPS-X the substrate removal characteristic was investigated with simulation by obtained data from NUR and OUR test. As a result, the fraction of RBDCOD(readily biodegradable COD) was mort than 90% and specific denitrification rate was observed about 8.00 mg $NO_3^-$-N/g VSS/hr that was similar to conventional external carbon source. In the next step, sensitivity analysis for heterotrophic biomass in ASM1 was conducted. Optimized parameters of ${\mu}_{max,H}$, $K_s$, ${\eta}_g$, and $b_H$ were 6.60/day, 23.3 mg/L, 0.88, and 0.54/day, respectively. Then, relative mean squared error(RMSE) was reduced to about 40%. Optimized parameters value were well corresponded with the substrate removal characteristics of high maximum and final endogenous specific OUR and high specific NUR.

• Journal of Bio-Environment Control
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• v.15 no.3
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• pp.244-249
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• 2006

This study examined the growth characteristics of broad-leaved container seedlings of Stewartia pseudocamellia, Tilia manshurica and Chionanthus retusus in relation to the raw material properties of the container medium in a green house for 4 months in order to develop optimum container medium for broad-leaved container seedlings. Among the container media used, the high level of the height growth and root collar diameter growth of broad-leaved container seedlings of Stewartia pseudocamellia, Tilia manshurica, Chionanthus retusus was found in the container media with relatively more cocopeat or peatmoss, and the dry matter production of the aerial part and the subterranean part. Also, concerning physiological characteristics, the photosynthetic rate of broad-leaved container seedlings increased in proportion to the volume of cocopeat and peatmoss in the container media. The effect of container media on the growth of broad-leaved container seedlings needs continuous study on the irrigation and fertilization programs along with the study on physiological characteristics including growth characteristics, biomass production and photosynthesis.

• Korean Journal of Ecology and Environment
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• v.37 no.4 s.109
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• pp.385-393
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• 2004

The herbivorous rotifers community (Brachionus spp.) and population dynamics of the predator rotifer (Asplanchna spp.) in three tributaries (Kumho R., Nam R., and Hwang R.) of the Nakdong River were evaluated on biweekly intervals from Jan. 2001 and Dec. 2002. High abundance of the herbivorous rotifers (peak density: - ca.>1000 Ind. $L^{-1}$) was observed from two tributaries (Kumho R. and Nam R.) during the spring and fall seasons, respectively. The high peaks of herbivorous rotifers were not evident in one tributary (Hwang R.). Among the herbivorous rotifers, brachionid rotifers (Brachionus spp. consisting of 7 species) were the characteristic rotifer community in this study. Brachionus spp. tended to occur together with the other perennial species, Asplanchna. Asplanchna was also present while two species of B. angularis and B. calyciflorus were highest in density. Subsequently, two populations (B. angularis and B. calyciflorus) rapidly declined, becoming rare after high peaks of Asplanchna occurred, except in one tributary (Hwang R.). We found community shifts in rotifer groups in mid-spring and mid-fall at the study site. The Asplanchna population could be appeared to play an important role in regulating the rotifer community and total plankton biomass in spring and fall at high trophic levels.

• Korean Journal of Ecology and Environment
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• v.38 no.1 s.110
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• pp.18-29
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• 2005

This study was conducted to understand seasonal dynamics of phyto- and zooplankton communities in a shallow eutrophic reservoir (Shingu reservoir) from November 2002 to February 2004. Cyanophyceae dominated throughout the year, except for spring (March ${\sim}$ May) when Bacillariophyceae (Melosira varians) and Chlorophyceae (Dictyosphaerium puchellum) were dominant. The change of dominant species in Cyanophytes occurred in June and December 2003, and the increase of phytoplankton cell density in July and November was observed when the P loading through two inflows was high. In May, Oscillatoria spp. and Aphanizomenon sp. were dominant, but replaced by Microcystis spp. in the end of May. Dominant Microcystis spp. sustained until December and shifted to Oscillatoria spp. and Aphanizomenon sp. TN/TP ratio ranged from 13 to 46 (Avg. $27{\pm}6$) from June to December when cyanobacteria (Microcystis spp.) dominated. Rotifers such as Keratella cochlearis, Keratella valga, Polyarthra spp., Conochilus unicornis, Pompholyx complanata dominated in average 67.8% of the zooplankton community. Abundance of zooplankton was the highest in June 2003, when Pompholyx complanata (12,388 ind $L^{-1}$) was dominant. In May, the significant increase of Conochilus unicornis biomass ($1,048{\pm}28\;{\mu}g\;C\;L^{-1}$) was observed with distinct improvement of transparency ($Z_{eu}/\;Z_m=\;1.1$). These results suggest that the seasonal variation of phytoplankton communities in this reservoir are to be understood as results of multi-interactive factors such as temperature, light condition and nutrients, and small-sized rotifers as important predator.

• Journal of Aquaculture
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• v.13 no.1
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• pp.87-99
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• 2000

Field survey on the variational characteristics of water quality and chlorophyll a concentraion were carried out at the 25 stations for four seasons in Kogum-sudo(Straits) southern coast of Korean Peninsula from Feburuary to October in 1993. We made an analysis on biological factor as chlorophyll a concentraion as well as physicio-chemical factors such as water temperature salinity sigma-t transparency dissolved oxygen(DO) chemical oxygen demand(COD) nutrients (ammonia, nitrite, nitrate, phosphate, and silicate) N/P ratio and suspended solid(SS). The waters in the Kogum-sudo were not stratified due to the tidal mixing. And the high productivity in photic layer were supported by high nutrients concentration from bottom waters. The high concen-trations of suspended solid in straits had a bad influence upon marine biology of nature and cultivations. In Kogum-sudo had a sufficient nutrients for primary productivity during a year. Especially phosphate and inorganic nitrogen were high the other side silicate was very low. The source of nutrients supply depend on rather mineralization of organic matters and input of seawater from outside than input of freshwaters from lands. Phytoplankton biomass as measured by chlorphyll a concentratiion was very high all the year round and it was controlled by the combination o f several environmental factors especially of phosphate in summer and dissolved nitrogen in other seasons.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.33 no.5
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• pp.482-488
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• 2000

The stability of c-phycocyanin and spectral property of phycobilins obtained from Spirulina platensis cultured by helical tubular photobioreactor were determined. The c-phycocyanin with maximal absorption of 622 nm and allophycocyanin with maximal absorption of 652 nm fractions were isolated from phycobilins by Sephadex G-100 gel chromatoBraphy, The yield of partially purified c-phycocyanin was about $1.5{\%}$ to dried biomass. The stability of c-phycocyanin in the range of $pH 4{\~}9$ was high but c-phvcocvanin was unstable over pH 10. The c-phycocyanin was stable at temperatures below $40^{\circ}C$, and at light intensity below 15000 lux. And metal ions were not affect the stability of c-phycocyanin.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.12 no.4
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• pp.370-379
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• 2007

Short-term variations of phytoplankton community structure in the southeast coastal waters of Korea from July to September in 2006 were investigated with data set of phytoplankton, chemical and physical water properties, and meterological data. A total of 11 sampling sites of 4 different depths (surface, 5 m, 10 m, and bottom) were visited on July 11-14, July 24-26, August 7-10, August 21-24 and September 5-8. We identified 151 species in 63 genera of phytoplankton in which diatoms were the most diverse group composed of 92 species in 37 genera. Dinoflagellates were the second diverse group of 52 species in 22 genera. The other groups include 7 species in 4 genera including Raphidophytes, and Euglenophyta. After rainy season, excessive nutrients from adjacent streams to the stratified water column proliferates Chaetoceros group in July. But biomass of phytoplankton and nutrient concentrations were decreased during the period of a drought in August. However, Chaetoceros was the most dominant genera in all depths of the first, second, third and fifth cruises, except the 4th cruise on August 21-24 when dominant group were dinoflagellates including Gymnodinium spp. and Cochlodinium polykrikoides. The characteristic of phytoplankton community and environment condition during summer 2006 can be summarized as: 1) low concentration of nutrients caused by a long lasting drought in August 2) no summer outbreak of C. polykrikoides because the strength of offshore waters was weak than other years, and 3) Chaetoceros spp. was the dominant species despite short period appearance of dinoflagellates.

• Korean Journal of Remote Sensing
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• v.22 no.6
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• pp.495-505
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• 2006

In order to classify aerosol type, Aerosol Optical Thickness (AOT) and Fine mode Fraction (FF), which is the optical thickness ratio of small particles$(<1{\mu}m)$ to total particles, data from MODIS (MODerate Imaging Spectraradiometer) aerosol products were analyzed over North-East Asia during one year period of 2005. A study area was in the ocean region of $20^{\circ}N\sim50^{\circ}N$ and $110^{\circ}E\simt50^{\circ}E$. Three main atmospheric aerosols such as dust, sea-salt, and pollution can be classified by using the relationship between AOT and FF. Dust aerosol has frequently observed over the study area with relatively high aerosol loading (AOT>0.3) of large particles (FF<0.65) and its contribution to total AOT in spring was up to 24.0%. Pollution aerosol, which is originated from anthropogenic sources as well as a natural process like biomass burning, has observed in the regime of high FF (>0.65) with wide AOT variation. Average pollution AOT was $0.31{\pm}0.05$ and its contribution to total AOT was 79.8% in summer. Characteristic of sea-salt aerosol was identified with low AOT (<0.3), almost below 0.1, and slightly higher FF than dust and lower FF than pollution. Seasonal analysis results show that maximum AOT $(0.33{\pm}0.11)$ with FF $(0.66{\pm}0.21)$ in spring and minimum AOT $(0.19{\pm}0.05)$, FF $(0.60{\pm}0.14)$ in fall were observed in the study area. Spatial characteristic was that AOT increasing trend is observed as closing to the eastern part of China due to transport of aerosols from China by the prevailing westerlies.