• Journal of Microbiology and Biotechnology
• /
• 제21권12호
• /
• pp.1257-1263
• /
• 2011

This paper is dedicated to the study on the external and internal mass transfers of glucose for succinic acid fermentation under substrate and product inhibitions using a bioreactor with stirred bed of immobilized Actinobacillus succinogenes cells. By means of the substrate mass balance for a single particle of biocatalysts, considering the kinetic model adapted for both inhibitory effects, specific mathematical models were developed for describing the profiles of the substrate concentration in the outer and inner regions of biocatalysts and for estimating the substrate mass flows in the liquid boundary layer surrounding the particle and inside the particle. The values of the mass flows were significantly influenced by the internal diffusion velocity and rate of the biochemical reaction of substrate consumption. These cumulated influences led to the appearance of a biological inactive region near the particle center, its magnitude varying from 0 to 5.3% of the overall volume of particles.

• 한국토양비료학회지
• /
• 제43권3호
• /
• pp.356-362
• /
• 2010

본 연구는 안성시 관내에서 발생하는 폐기물계 바이오매스 중 가축분뇨, 하수, 음식물 슬러지와 도축장에서 발생하는 소 반추위 잔재물을 실험에 공시하고 각 폐자원별 메탄생산퍼텐셜을 측정하였다. 또한 기존 연구자들이 메탄생산퍼텐셜을 측정 자료로부터 최대메탄생산량을 추정하는데 이용한 Modified Gompertz model과 Exponential model을 이용하여 최대메탄생산량을 추정에 있어 모델별 적용성을 비교 검토하고자 하였다. 하수, 가축분뇨, 음식물 슬러지 및 반추위 잔재물에서 TS 함량은 각각 18.1, 23.7, 13.6, 14.8%이었으며, VS 함량은 14.3, 18.9, 11.9, 12.5%이었다. 유기성 폐자원별로 혐기배양 전후 pH는 7.93~8.32의 범위에서 7.09~7.25로 약간 낮아졌으며, 배양기간 중 VS 분해율은 37.8, 8.3, 12.5, 56.4%이었다. Modified Gompertz model을 이용하여 구한 단위메탄생산량은 하수, 가축분뇨, 음식물, 반추위 잔재물에서 각각 0.086, 0.147, 0.146, 0.121 L $CH_{4}\;g^{-1}\;VS_{added}$이었으며, Exponential model을 이용하여 구한 단위메탄생산량은 하수, 가축분뇨, 반추위 잔재물에서 0.109, 0.246, 0.174 L $CH_{4}\;g^{-1}\;VS_{added}$로 Modified Gompertz model을 이용하여 추정한 단위메탄생산량과 비교하여 26.7 ~67.3% 정도 높게 추산되었다.

• 한국패류학회지
• /
• 제14권2호
• /
• pp.103-111
• /
• 1998

참굴에 다환성방향족탄화수소(PAHs)의 축적성과 이 물질들이 미치는 독성을 평가하기 위해 해양환경에서 빈번히 검출되는 PAHs 중의 하나인 fluoranthene을 사용한 모델연구를 수행하였다. Fluoranthene을 0.01-1ppm의 농도로 2주간 참굴에 노출시켰을 때 참굴 조직내의 fluoranthene의 농도는 노출기간 및 노출농도에 비례하여 최고 40-70배까지 증가하였다. 소화맹낭과 폐각근의 지질 과산화물가는 노출기간 및 노출농도에 관련하여 현저히 증가하였으며 수용성단백질의 함량은 노출기간이 길어짐에 따라 서서히 감소하였다. 그러나 glycogen 함량, nucleoside/nucleotide, DNA 및 RNA 함량은 변화하지 않았다. 이 결과로 fluoranthene은 굴의 조직내로 원활하게 축적함을 확인하였다. 또한 과산화지질의 함량은 fluoranthene에의 오염에 대해 신속히 반응하는 지표의 하나로 추정되며 수용성단백질의 감소도 비록 시간적으로 다소 둔감하기는 하나 또 다른 지표가 될 수 있을 것으로 사료된다.

• 한국패류학회지
• /
• 제14권2호
• /
• pp.113-120
• /
• 1998

참굴에 다환성방향족탄화수소(PAHs)의 축적성과 이 물질들이 미치는 독성을 평가하기 위해 해양환경에서 빈번히 검출되는 PAHs 중의 하나인 anthracene을 사용한 모델연구를 수행하였다. Anthracene을 0.01-1ppm의 농도로 2주간 참굴에 노출시켰을 때 참굴 조직내의 anthracene의 농도는 노출기간 및 노출강도에 비례하여 최고 25-85배까지 증가하였다. 소화맹낭과 폐각근의 지질 과산화물가는 노출기간 및 노출농도에 관련하여 현저히 증가하였으나 수용성단백질, glycogen, nucleoside/nucleotide 및 핵산의 함량은 변화하지 않았다. 이 결과로 anthracene은 굴의 조직내로 원할하게 축적됨을 확인하였으며 과산화지질의 함량은 anthracene에의 오염에 대한 예민한 생화학적 지표가 될 수 있을 것으로 사료된다.

• 대한약학회:학술대회논문집
• /
• 대한약학회 2003년도 Proceedings of the Convention of the Pharmaceutical Society of Korea Vol.2-2
• /
• pp.176.2-176.2
• /
• 2003

Transcription factors (TF) can bind tightly to specific DNA lesions formed by some anticancer agents. The formation these TF:(drug-modified DNA) complex may disrupt expression of genes critical for cell survival, and it was proved to be one of biochemical mechanisms of anticancer activity. Based on this model, we have designed programmable DNA Alkylating agents that can also attract TF, especially nuclear receptors. As a model compound, we designed drug molecules, RA-mustard and Am580-mustard, that enable to bind both retinoic acid receptor (RAR) and DNA by using molecular modeling techniques, and synthesized them by connecting chlorambucil and ligand for RAR with a linker unit. (omitted)

• 한국물환경학회지
• /
• 제26권1호
• /
• pp.96-103
• /
• 2010

In this work, the presence of nitrification biochemical oxygen demand (NBOD) frequently occurred in the sewer outflow in winter season was analysed by the COD fraction methods using the respirometry and process simulations with real operation data measurements and analysis. The activated sludge models applied in this process simulation were based on the ASM No.2d temp. models, published by International Association on Water Quality (IAWQ). The ASM No.2d model is an extension of the ASM No.2 model and takes into account of carbon removal, nitrification, denitrification and phosphorus removal. The denitrifying capacity of phosphorus accumulating organisms has been implemented in the ASM No.2d model because experimental evidence shows that some of the phosphorus accumulating organisms can denitrify. It was shown that the concentrations of autotrophs (X_AUT) in the secondary clarifier and the $NH_4-N$ of T-N increased in the presence of NBOD measurements. Because of the low temperature (average $8^{\circ}C$) and possible operational troubles, the outcoming autotrophs exhausted oxygen in the process of nitrifying $NH_4-N$.

• 한국생물공학회:학술대회논문집
• /
• 한국생물공학회 2003년도 생물공학의 동향(XIII)
• /
• pp.359-362
• /
• 2003

본 연구는 in vivo 와 유사한 환경을 조성하여 기존의 기관 배양기간인 7일보다 연장하려는 연구이며 세포가 있는 경우 세포가 없는 경우보다 morphology나 길이 성장 면에서도 모두 우수한 결과를 나타냈으며 minoxidil 첨가실험을 통해 DE를 이용한 모델이 단순 액침배양보다 한 단계 진보된 hair growth model 임을 확인할 수 있었다.

• The Plant Pathology Journal
• /
• 제38권2호
• /
• pp.90-101
• /
• 2022

Pathogenicity of eight Bacillus strains to seedlings of four cotton cultivars was evaluated under greenhouse conditions. Each of the tested cultivars was individually treated with powdered inoculum of each bacterial strain. Untreated seeds were planted as control treatments in autoclaved soil. Effects of the tested strains on levels and activities of some biochemical components of the infected seedlings were also assayed. The biochemical components included total soluble sugars, total soluble proteins, total free amino acids, peroxidase, polyphenol oxidase, phenols, and lipid peroxidation. ANOVA showed that Bacillus strain (B) was a very highly significant source of variation in damping-off and dry weight. Cotton cultivar (V) was a nonsignificant source of variation in damping-off while it was a significant source of variation in dry weight. B × V interaction was a significant source of variation in damping-off and a nonsignificant source of variation in dry weight. Bacillus strain was the most important source of variation as it accounted for 59.36 and 64.99% of the explained (model) variation in damping-off and dry weight, respectively. The lack of significant correlation between levels and activities of the assayed biochemical components and incidence of damping-off clearly demonstrated that these biochemical components were not involved in the pathogenicity of the tested strains. Therefore, it was hypothesized that the pathogenicity of the tested strains could be due to the effect of cell wall degrading enzymes of pathogenic toxins. Based on the results of the present study, Bacillus strains should be considered in studying the etiology of cotton seedling damping-off.

• Journal of Microbiology and Biotechnology
• /
• 제33권12호
• /
• pp.1657-1670
• /
• 2023

This study aimed to evaluate the effects of Limosilactobacillus fermentum and Lactiplantibacillus plantarum isolated from human feces coordinating with inulin on the composition of gut microbiota and metabolic profiles in db/db mice. These supplements were administered to db/db mice for 12 weeks. The results showed that the Lactobacillaceae coordinating with inulin group (LI) exhibited lower fasting blood glucose levels than the model control group (MC). Additionally, LI was found to enhance colon tissue and increase the levels of short-chain fatty acids. 16S rRNA sequencing revealed that the abundance of Corynebacterium and Proteus, which were significantly increased in the MC group compared with NC group, were significantly decreased by the treatment of LI that also restored the key genera of the Lachnospiraceae_NK4A136_group, Lachnoclostridium, Ruminococcus_gnavus_group, Desulfovibrio, and Lachnospiraceae_UCG-006. Untargeted metabolomics analysis showed that lotaustralin, 5-hydroxyindoleacetic acid, and 13(S)-HpODE were increased while L-phenylalanine and L-tryptophan were decreased in the MC group compared with the NC group. However, the intervention of LI reversed the levels of these metabolites in the intestine. Correlation analysis revealed that Lachnoclostridium and Ruminococcus_gnavus_group were negatively correlated with 5-hydroxyindoleacetic acid and 13(S)-HpODE, but positively correlated with L-tryptophan. 13(S)-HpODE was involved in the "linoleic acid metabolism". L-tryptophan and 5-hydroxyindoleacetic acid were involved in "tryptophan metabolism" and "serotonergic synapse". These findings suggest that LI may alleviate type 2 diabetes symptoms by modulating the abundance of Ruminococcus_gnavus_group and Lachnoclostridium to regulate the pathways of "linoleic acid metabolism", "serotonergic synapse", and" tryptophan metabolism". Our results provide new insights into prevention and treatment of type 2 diabetes.

• Journal of Microbiology and Biotechnology
• /
• 제17권3호
• /
• pp.496-510
• /
• 2007

This paper describes the use of a discrete mathematical model to represent the basic mechanisms of regulation of the bacteria E. coli in batch fermentation. The specific phenomena studied were the changes in metabolism and genetic regulation when the bacteria use three different carbon substrates (glucose, glycerol, and acetate). The model correctly predicts the behavior of E. coli vis-a-vis substrate mixtures. In a mixture of glucose, glycerol, and acetate, it prefers glucose, then glycerol, and finally acetate. The model included 67 nodes; 28 were genes, 20 enzymes, and 19 regulators/biochemical compounds. The model represents both the genetic regulation and metabolic networks in an integrated form, which is how they function biologically. This is one of the first attempts to include both of these networks in one model. Previously, discrete mathematical models were used only to describe genetic regulation networks. The study of the network dynamics generated 8 $(2^3)$ fixed points, one for each nutrient configuration (substrate mixture) in the medium. The fixed points of the discrete model reflect the phenotypes described. Gene expression and the patterns of the metabolic fluxes generated are described accurately. The activation of the gene regulation network depends basically on the presence of glucose and glycerol. The model predicts the behavior when mixed carbon sources are utilized as well as when there is no carbon source present. Fictitious jokers (Joker1, Joker2, and Repressor SdhC) had to be created to control 12 genes whose regulation mechanism is unknown, since glycerol and glucose do not act directly on the genes. The approach presented in this paper is particularly useful to investigate potential unknown gene regulation mechanisms; such a novel approach can also be used to describe other gene regulation situations such as the comparison between non-recombinant and recombinant yeast strain, producing recombinant proteins, presently under investigation in our group.