• Title/Summary/Keyword: barcode

검색결과 376건 처리시간 0.657초

Development of the Korea Marine Biodiversity Information System -Focus on the Establishment of the Korea Maine Species Inventory- (해양 생물다양성 정보시스템 개발 -한국 해양생물 종 목록 수립을 중심으로-)

  • Park, Soo-Young;Kim, Sung-Dae;Lee, Youn-Ho;Pae, Se-Jin;Park, Heung-Sik;Kim, Choong-Gon
    • Ocean and Polar Research
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    • 제29권3호
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    • pp.273-282
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    • 2007
  • For an efficient management and utilization of marine biodiversity information, we made an attempt to develop the Korea Marine Biodiversity Information System (KoMBIS), building a species name inventory of Korea marine organisms. The inventory includes 17 organism groups: phytoplankton, zooplankton, algae and halophyte, sponges, cnidarians, rotifers, nematodes, bryozoans, brachiopods, molluscs, echiurans, annelids, arthropods, echinoderms, urochordates and fish. The species names were collected from 37 different references and reviewed for validity by taxonomists, which resulted in 9,798 valid names in addition to 1,845 synonyms. The Korea marine species inventory is the first one of this kind, for previous Korean species name inventories were mostly composed of terrestrial and freshwater organisms. KoMBIS, the information system developed, contains not only the species name but also information on morphological and ecological characteristics such as distribution, DNA barcode, and references. This system is convenient for the inputting of new data and servicing users through the internet, so that management and utilization of the biodiversity information is more efficient. Linking the DNA barcode data with species information provides an objective measure for identification of a species, which accommodates the recommendation of Consortium for the Barcode of Life, and makes the Korea marine biodiversity information compatible with international databases. Considering the frequent exchange of marine organisms internationally via ballast water and such issues as climate change, this information system will be useful in many areas of marine biodiversity.

DNA barcode analysis for conservation of an endangered species, Aporia crataegi (Lepidoptera, Pieridae) in Korea (멸종위기종, 상제나비(나비목, 흰나비과)의 보전을 위한 DNA 바코드 특성 분석)

  • Park, Hae Chul;Han, Taeman;Kang, Tae Wha;Yi, Dae-Am;Kim, Sung-Soo;Lee, Young Bo
    • Journal of Sericultural and Entomological Science
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    • 제51권2호
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    • pp.201-206
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    • 2013
  • Aporia crataegi, an Korean endangered species, was first analyzed for DNA barcode sequences based on 28-year-old dried specimens and compared barcode characters with 36 individuals of ten geographical populations of Eurasia. They were revealed to consist of five different haplotypes. Among them, haplotype I was mostly extensive and high frequency with 75%. The south Korean individuals were confirmed to be belonging to haplotype I and have no genetic isolation on COI gene. By these results, we consider that selection of the identical haplotype from other geographical populations may be a requirement prior to performing for conservation and restoration of the Korean population. We also propose to analyse the additional genetic markers in order to understand a more accurate genetic structures between haplotypes of this species.

DNA barcoding of Schisandraceae in Korea (한국산 오미자과의 DNA 바코드)

  • Youm, Jung Won;Han, Sang-Wook;Seo, Seon Won;Lim, Chae Un;Oh, Sang-Hun
    • Korean Journal of Plant Taxonomy
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    • 제46권3호
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    • pp.273-282
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    • 2016
  • The establishment of a DNA barcode database at the regional scale and assessments of the utility of DNA barcodes are crucial for conservation biology and for the sustainable utilization of biological resources. Schisandraceae is a small family consisting of ca. 45 species. It contains many economically important species, such as Schisandra chinensis, which is widely used as a source in tonic beverages and in oriental medicine. In Korea, three species, S. chinensis, S. repanda, and Kadsura japonica, are distributed. We evaluated the level of variation of the DNA sequences of rbcL, matK, and the ITS regions from 13 accessions representing the distributional range of the three species. The three DNA barcode regions were easily amplified and sequenced. The minimum values of the interspecific genetic distances among S. chinensis, S. repanda, and K. japonica either separately or in combination are 4- to 23-fold higher than the maximum value of the intraspecific distance, showing that there is a clear DNA barcoding gap in the regions for Korean Schisandraceae. Phylogenetic analyses of the three DNA barcode regions, separately and simultaneously, indicate that all of the DNA barcode regions are useful for identifying a species of Schisandraceae in Korea. The distinctiveness of the three species of Schisandraceae was also supported at the species level when Chinese and Japanese populations were added. The results of this study indicate that three concatenated regions constitute the best option for DNA barcoding in Schisandraceae in Korea.

Discrimination of Echinochloa colona (L.) Link from other Echinochloa Species using DNA Barcode (국내에 유입되는 열대피(Echinochloa colona) 동정: DNA 바코드 중심)

  • Lee, Jeongran;Kim, Chang-Seok;Lee, In-Yong
    • Weed & Turfgrass Science
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    • 제4권3호
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    • pp.225-229
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    • 2015
  • Echinochloa colona is one of the most problematic weeds in the paddy fields of the world. In recent years, this species is likely to be introduced in Korea due to global warming, the expansion of international trade including agricultural products, and increasing tourists. We tried to identify the species from Korean Echinochloa crus-galli and E. oryzicola in order to establish the control measures in case of the initial influx. For this study, Echinochloa colona collected from the National Plant Germplasm System, USA were examined and E. crus-galli and E. oryzicola were collected in Korea. It is, however, very difficult to identify for Echinochloa species using morphological characters because of numerous interspecific and intraspecific types found in nature. Thus, we barcoded the species using rbcL, matK, and ITS. All three markers identified E. colona very well from the others. ITS alone may be enough as a DNA barcode for E. colona identification, when considering cost and effectiveness. The barcode sequences were deposited to the National Center for Biotechnology Information database for public use.

Adaptive thresholding for two-dimensional barcode images using two thresholds and the integral image (이중 문턱 값과 적분영상을 이용한 2차원 바코드 영상의 적응적 이진화)

  • Lee, Yeon-Kyung;Yoo, Hoon
    • Journal of the Korea Institute of Information and Communication Engineering
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    • 제16권11호
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    • pp.2453-2458
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    • 2012
  • In this paper, we propose an adaptive thresholding method to binarize two-dimensional barcode images. Adaptive thresholding methods that minimize light effects convert an original image into a binary image. The methods are applied to document image binarization. The methods, however, have problems of determining box size used in adaptive thresholding. thus, they inappropriate to use in recognition of two-dimensional barcode images. To overcome the problem, we analysis the problem and propose a new adaptive threshold method using the integral image. To show the effectiveness of our method, we compared our method with the well-known existing methods in terms of visual quality and processing time. The experimental result indicates that the proposed method is superior to the existing method.