• 한국미생물·생명공학회지
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• 제49권3호
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• pp.432-439
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• 2021

Microbial community plays important roles in the culture environment of mud crab Scylla serrata. One of the environmental management efforts for the cultivation of S.serrata is by stabilizing microorganisms involved in nitrogen cycle process. The availability of dissolved inorganic nitrogen in its culture environment under a recirculating system closely relates to the nitrogen cycle, which involves both anaerobic and aerobic bacterial activities. Anaerobically, there are two major nitrogen compound degradation processes, i.e., denitrification and dissimilatory nitrate reduction to ammonium (DNRA). This study aimed to identify denitrifying and DNRA bacteria isolated from the recirculating cultivation of S. serrata. The water samples were collected from anaerobic filters called close filter system, which is anaerobically conditioned with the addition of varying physical filter materials in the recirculating mud crab cultures. The results showed that three denitrifying bacterial isolates and seven DNRA bacterial isolates were successfully identified. The phylogenetic analysis based on 16S rRNA gene of the denitrifying bacteria revealed that HIB_7a had the closest similarity to Stenotrophomonas daejeonensis strain MJ03. Meanwhile, DNRA bacterial isolate of HIB_92 showed a 100% similarity to Bacillus sonorensis strain N3, Bacillus vallismortis strain VITS-17, Bacillus tequlensis strain TY5, Geobacillus sp. strain DB24, Bacillus subtilis strain A1, and Bacillus mojavensis strain SSRAI21. This study provides basic information denitrifying and DNRA bacterial isolates identity which might have the potential to be applied as probiotics in aquaculture systems in order to maintain optimal environmental conditions.

• Journal of Microbiology and Biotechnology
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• 제23권9호
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• pp.1187-1196
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• 2013

Global warming will have far-reaching effects on our ecosystem. However, its effects on Antarctic soils have been poorly explored. To assess the effects of warming on microbial abundance and community composition, we sampled Antarctic soils from the King George Island in the Antarctic Peninsula and incubated these soils at elevated temperatures of $5^{\circ}C$ and $8^{\circ}C$ for 14 days. The reduction in total organic carbon and increase in soil respiration were attributed to the increased proliferation of Bacteria, Fungi, and Archaea. Interestingly, bacterial ammonia monooxygenase (amoA) genes were predominant over archaeal amoA, unlike in many other environments reported previously. Phylogenetic analyses of bacterial and archaeal amoA communities via clone libraries revealed that the diversity of amoA genes in Antarctic ammonia-oxidizing prokaryotic communities were temperature-insensitive. Interestingly, our data also showed that the amoA of Antarctic ammonia-oxidizing bacteria (AOB) communities differed from previously described amoA sequences of cultured isolates and clone library sequences, suggesting the presence of novel Antarctic-specific AOB communities. Denitrification-related genes were significantly reduced under warming conditions, whereas the abundance of amoA and nifH increased. Barcoded pyrosequencing of the bacterial 16S rRNA gene revealed that Proteobacteria, Acidobacteria, and Actinobacteria were the major phyla in Antarctic soils and the effect of short-term warming on the bacterial community was not apparent.

• 한국물환경학회지
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• 제39권1호
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• pp.61-75
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• 2023

Denitrifying bacteria convert nitrate to nitrogen gas using an external carbon source as an electron donor. The external carbon source affects the denitrification performance and bacterial community structure. Although methanol is a cheap and effective external carbon source, the addition of diverse carbon sources may improve the total nitrogen removal rate and biomass characteristics, such as settleability. In this study, denitrifying reactions were performed using solely methanol and mixed carbon sources of methanol, glucose, and acetate in a sequencing batch reactor. The denitrifying reactor using methanol resulted in a total nitrogen removal rate of 0.39 ± 0.025 kg-N/m³-day while the suspended biomass transformed into dark brown granules. Methyloversatilis discipulorum had the highest predominance at 43.84%. The individual denitrifying biomasses, which were separately enriched with methanol, glucose, and acetate, showed the same total nitrogen removal performance of 0.39 ± 0.016 kg-N/m³-day. However, the addition of mixed carbon sources showed an improved total nitrogen removal rate of 0.42 ± 0.043 kg-N/m³-day, with the domination of Candidatus Saccaribacteria at 25.61%. The denitrifying granules turned pale yellow color. Influent COD/NO₃^--N ratios of 3.5, 5, and 7.5 exhibited COD/NO₃^--N consumptions of 4.3 ± 0.4, 4.4 ± 0.8, and 5.2 ± 0.7, and the consistent predominance of Candidatus Saccharibacteria.

• Membrane and Water Treatment
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• 제3권2호
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• pp.133-140
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• 2012

The overall performance of BNR-MBR, so-called Anoxic-Anaerobic-Aerobic Membrane Bioreactor ($A^3$-MBR), developed for nutrient removal was studied to determine the efficiencies and mechanisms under different solid retention time (SRT). The reactor was fed by synthetic high-rise building wastewater with a COD:N:P ratio of 100:10:2.5. The results showed that TKN, TN and phosphorus removal by the system was higher than 95%, 93% and 80%, respectively. Nitrogen removal in the system was related to the simultaneous nitrification-denitrification (SND) reaction which removed all nitrogen forms in aerobic condition. SND reaction in the system occurred because of the large floc size formation. Phosphorus removal in the system related to the high phosphorus content in bacterial cells and the little effects of nitrate nitrogen on phosphorus release in the anaerobic condition. Therefore, high quality of treated effluent could be achieved with the $A^3$-MBR system for various water reuse purposes.

• 한국환경농학회지
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• 제42권4호
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• pp.418-426
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• 2023

This study focused on nitrous oxide, a major greenhouse gas produced in agricultural settings through bacterial nitrogen oxidation in aerobic soil. Nitrogen fertilizer in farmland is identified as a primary source of nitrous oxide. The importance of reducing excess nitrogen in soil to mitigate nitrous oxide production is well-known. The study investigated the use of liquefied pig manure as an alternative to urea fertilizer in conventional agriculture. Results showed a more than two-fold reduction in nitrous oxide emissions in pepper cultivation areas with liquefied pig manure compared to that with urea fertilizer. The population of Nitrosospira, a nitrous oxide-producing bacterium, decreased by over 10% with liquefied pig manure. Additionally, nirK and nosZ, which are related to the denitrification process, significantly increased in the urea fertilizer group, whereas levels in the liquefied pig manure group resembled those with no nitrogen treatment. In conclusion, the experiment confirmed that liquefied pig manure can serve as an eco-friendly nitrogen fertilizer, significantly reducing nitrous oxide production, a major contributor to the atmospheric greenhouse effect.

• 한국물환경학회지
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• 제36권6호
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• pp.581-591
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• 2020

In this study, two types of reactors were operated to examine the properties of methanol uptake under the high-rate denitrification process. In a sequencing batch reactor, the denitrifying activity was enriched up to 0.80 g-N/g-VSS-day for 72 days. Then, the enriched denitrifying sludge was transferred to a completely stirred tank reactor (CSTR). At the final phase on Day 46-50, the nitrogen removal efficiency was around 100% and the total nitrogen removal rate reached 0.097±0.003 kg-N/㎥-day. During the continuous process, the sludge settling index (SVI30) was stabilized as 118.3 mL/g with the biomass concentration of 1,607 mg/L. The continuous denitrifying process was accelerated by using a sequencing batch reactor (SBR) with a total nitrogen removal rate of 0.403±0.029 kg-N/㎥-day with a high biomass concentration of 8,433 mg-VSS/L. Because the reactor was open to ambient air with the dissolved oxygen range of 0.2-0.5 mg-O2/L, an increased organic carbon requirement of 5.58±0.70 COD/NO3--N was shown for the SBR in comparison to the value of 4.13±0.94 for the test of the same biomass in a completely anaerobic batch reactor. The molecular analysis based on the 16S rRNA gene showed that Methyloversatilis discipulorum and Hyphomicrobium zavarzinii were the responsible denitrifiers with the sole organic carbon source of methanol.

• 한국지하수토양환경학회지:지하수토양환경
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• 제11권2호
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• pp.38-44
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• 2006

본 연구에서는 독립영양 황탈질반응을 이용한 질산성 질소 처리 반응 벽체의 탈질능과 미생물학적 안정성을 확인하기 위하여 황/석회석과 독립영양 황탈질 미생물을 이용한 칼럼 반응기를 상향식으로 500일간 운전하여 시간과 깊이에 따른 질산성 질소의 제거 효율을 분석하였으며, 반응기 내부의 미생물 군집 변화를 16S rDNA-cloning 염기서열 분석법 및 DGGE 기법으로 분석하였다. 실험 결과, 미생물의 대사 활동에 따라 칼럼 깊이 별로 질산성 질소 제거율 및 미생물 군집 분포의 큰 차이가 나타났다. 칼럼 반응기의 질산성 질소 제거율은 99%에 달하였으며, 특히 칼럼 아래쪽에서 질산성 질소 제거율이 매우 높게 나타났다. 시간에 따른 제거율은 칼럼 운전 100일 후부터 큰 차이를 나타내지 않았다. 초기 접종원에서는 독립영양 황탈질 미생물인 OTU DE-1, Thiobacillus denitrificans의 비율이 15%에 불과하였으며 반응기 운전 초기에는 접종원 및 100일 운전 후 반응기의 윗부분에서 종속영양 탈질 미생물인 OTU DE-2, Cenibacterium arsenioxidans와 DE-3, Geothrix fermentans가 78%와 90%로 높은 비율을 차지하여 종속영양탈질 미생물들이 우점종을 차지하였다. 그러나 OTU DE-1은 100일 후에 칼럼 아래쪽에서 94%의 비율을 차지하여 우점종이 되었으며, 500일 운전 후 분석한 결과 칼럼 전체에서 86%를 차지하여 독립영양 황탈질 미생물이 안정적으로 적응하였음을 알 수 있었다.

• Journal of Microbiology and Biotechnology
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• 제24권6호
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• pp.843-853
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• 2014

In the context of artificial groundwater recharge, a reactive soil column at pilot-scale (4.5 m depth and 3 m in diameter) fed by treated wastewater was designed to evaluate soil filtration ability. Here, as a part of this project, the impact of treated wastewater filtration on soil bacterial communities and the soil's biological ability for wastewater treatment as well as the relevance of the use of multi-bioindicators were studied as a function of depth and time. Biomass; bacterial 16S rRNA gene diversity fingerprints; potential nitrifying, denitrifying, and sulfate-reducing activities; and functional gene (amo, nir, nar, and dsr) detection were analyzed to highlight the real and potential microbial activity and diversity within the soil column. These bioindicators show that topsoil (0 to 20 cm depth) was the more active and the more impacted by treated wastewater filtration. Nitrification was the main activity in the pilot. No sulfate-reducing activity or dsr genes were detected during the first 6 months of wastewater application. Denitrification was also absent, but genes of denitrifying bacteria were detected, suggesting that the denitrifying process may occur rapidly if adequate chemical conditions are favored within the soil column. Results also underline that a dry period (20 days without any wastewater supply) significantly impacted soil bacterial diversity, leading to a decrease of enzyme activities and biomass. Finally, our work shows that treated wastewater filtration leads to a modification of the bacterial genetic and functional structures in topsoil.

• Journal of Microbiology and Biotechnology
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• 제15권1호
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• pp.14-21
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• 2005

By using PCR with nirS gene primers, three nirSharboring denitrifying bacteria (strain N6, strain N23, and strain R13) were newly isolated from activated sludge of a weak municipal wastewater treatment plant. Small-subunit rRNA gene-based analysis indicated that strain N6, strain N23, and strain R13 were closely related to Arthrobacter sp.,Staphylococcus sp., and Bacillus sp., respectively. In an attempt to identify their roles in biological nitrate and nitrite removal from sewage, we investigated their specific denitrification rates (SDNRs) for $NO_-^3$ - and $NO_-^2$ - in various cultures. All purecultures of each isolated nirS-harboring bacterial strain could remove $NO_-^3$ - and $NO_-^2$ - simultaneously in high efficiency, and the carbon requirements for $NO_-^3$ - removal of strain N6 and strain R13 were effectively low at 3.1 and 4.1 g COD/g $NO_3N$, respectively. In the case of mix-cultures of the strains (N6+N23, N6+R13, N23+R13, and N6+N23+R13), their SDNRs for $NO_-^3$ - were also effective, and their carbon requirements for $NO_-^3$ - removal were also effective at 3.0- 3.8 g COD/g NO3N. However, all tested mix-cultures accumulated $NO_-^2$ - in their culture media. On the other hand, the continuous culture of activated sludge mixed with strain N6 showed no significant increase of $NO_-^3$ - removal in comparison with strain N6's pure culture. These results suggest that nitrate and nitrite removal in biological wastewater treatment might be dependent on complicated bacterial interactions, including several effective denitrifying bacteria isolated in this study, rather than the specific bacterial types present and the number of bacterial types in activated sludge.

• Asian-Australasian Journal of Animal Sciences
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• 제26권11호
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• pp.1651-1658
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• 2013

Nitrate contamination in ground and surface water is an increasingly serious environmental problem and only a few bacterial strains have been identified that have the ability to remove nitrogen pollutants from wastewater under thermophilic conditions. We therefore isolated thermophilic facultative bacterial strains from wood chips that had been composted with swine manure under aerated high temperature conditions so as to identify strains with denitrifying ability. Nine different colonies were screened and 3 long rod-shaped bacterial strains designated as SG-01, SG-02, and SG-03 were selected. The strain SG-01 could be differentiated from SG-02 and SG-03 on the basis of the method that it used for sugar utilization. The 16S rRNA genes of this strain also had high sequence similarity with Geobacillus thermodenitrificans $465^T$ (99.6%). The optimal growth temperatures ($55^{\circ}C$), pH values (pH 7.0), and NaCl concentrations (1%) required for the growth of strain SG-01 were established. This strain reduced 1.18 mM nitrate and 1.45 mM nitrite in LB broth after 48 h of incubation. These results suggest that the G. thermodenitrificans SG-01 strain may be useful in the removal of nitrates and nitrites from wastewater generated as a result of livestock farming.