• Title/Summary/Keyword: application-specific function

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A Novel Approach to Investigating Protein/Protein Interactions and Their Functions by TAP-Tagged Yeast Strains and its Application to Examine Yeast Transcription Machinery

  • Jung, Jun-Ho;Ahn, Yeh-Jin;Kang, Lin-Woo
    • Journal of Microbiology and Biotechnology
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    • v.18 no.4
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    • pp.631-638
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    • 2008
  • Tandem affinity purification (TAP) method combined with LC-MS/MS is the most accurate and reliable way to study the interaction of proteins or proteomics in a genome-wide scale. For the first time, we used a TAP-tag as a mutagenic tool to disrupt protein interactions at the specific site. Although lots of commonly used mutational tools exist to study functions of a gene, such as deletional mutations and site-directed mutagenesis, each method has its own demerit. To test the usefulness of a TAP-tag as a mutagenic tool, we applied a TAP-tag to RNA polymerase II, which is the key enzyme of gene expression and is controlled by hundreds of transcription factors even to transcribe a gene. Our experiment is based on the hypothesis that there will be interrupted interactions between Pol II and transcription factors owing to the TAP-tag attached at the C-terminus of each subunit of Pol II, and the abnormality caused by interrupted protein interactions can be observed by measuring a cell-cycle of each yeast strain. From ten different TAP-tagged strains, Rpb7- and Rpb12-TAP-tagged strains show severe defects in growth rate and morphology. Without a heterodimer of Rpb4/Rpb7, only the ten subunits Pol II can conduct transcription normally, and there is no previously known function of Rpb7. The observed defect of the Rpb7-TAP-tagged strain shows that Rpb7 forms a complex with other proteins or compounds and the interruption of the interaction can interfere with the normal cell cycle and morphology of the cell and nucleus. This is a novel attempt to use a TAP-tag as a proteomic tool to study protein interactions.

Classification of Three Different Emotion by Physiological Parameters

  • Jang, Eun-Hye;Park, Byoung-Jun;Kim, Sang-Hyeob;Sohn, Jin-Hun
    • Journal of the Ergonomics Society of Korea
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    • v.31 no.2
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    • pp.271-279
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    • 2012
  • Objective: This study classified three different emotional states(boredom, pain, and surprise) using physiological signals. Background: Emotion recognition studies have tried to recognize human emotion by using physiological signals. It is important for emotion recognition to apply on human-computer interaction system for emotion detection. Method: 122 college students participated in this experiment. Three different emotional stimuli were presented to participants and physiological signals, i.e., EDA(Electrodermal Activity), SKT(Skin Temperature), PPG(Photoplethysmogram), and ECG (Electrocardiogram) were measured for 1 minute as baseline and for 1~1.5 minutes during emotional state. The obtained signals were analyzed for 30 seconds from the baseline and the emotional state and 27 features were extracted from these signals. Statistical analysis for emotion classification were done by DFA(discriminant function analysis) (SPSS 15.0) by using the difference values subtracting baseline values from the emotional state. Results: The result showed that physiological responses during emotional states were significantly differed as compared to during baseline. Also, an accuracy rate of emotion classification was 84.7%. Conclusion: Our study have identified that emotions were classified by various physiological signals. However, future study is needed to obtain additional signals from other modalities such as facial expression, face temperature, or voice to improve classification rate and to examine the stability and reliability of this result compare with accuracy of emotion classification using other algorithms. Application: This could help emotion recognition studies lead to better chance to recognize various human emotions by using physiological signals as well as is able to be applied on human-computer interaction system for emotion recognition. Also, it can be useful in developing an emotion theory, or profiling emotion-specific physiological responses as well as establishing the basis for emotion recognition system in human-computer interaction.

Evaluation of Human Factors for the Next-Generation Displays: A Review of Subjective and Objective Measurement Methods

  • Mun, Sungchul;Park, Min-Chul
    • Journal of the Ergonomics Society of Korea
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    • v.32 no.2
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    • pp.207-215
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    • 2013
  • Objective: This study aimed to investigate important human factors that should be considered when developing ultra-high definition TVs by reviewing measurement methods and main characteristics of ultra-high definition displays. Background: Although much attention has been paid to high-definition displays, there have been few studies for systematically evaluating human factors. Method: In order to determine human factors to be considered in developing human-friendly displays, we reviewed subjective and objective measurement methods to figure out the current limitations and establish a guideline for developing human-centered ultra-high definition TVs. In doing so, pros and cons of both subjective and objective measurement methods for assessing humans factors were discussed and specific aspects of ultra-high definition displays were also investigated in the literature. Results: Hazardous effects such as visually-induced motion sickness, visual fatigue, and mental fatigue in the brain caused by undesirable TV viewing are induced by not only temporal decay of visual function but also cognitive load in processing sophisticated external information. There has been a growing evidence that individual differences in visual and cognitive ability to process external information can make contrary responses after exposing to the same viewing situation. A wide vision, ultra-high definition TVs provide, can has positive and negative influences on viewers depending on their individual characteristics. Conclusion: Integrated measurement methods capable of considering individual differences in human visual system are required to clearly determine potential effects of super-high vision displays with a wide view on humans. All of brainwaves, autonomic responses, eye functions, and psychological responses should be simultaneously examined and correlated. Application: The results obtained in this review are expected to be a guideline for determining optimized viewing factors of ultra-high definition displays and accelerating successful penetration of the next-generation displays into our daily life.

Modulation of ATP-Induced Activation of the Muscarinic $K^+$ Channel Activity by Protein Kinase C

  • Kim, Yang-Mi;Park, Hong-Ki;Han, Jae-Hee;Park, Choon-Ok;Hong, Seong-Geun
    • The Korean Journal of Physiology and Pharmacology
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    • v.2 no.6
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    • pp.743-752
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    • 1998
  • The atrial acetylcholine-activated $K^+\;(K_{ACh})$ channel is gated by the pertussis toxin-sensitive inhibitory G $(G_K)$ protein. Earlier studies revealed that ATP alone can activate the $K_{ACh}$ channel via transphosphorylation mediated by nucleoside-diphosphate kinase (NDPK) in atrial cells of rabbit and guinea pig. This channel can be activated by various agonists and also modulated its function by phosphorylation. ATP-induced $K_{ACh}$ channel activation (AIKA) was maintained in the presence of the NDPK inhibitor, suggesting the existence of a mechanism other than NDPK-mediated process. Here we hypothesized the phosphorylation process as another mechanism underlying AIKA and was undertaken to examine what kinase is involved in atrial cells isolated from the rat heart. Single application of 1 mM ATP gradually increased the activity of $K_{ACh}$ channels and reached its maximum $40{\sim}50$ sec later following adding ATP. AIKA was not completely reduced but maintained by half even in the presence of NDPK inhibitor. Neither ADP nor a non-hydrolyzable ATP analogue, AMP-PNP can cause AIKA, while a non-specific phosphatase, alkaline phosphatase blocked completely AIKA. PKC antagonists such as sphingosine or tamoxifen, completely blocked AIKA, whereas PKC catalytic domain increased AIKA. Taken together, it is suggested that the PKC-mediated phosphorylation is partly involved in AIKA.

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Developing Standard Transmission System for Radiology Reporting Including Key Images (Key Image를 포함한 방사선과 판독결과지 표준전송시스템 개발)

  • Kim, Seon-Chil
    • Journal of radiological science and technology
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    • v.30 no.1
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    • pp.47-51
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    • 2007
  • Development of hospital information system and Picture Archiving Communication System is not new in the medical field, and the development of internet and information technology are also universal. In the course of such development, however, it is hard to share medical information without a refined standard format. Especially in the department of radiology, the role of PACS has become very important in interchanging information with other disparate hospital information systems. A specific system needs to be developed that radiological reports are archived into a database efficiently. This includes sharing of medical images. A model is suggested in this study in which an internal system is developed where radiologists store necessary images and transmit them in the standard international clinical format, Clinical Document Architecture, and share the information with hospitals. CDA document generator was made to generate a new file format and separate the existing storage system from the new system. This was to ensure the access to required data in XML documents. The model presented in this study added a process where crucial images in reading are inserted in the CDA radiological report generator. Therefore, this study suggests a storage and transmission model for CDA documents, which is different from the existing DICOM SR. Radiological reports could be better shared, when the application function for inserting images and the analysis of standard clinical terms are completed.

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Characterization of Bovine NANOG5'-flanking Region during Differentiation of Mouse Embryonic Stem Cells

  • Jang, Hye-Jeong;Park, Hwan Hee;Tran, Thi Thuy Linh;Lee, Hak-Kyo;Song, Ki-Duk;Lee, Woon Kyu
    • Asian-Australasian Journal of Animal Sciences
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    • v.28 no.12
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    • pp.1721-1728
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    • 2015
  • Embryonic stem cells (ESCs) have been used as a powerful tool for research including gene manipulated animal models and the study of developmental gene regulation. Among the critical regulatory factors that maintain the pluripotency and self-renewal of undifferentiated ESCs, NANOG plays a very important role. Nevertheless, because pluripotency maintaining factors and specific markers for livestock ESCs have not yet been probed, few studies of the NANOG gene from domestic animals including bovine have been reported. Therefore, we chose mouse ESCs in order to understand and compare NANOG expression between bovine, human, and mouse during ESCs differentiation. We cloned a 600 bp (-420/+181) bovine NANOG 5'-flanking region, and tagged it with humanized recombinant green fluorescent protein (hrGFP) as a tracing reporter. Very high GFP expression for bovine NANOG promoter was observed in the mouse ESC line. GFP expression was monitored upon ESC differentiation and was gradually reduced along with differentiation toward neurons and adipocyte cells. Activity of bovine NANOG (-420/+181) promoter was compared with already known mouse and human NANOG promoters in mouse ESC and they were likely to show a similar pattern of regulation. In conclusion, bovine NANOG 5-flanking region functions in mouse ES cells and has characteristics similar to those of mouse and human. These results suggest that bovine gene function studied in mouse ES cells should be evaluated and extrapolated for application to characterization of bovine ES cells.

Study on the Scientific Functional Investigation of Steel Space Truss Structures by using Technology Tree Methodology (기술트리를 이용한 입체트러스 강구조물의 과학적 기능분석 방법론에 관한 연구)

  • Lee, Dong Kyu;Kim, Do Hwan;Kim, Jin Ho
    • Journal of Korean Society of Steel Construction
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    • v.25 no.4
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    • pp.321-333
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    • 2013
  • This study presents a practice of a scientific methodology, i.e., technology tree to describe hierarchies of functions and technologies of research projects. In this study functional developments of a well-known steel space frame truss are dealt with for an application of the technology tree process to execute the maintenance of road tunnels without blocking vehicles. It is verified that established results of technology tree process can be linked to a proof process of revealed functions and component technologies such as reference works and structural analyses. In the future the technology tree methodology can be extendedly used for an effective tool setting up research plans and developing integrated technologies of a specific item such as a steel structure.

Combustion Performance of a Fullscale Liquid Rocket Thrust Chamber (실물형 액체로켓 연소기 지상 연소 성능 결과)

  • Seo Seong-Hyeon;Kim Jong-Gyu;Moon Il-Yoon;Han Yeoung-Min;Choi Hwan-Seok;Lee Soo-Yong;Cho Kwang-Rae
    • Proceedings of the Korean Society of Propulsion Engineers Conference
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    • 2005.11a
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    • pp.235-239
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    • 2005
  • A 30-tonf-class fullscale thrust chamber for the application to a LEO SLV has been combustion tested over the wide ranges of a mixture ratio and a chamber pressure. The thrust chamber designed for an open cycle engine with a turbopump was tested with a ablative combustion chamber instead of a regenerative chamber to first evaluate its performance and function. The test results revealed stable combustion characteristics. The hardware survived the harsh environment and showed very sound functional characteristics. The estimated combustion efficiency of the chamber turned out to be 95% and a specific impulse at sea level was estimated as 254sec, which are comparable to or above the predicted design values.

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Combustion Experiments of a High Pressure Liquid Propellant Thrust Chamber (액체로켓 엔진용 고압 연소기의 연소시험)

  • Seo, Seong-Hyeon;Han, Yeoung-Min;Moon, Il-Yoon;Lee, Kwang-Jin;Kim, Jong-Kyu;Lim, Byung-Jik;Ahn, Kyu-Bok;Choi, Hwan-Seok
    • Journal of the Korean Society of Propulsion Engineers
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    • v.10 no.4
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    • pp.40-46
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    • 2006
  • A 30-tonf-class fullscale thrust chamber for the application to a Low-Earth-Orbit Space Launch Vehicle has been combustion tested over the wide ranges of a mixture ratio and a chamber pressure. The thrust chamber designed for a pump-fed open cycle engine was tested with an ablative chamber instead of a regenerative one for the initial evaluation of its performance and function. The test results revealed stable combustion characteristics. The hardware survived the harsh environment and showed very sound functional characteristics. The measured combustion efficiency turned out to be 95% and a specific impulse at sea level was estimated as 254sec, which are comparable to or above the predetermined design values.

Analysis and Evaluation of DBMS Bulk Data Loading Through Multi-tiered Architecture for Heterogeneous Systems (이기종 시스템에서 다층 구조를 통한 DBMS 대용량 데이터 로딩의 분석 및 평가)

  • Tan, Hee-Yuan;Lim, Hyo-Taek
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.14 no.1
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    • pp.167-176
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    • 2010
  • Managing the growing number of data generated through various processes requires the aid of Database Management System (DBMS) to efficiently handle the huge amount of data. These data can be inserted into database m real time or in batch, that come from multiple sources, including those that are coming from inside and outside of a network. The insertion of large amount of data is commonly done through specific bulk loading or insertion function supplied by each individual DBMS. In this paper, we analyze and evaluate on handling data bulk loading for heterogeneous systems that is organised as multi-tiered architecture and compare the result of DBMS bulk loader against program insertion from a software development perspective. We propose a hybrid solution using staging database that can be easily deployed for enhancing bulk loading performance compared to insertion by application.