• The Plant Pathology Journal
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• 제21권3호
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• pp.229-236
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• 2005

Molecular profIles of PCR-RFLP and sequence analysis of internal transcribed spacer (ITS) regions of rDNA were compared between morphologically distinguishable species of Trichoderma isolated from substrates of oyster mushroom in Korea, T. atroviride, T. citrinoviride, T. harzianum, T. longibrachiatum, T. virens, and two unidentified species, Trichoderma sp. 1 and 2. PCR­RFLP analysis divided the Trichoderma spp. into six RFLP groups, A, B, C, D, E, and F. The RFLP groups were generally agreed with described morphological species, except that the RFLP group A containing the two unidentified species. A neighbor-joining tree based on ITS sequences well supported RFLP groups observed by RFLP analysis of ITS regions of rDNA. Additionally, the two unidentified species, Trichoderma sp. 1 and 2, which could not be distinguished by PCR­RFLP analysis, were separated in sequence analysis of ITS regions of rDNA.

• Journal of Korean Society for Atmospheric Environment
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• 제20권6호
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• pp.823-832
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• 2004

Atmospheric aerosol particles collected in Seoul on four single days, each in every seasons of 2001, were characterized and classified on the basis of their chemical species using low-Z particle electron probe X-ray microanalysis (low-Z particle EPMA). Low-Z particle EPMA technique can analyze both the size and the chemical species of individual aerosol particles of micrometer size and provide detailed information on the size distribution of each chemical species. The major chemical species observed in Seoul aerosol were aluminosilicate, silicon dioxide, calcium carbonate, organic, carbon-rich, marine originated, and ammonium sulfate particles, etc. The soil originated species, such as aluminosilicate, silicon dioxide, and calcium carbonate were the most popular in the coarse fraction, meanwhile, carbonaceous and ammonium sulfate were the dominant species found in the fine fraction. Marine originated species such as sodium nitrate was frequently encountered, up to 30% of the analyzed aerosol particles.

• Journal of Microbiology and Biotechnology
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• 제15권2호
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• pp.388-394
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• 2005

In order to investigate the distribution of dominant Bifidobacterium species in intestinal microflora of Korean adults and seniors, SDS-PAGE profiles of whole cell proteins were used for the identification of bifidobacteria. To confirm the reliability of SDS-PAGE, the Bifidobacterium species identified by SDS-PAGE of whole cell proteins were validated by using 16S rDNA sequencing analysis. The results of SDS­PAGE corresponded well with those determined by the analysis of 16S rDNA sequencing. Based on the analysis of SDS-PAGE patterns on unidentified fecal strains which showed positive in fructose-6-phosphate phosphoketolase activity, B. adolescentis, B. longum, and B. bifidum were identified in the feces of adults, and B. adolescentis, B. longum, B. bifidum, B. breve, and B. dentium were identified in those of seniors. In most of the fecal samples tested, the predominant Bifidobacterium species consisted of only a few species, and differences in the distribution and numbers of Bifidobacterium species were observed between adults and seniors. B. adolescentis and B. longum were found to be the most common species in feces of adults, but not in seniors. Accordingly, the distribution and abundance of bifidobacteria in the human intestinal microflora varied depending on the age of hosts.

• Korean Journal of Fisheries and Aquatic Sciences
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• 제55권5호
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• pp.742-750
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• 2022

This study aimed to monitor the distribution of Cobitidae in Korea by the identification of species using genetic analysis. Based on the genetic analysis, Cobitidae species in four of five domestic fish farms consisted of only Chinese muddy loach Misgurnus mizolepis, but muddy loach Misgurnus anguillicaudatus was also present it in one fish farm. In the case of imported Cobitidae species, in addition to Chinese muddy loach and muddy loach, the harmful species Paramisgurnus dabryanus, was also present. Chinese muddy loach accounted for 20%, 67%, and 60% of the S6, S7, and S8 samples, respectively. An analysis of the total length, body length, and weight showed that domestic Chinese muddy loach showed higher values than imported muddy loach, and imported Chinese muddy loach showed similar values to P. dabryanus. There were no significant differences in the country of origin of the three species. Thus, the mitochondrial cytochrome c oxidase subunit I gene sequence was analyzed and compared the verification of species identification. The three species of Cobitidae were genetically divided into three groups and determined to have genetic differences. These results indicate that it is necessary to reduce the heterogeneous mixing rate through discriminating species by genetic analysis.

• Korean Journal of Fisheries and Aquatic Sciences
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• 제44권5호
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• pp.499-505
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• 2011

The fishing grounds of Korean large-pair trawlers have shifted since exclusive economic zones (EEZs) were established in a fisheries agreement involving countries neighboring Korean waters. The distributions of marine ecosystems and fisheries resources have been changing with environmental changes such as global warming and with the shift in species targeted as a result of changes in fishing technology and fishing gear. This study analyzed variation in the species assemblages caught in Korean waters by large-pair trawlers as a result of these geopolitical and environmental changes. The data used in this study were obtained from the Fishery Production Statistics of Korea and the Port Sample Survey of the National Fisheries Research and Development Institute (NFRDI) from 1990 to 2007. Hierarchical clustering analysis (HCA) and correspondence analysis (CA) were used to explore the characteristics of the catch-species composition. The overall variation in the species composition of the catch of Korean large-pair trawlers showed that the proportions of croaker Johnius grypotus, small yellow croaker Larimichthys polyactis, eel Anguilla japonica, and blue crab Portunus trituberculatus decreased, whereas those of hairtail Trichiurus lepturus, Spanish mackerel Scomberomorus niphonius, anchovy Engraulis japonicus, and common squid Todarodes pacificus increased in Korean waters over the 18-year period. The results of the HCA of the annual catch data by species showed four different distributions of fish species according to year. Results of the CA showed that the species assemblages differed between the 1990s and 2000s.

• Korean Journal of Medicinal Crop Science
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• 제23권6호
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• pp.439-445
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• 2015

Background : Correct identification of Panax species is important to ensure food quality, safety, authenticity and health for consumers. This paper describes a high resolution melting (HRM) analysis based method using internal transcribed spacer (ITS) and 5.8S ribosomal DNA barcoding regions as target (Bar-HRM) to obtain barcoding information for the major Panax species and to identify the origin of ginseng plant. Methods and Results : A PCR-based approach, Bar-HRM was developed to discriminate among Panax species. In this study, the ITS1, ITS2, and 5.8S rDNA genes were targeted for testing, since these have been identified as suitable genes for use in the identification of Panax species. The HRM analysis generated cluster patterns that were specific and sensitive enough to detect small sequence differences among the tested Panax species. Conclusion : The results of this study show that the HRM curve analysis of the ITS regions and 5.8S rDNA sequences is a simple, quick, and reproducible method. It can simultaneously identify three Panax species and screen for variants. Thus, ITS1HRM and 5.8SHRM primer sets can be used to distinguish among Panax species.

• 한국연소학회:학술대회논문집
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• 한국연소학회 2014년도 제49회 KOSCO SYMPOSIUM 초록집
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• pp.5-7
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• 2014

A skeletal mechanism of coal combustion was derived from a detailed coal combustion kinetic mechanism through an importance analysis of chemical pathways. The reduction process consists of roughly two parts. The first process is performed based on a connectivity analysis between species. In this process, DRGEPSA is chosen for reduction process. Strongly connected species and related reactions from the important species set as start species by the operator are sorted into the reduced mechanism. About 70% of species and reactions can be removed with a limited accuracy loss. Subsequently the second reduction process, CSP, is performed. This method focuses on an importance of each reaction and can reduce a volume of mechanism appropriately. Through these analyses, a skeletal mechanism is generated that is including 65 species and 150 reactions. The generated skeletal mechanism is verified through a comparison with the detailed mechanism in the homogeneous reactor model of CHEMKIN-PRO under wide range of conditions. The generated mechanism can give an advantage in the analysis of coal combustion characteristics in detail in large scale simulations such as LES and DNS.

• Journal of Ecology and Environment
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• 제47권3호
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• pp.63-74
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• 2023

Background: Comparing with the several types of infrastructures, linear infrastructures are known to facilitate the spread of undesirable species in ecosystems. Recently, some new man-made habitats (e.g., gravel pads of the high-voltage towers, solid wastes and sewage habitats) were established along the Deltaic Mediterranean coast of Egypt as a result of the construction of the E-W coastal international highway. The current study evaluates the floristic composition associated with the pads of high-voltage towers that had been constructed for stabilizing the power line towers in the North Nile Delta. Plant cover was measured for 22 randomly stand. Results: Eighty-four species were recorded, of which 35 are perennials (41.6%), 2 biennials (2.3%) and 47 annuals (56.0%) belonging to 23 families. The largest families were Asteraceae (16 species), Poaceae (15 species), Chenopodiaceae (12 species), and Fabaceae (7 species). Ten aliens (10.7%) out of the 84 species were recorded. Therophytes have the highest percentage (58%), followed by hemicryptophytes (14%), chamaephytes (11%). Six vegetation groups were recognized in the study area after the application of two way indicator species analysis (TWINSPAN), Arthrocnemum macrostachyum, Phragmites australis, and Mesembryanthemum nodiflorum have the highest presence percentage. Both of Salsola cyclophylla and Solanum villosum were recorded for the first time in North Nile Delta. Natural habitat had the highest α-diversity, but the lowest β-diversity (4.9, 15.4), while gravel pads had the reverse (2.7, 30.8). Some species which are native to the desert habitats (e.g., Rumex pictus, Salsola kali, and Carthamus tenuis) were able to invade the North Nile Delta. Conclusions: Habitat of gravel pads is an expressing form about the intense of disturbance in Deltaic Mediterranean coast of Egypt. More of efforts should be carried out to avoid more human disturbances that creating as ruderal habitats which open the gate to invasive species in the flora of North Nile Delta.

• Journal of environmental and Sanitary engineering
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• 제21권2호
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• pp.20-29
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• 2006

Analysis of benthic macroinvertebrate community and biological estimation of water quality by the benthic macroinvertebrates were conducted at Olympic Park at its nearby waters in Seoul from December, 2004 to September, 2005. The benthic macrovertebrates were 49 species. Among them, 39 species of aquatic insects were included 11 species in odonata, 9 species in diptera, 7 species in hemiptera, 6 species in coleoptera, 3 species in ephemeroptera, 2 species in trichoptera and 1 species in lepipdoptera, and 10 species of non-insects were 6 species in mollusca, 2 species in hirudinea and 2 species in oligochaeta. Species number of lakes, Seongnae Stream within and outside the Olympic Park was 25 species, 35 species and 33 species, respectively. Individual number of lakes, Seongnae Stream within and outside the Olympic Park was $131\;inds/2.5m^2\;239\;inds/2.5m^2\;556\;inds/2.5m^2$, respectively. Mean dominance indices of lakes, Seongnae Stream within and outside the Olympic Park was 0.74, 0.61 and 0.72, respectively. According to the saprobic system based on the ESB index(Ecological score of benthic macroinvertebrate community), all survey sites are $\beta-mesosaprobic$ waters. To increase of abundance of benthic macroinvertebrates, regular interval monitoring has to be enforced and standard of water quality for the ecological ponds of Olympic Park has to be prepared.

• Development and Reproduction
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• 제18권1호
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• pp.43-49
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• 2014

Three species of Nortamea concinua (NC) and Haliotis discus hannai (HDH) from Tongyeong and Sulculus diversicolor supertexta (SDS) are widely distributed on the coast of the Yellow Sea, southern sea and Jeju Island in the Korean Peninsula under the innate ecosystem. There is a need to understand the genetic traits and composition of three mollusk species in order to evaluate exactly the patent genetic effect. PCR analysis was performed on DNA samples extracted from a total of 21 individuals using seven decamer oligonucleotides primers. Seven primers were shown to generate the unique shared loci to each species and shared loci by the three species which could be clearly scored. A hierarchical clustering tree was constructed using similarity matrices to generate a dendrogram, which was facilitated by the Systat version 10. 236 specific loci, with an average of 56.3 per primer, were identified in the NC species. 142 specific loci, with an average of 44.7 per primer, were identified in the HDH species. Especially, 126 numbers of shared loci by the three species, with an average of 18 per primer, were observed among the three species. Especially, the decamer primer BION-75 generated 7 unique loci to each species, which were identifying each species, in 700 bp NC species. Interestingly, the primer BION-50detected 42 shared loci by the three species, major and/or minor fragments of sizes 100 bp and 150 bp, respectively, which were identical in all samples. As regards average bandsharing value (BS) results, individuals from HDH species (0.772) exhibited higher bandsharing values than did individuals from NC species (0.655). In this study, the dendrogram obtained by the seven decamer primers indicates three genetic clusters: cluster 1 (CONCINNA 01~CONCINNA 07), cluster 2 (HANNAI 08~HANNAI 14), cluster 3 (SUPERTEXTA 15~SUPERTEXTA 21). Comparatively, individuals of HDH species were fairly closely related to that of SDS species, as shown in the hierarchical dendrogram of genetic distances.