• Title/Summary/Keyword: affinity analysis

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A Study on the Pump Performance Analysis by Modifying the Impeller for a Seawater Pump using CFD (임펠러 가공량에 따른 펌프성능의 해석적 연구)

  • Chang, Young Ki;Song, Woo Seok
    • Transactions of the Korean Society of Pressure Vessels and Piping
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    • v.8 no.3
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    • pp.23-27
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    • 2012
  • A seawater pumps in the nuclear power plant is responsible for providing cooling water to other components all the time. Because of the depreciation, the seawater pump with current impeller consumes too much power for maintaining the total head. Therefore the objective of this study is to reduce power with maintaining certain the total head by cutting the current impeller. By using a commercial CFD code, FLUENT, the overall performance of seawater pump with current and modified impeller was simulated. Also Affinity law was applied at pumps with various impeller diameter and evaluated the validity of the affinity law. The numerical results show that the pump efficiency is quite irrelevant to the diameters of the impellers and the pump efficiency becomes worse over the designed flow rate. And affinity law result and numerical one show good agreements at small change of impeller diameter. One of the impeller diameters was decided to modify and was applied to the nuclear power plant with the numerical study above.

Social Network Analysis using Common Neighborhood Subgraph Density (공통 이웃 그래프 밀도를 사용한 소셜 네트워크 분석)

  • Kang, Yoon-Seop;Choi, Seung-Jin
    • Journal of KIISE:Computing Practices and Letters
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    • v.16 no.4
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    • pp.432-436
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    • 2010
  • Finding communities from network data including social networks can be done by clustering the nodes of the network as densely interconnected groups, where keeping interconnection between groups sparse. To exploit a clustering algorithm for community detection task, we need a well-defined similarity measure between network nodes. In this paper, we propose a new similarity measure named "Common Neighborhood Sub-graph density" and combine the similarity with affinity propagation, which is a recently devised clustering algorithm.

Estimation of Biological Action of Dioxins by Some Geometric Descriptors (기하학적 변수에 의한 다이옥신의 독성 예측)

  • Hwang, Inchul
    • Environmental Analysis Health and Toxicology
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    • v.14 no.3
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    • pp.103-111
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    • 1999
  • To effectively predict the lipophilicity, the aryl hydrocarbon receptor (AhR) affinity, and TEF (Toxic equivalency factor) of dioxins by geometrical descriptors, the multiple linear regression methods with the forward selection and backward elimination were employed with statistical validity. The lipophilicity, the Ah receptor binding affinity, and the toxic equivalency factor of dioxins could be predicted using some geometrical descriptors.

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Application of Molecular Descriptor for Prediction and Analysis of the Affinity between Alkyl Substituted Super Hydrophobic Dyes and Polypropylene Fibers (폴리프로필렌 섬유용 알킬치환 초소수성 염료의 친화력 분석과 예측을 위한 Molecular Descriptor의 활용)

  • Jang, Gyeong-Jin;Jeong, Jong-Seok;Kim, Tae-Gyeong
    • Proceedings of the Korean Society of Dyers and Finishers Conference
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    • 2008.10a
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    • pp.77-78
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    • 2008
  • Affinity between alkyl substituted super hydrophobic dyes and polypropylene fiber has been analyzed by using the molecular descriptor as a method to predict chemical and physical characteristics of compounds. Hydrophobicity of synthesized dyes calculated by LogP which is one of molecular descriptors was increased continuously as the length of alkyl substituents increased.

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Purification and Characterization of Cholesterol Oxidase Produced by Streptomyces sp. No.4 (방선균 Streptomyces sp. No.4가 생산하는 Cholesterol Oxidase의 정제 및 특성)

  • 김현수;고희선
    • KSBB Journal
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    • v.14 no.3
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    • pp.322-327
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    • 1999
  • The cholesterol oxidase(EC.1.1.3.6) produced from Streptomyces sp. No.4 which isolated from soil was purified and investigated for the enzymatic properties. The enzyme was purified specifically by cholesterol affinity column chromatography with a yield of 28.3%. The purified enzyme showed a single polypeptide on SDS-PAGE and the molecular weight was estimated to be 60,000 daltons. The enzyme activity was strongly inhibited by metal ions such as $HgCl_2$ and $CuSO_4$. Dithiothreitol and mercaptoethanol inhibited the enzyme activity at concentration of 1mM. The Michaelis constant(Km) for cholesterol was found to be 1.38mM by Lineweaver-Burk plot analysis. Amino acid analysis showed that the enzyme protein was composed of 416 amino acid residues including 52moles of glycine and 19moles of tryptophane.

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Association between the plasma concentration of melatonin and behavioral temperament in horses

  • Yubin Song;Junyoung Kim;Youngjae Park;Minjung Yoon
    • Journal of Animal Science and Technology
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    • v.65 no.5
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    • pp.1094-1104
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    • 2023
  • Aggression in horses may cause serious accidents during riding and non-riding activities. Hence, predicting the temperament of horses is essential for selecting suitable horses and ensuring safety during the activity. In certain animals, such as hamsters, plasma melatonin concentrations have been correlated with aggressive behavior. However, whether this relationship applies to horses remains unclear. To address this research gap, this study aimed to evaluate differences in the plasma melatonin concentrations among horses of different breeds, ages, and sexes and examine the correlation between plasma melatonin concentrations and the temperament of the horses, including docility, affinity, dominance, and trainability. Blood samples from 32 horses were collected from the Horse Industry Complex Center of Jeonju Kijeon College. The docility, affinity, dominance, and trainability of the horses were assessed by three professional trainers who were well-acquainted with the horses. Plasma melatonin concentrations were measured using an enzyme-linked immunosorbent assay. The consequent values were compared between the horses of different breeds, ages, and sexes using a three-way analysis of variance and least significant difference post hoc test. Linear regression analysis was employed to identify the relationship between plasma melatonin concentrations and docility, affinity, dominance, and trainability. The results showed that the plasma melatonin concentrations significantly differed with breeds in Thoroughbred and cold-blooded horses. However, there were no differences in the plasma melatonin concentrations between the horse ages and sexes. Furthermore, plasma melatonin concentrations did not exhibit a significant correlation with the ranking of docility, affinity, dominance, and trainability.

Screening of Peptide Sequences with Affinity to Bisphenol A by Biopanning (바이오패닝에 의한 Bisphenol A 친화성 펩타이드 서열의 탐색)

  • Yoo, Ik-Keun;Choe, Woo-Seok
    • Korean Journal of Microbiology
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    • v.49 no.2
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    • pp.211-214
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    • 2013
  • Bisphenol A (BPA) is a highly hazardous component to human since it is regarded as one of endocrine disruptors. For the analysis and/or removal of BPA, the searching for the specific ligand with a selective affinity to target BPA is required. In order to find the peptide moiety that specifically binds to BPA, the ultrasound-assisted biopanning was carried out with a phage-displayed peptide library expressing constrained heptamer. After six rounds of positive screening against BPA particles followed by the negative screening against the surface of eppendorf tube, the peptide sequence (CysLysSerLeuGluAsnSerTyrCys) with affinity to BPA was screened based on the order of frequency from the screened phage clones. To further verify the specificity of screened peptide sequence, the cross-binding affinity of the phage peptide toward BPA analogues such as Bisphenol S (BPS) and Bisphenol F (BPF) was also assessed, where the selected phage peptide showed a higher affinity to BPA over BPS and BPF.

Identification of Histone Deacetylase 1 Protein Complexes in Liver Cancer Cells

  • Farooq, Muhammad;Hozzein, Wael N.;Elsayed, Elsayed A.;Taha, Nael A.;Wadaan, Mohammad A.M.
    • Asian Pacific Journal of Cancer Prevention
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    • v.14 no.2
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    • pp.915-921
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    • 2013
  • Background: Hepatocellular carcinoma is one of the leading causes of mortalities worldwide. The search for new therapeutic targets is of utmost importance for improved treatment. Altered expression of HDAC1 in hepatocellular carcinoma (HCC) and its requirement for liver formation in zebrafish, suggest that it may regulate key events in liver carcinogenesis and organogenesis. However, molecular mechanisms of HDAC1 action in liver carcinogenesis are largely unknown. The present study was conducted to identify HDAC1 interacting proteins in HepG2 cells using modified SH-double-affinity purification coupled with liquid mass spectrophotemetery. Materials and Methods: HepG2 cells were transfected with a construct containing HDAC1 with a C-terminal strepIII-HA tag as bait. Bait proteins were confirmed to be expressed in HepG2 cells by western blotting and purified by double affinity columns and protein complexes for analysis on a Thermo LTQ Orbitrap XL using a C18 nano flow ESI liquid chromatography system. Results: There were 27 proteins which showed novel interactions with HDAC1 identified only in this study, while 14 were among the established interactors. Various subunits of T complex proteins (TCP1) and prefoldin proteins (PFDN) were identified as interacting partners that showed high affinity with HDAC1 in HepG2 cells. Conclusions: The double affinity purification method adopted in this study was very successful in terms of specificity and reproducibility. The novel HDAC1 complex identified in this study could be better therapeutic target for treatment of hepatocellular carcinoma.

An effective immunoaffinity clean-up method for multi-DDT residue analysis

  • Hong, Ji-Youn;Hong, Jee-Eun;Lee, Eun-Ah;Park, Song-Ja;Lho, Dong-Seok;Kim, Jong-Hyun;Choi, Myung-Ja
    • Proceedings of the PSK Conference
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    • 2003.04a
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    • pp.290.3-291
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    • 2003
  • To increase detection sensitivity for multi-DDT residues (o,p-/p,p-DDT, o,p-/p,p-DDE, o,o-/o,p-DDD) analysis, a highly selective sample clean-up method was introduced prior to GC/MS analysis using immunoaffinity column. The immunoaffinity matrix was prepared by coupling IgG fraction of DDT antiserum to cyanogens bromide activated Sepharose 4B. Three DDT antisera (DDA-1, DDHP-2, DDCP-3) were test for affinity column ligand that obtained by imunizing respective DDT immunogen to rabbits, and IgG was purified using protein A affinity purification. (omitted)

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MHC Multimer: A Molecular Toolbox for Immunologists

  • Chang, Jun
    • Molecules and Cells
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    • v.44 no.5
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    • pp.328-334
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    • 2021
  • The advent of the major histocompatibility complex (MHC) multimer technology has led to a breakthrough in the quantification and analysis of antigen-specific T cells. In particular, this technology has dramatically advanced the measurement and analysis of CD8 T cells and is being applied more widely. In addition, the scope of application of MHC multimer technology is gradually expanding to other T cells such as CD4 T cells, natural killer T cells, and mucosal-associated invariant T cells. MHC multimer technology acts by complementing the T-cell receptor-MHC/peptide complex affinity, which is relatively low compared to antigen-antibody affinity, through a multivalent interaction. The application of MHC multimer technology has expanded to include various functions such as quantification and analysis of antigen-specific T cells, cell sorting, depletion, stimulation to replace antigen-presenting cells, and single-cell classification through DNA barcodes. This review aims to provide the latest knowledge of MHC multimer technology, which is constantly evolving, broaden understanding of this technology, and promote its widespread use.