• Title/Summary/Keyword: active sites

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Identification and Functional Characterization of Two Noncoding RNAs Transcribed from Putative Active Enhancers in Hepatocellular Carcinoma

  • Lee, Ye-Eun;Lee, Jiyeon;Lee, Yong Sun;Jang, Jiyoung Joan;Woo, Hyeonju;Choi, Hae In;Chai, Young Gyu;Kim, Tae-Kyung;Kim, TaeSoo;Kim, Lark Kyun;Choi, Sun Shim
    • Molecules and Cells
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    • v.44 no.9
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    • pp.658-669
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    • 2021
  • Enhancers have been conventionally perceived as cis-acting elements that provide binding sites for trans-acting factors. However, recent studies have shown that enhancers are transcribed and that these transcripts, called enhancer RNAs (eRNAs), have a regulatory function. Here, we identified putative eRNAs by profiling and determining the overlap between noncoding RNA expression loci and eRNA-associated histone marks such as H3K27ac and H3K4me1 in hepatocellular carcinoma (HCC) cell lines. Of the 132 HCC-derived noncoding RNAs, 74 overlapped with the eRNA loci defined by the FANTOM consortium, and 65 were located in the proximal regions of genes differentially expressed between normal and tumor tissues in TCGA dataset. Interestingly, knockdown of two selected putative eRNAs, THUMPD3-AS1 and LINC01572, led to downregulation of their target mRNAs and to a reduction in the proliferation and migration of HCC cells. Additionally, the expression of these two noncoding RNAs and target mRNAs was elevated in tumor samples in the TCGA dataset, and high expression was associated with poor survival of patients. Collectively, our study suggests that noncoding RNAs such as THUMPD3-AS1 and LINC01572 (i.e., putative eRNAs) can promote the transcription of genes involved in cell proliferation and differentiation and that the dysregulation of these noncoding RNAs can cause cancers such as HCC.

Transforming a Buffer Green into an Urban Park as Multi-functional Green Infrastructure - A Case of the Buffer Green of Sinmae Market in Daegu, Korea - (입체적 도시기반시설로서 완충녹지의 공원화 계획 - 대구광역시 신매시장 완충녹지 공원화 계획을 사례로 -)

  • Kim, Miyeun;Min, Byoungwook
    • Journal of the Korean Institute of Landscape Architecture
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    • v.49 no.2
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    • pp.101-112
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    • 2021
  • In Korea, efforts have been made continuously to improve the environment of traditional markets concerning the issues of urban regeneration. In particular, many old cities and traditional markets face a lack of parking spaces. As a solution to this, attempts are being made to prepare underground parking spaces by designing urban planning facilities in three-dimensional ways and utilizing the upper part as a more meaningful space. This study is about the master plan to use the upper green area while creating an underground parking lot at 571 Sinmae-dong, Suseong-gu, Daegu. This green area was defined as a space with dual values, 'defensive green space' that needs to be ecologically protected, and 'active cultural space' where walking flows to the market and various events are concentrated. Three specific design strategies to balance these values were presented. First, to prevent indiscriminate occupation and damage by people and maintain a healthy green environment, securing the maximum amount of undivided green space in the site was suggested. Second, a space layout and a topography and planting patterns that can overcome the morphological characteristics of narrow and long-shaped sites enable the experience of abundant green spaces. Third, providing space to strengthen the connections with nearby urban facilities such as Sinmae Market and Gosan Library can also intensively accommodate cultural activities in various cities. This study has academic significance in providing implications for urban regeneration projects with similar contexts in the future.

Strength Characteristics of Sedimentary Rock in Daegu-Gyungbuk Area Followed by Saturation and Crack Initiation (대구경북지역 퇴적암의 포화 및 균열 유발에 따른 강도 특성)

  • Park, Sung-Sik;Kim, Seong-Heon;Bae, Do-Han
    • Journal of the Korean Geotechnical Society
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    • v.34 no.12
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    • pp.29-42
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    • 2018
  • Shale and mudstone in Daegu-Gyungbuk area have low strength and resistance to weathering compared to other rocks. Therefore, it is necessary to evaluate their strength depending on the degree of saturation and crack development. In this study, shales and mudstones were collected from several construction sites in Daegu-Gyungbuk area. Their basic material properties such as porosity, SEM, chemical component, and durability were tested. A porosity (absorptivity) of mudstone was 31% (25%), which was 6 (8) times higher than that of shale. Some mudstone was easily disintegrated with water and it consisted of highly-active clay mineral such as smectite type. These rocks were prepared by small cube specimens for unconfined compression test. An unconfined compressive strength of dry rock was compared with saturated one. Microwave oven was operated step by step to stimulate void water within a saturated rock, which resulted into high temperature and micro crack initiation within rocks. A strength of microwaved rocks was compared with operation time and crack initiation. As a result, the average unconfined compressive strength of dry and saturated shale was 62 and 33 MPa, respectively. The strength of mudstone for each condition was 11 and 4 MPa. When a rock became saturated, its strength decreased by 47% and 64% for shale and mudstone at average. In addition to saturation, a rock was in the microwave for 15 secs, its strength decreased into 49% for shale and 52% for mudstone. When a microwave oven operated up to 20 sec, a rock was crushed into several pieces and its temperature was approximately 200 degrees.

Estimation of CO2 Net Atmospheric Flux in the Middle and Lower Nakdong River, and Influence Factors Analysis (낙동강 중하류에서 이산화탄소 순배출 플럭스 산정 및 영향인자 분석)

  • Lee, Eunju;Chung, Sewoong;Park, Hyungseok;Kim, Sungjin;Park, Daeyeon
    • Journal of Korean Society on Water Environment
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    • v.35 no.4
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    • pp.316-331
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    • 2019
  • Carbon dioxide($CO_2$) emission from rivers to the atmosphere is a key component in the global carbon cycle. Most of the rivers are supersaturated with $CO_2$. At a global scale, the amount of $CO_2$ emission from rivers is reported to be five-fold greater than that from lakes and reservoirs, but relevant data are rare in Korea. The objectives of this study is to estimate the $CO_2$ net atmospheric flux(NAF) from the upstream of Gangjeong-Goryeong Weir(GGW), Dalseong Weir(DSW), Hapcheon-Changnyeong Weir(HCW), and Changnyeong-Haman Weir(CHW) located in Nakdong River South Korea) using field and laboratory experiments and to apply data mining techniques to develop parsimonious prediction models that can be used to estimate $CO_2$ NAF with physical and water quality variables that can be collected easily. As a result, the study sites were all heterotrophic systems that often released $CO_2$ to the atmosphere, except when the algal photosynthesis was active.The median $CO_2$ NAF was minimum $391.5mg-CO_2/m^2$ day at GGW and maximum $1472.7mg-CO_2/m^2$ day at DSW. The $CO_2$ NAF showed a negative correlation with pH and Chl-a since the overgrowth of the algae consumed $CO_2$ in the water and increased the pH. As the parsimonious multiple regression model and random forest model developed, this study showed an excellent performance with the $Adj.R^2$ value higher than 0.77 in all weirs. Thus, these methods can be used to estimate $CO_2$ NAF in the river even if there is no $pCO_2$ measurement data.

Relationship between Body Size Variation and Habitat Environment of Hyla japonica in Jeju Island, South Korea (제주도에 서식하는 청개구리 Hyla japonica의 크기 다양성과 서식지 환경과의 관계)

  • Koo, Kyo Soung;Kwon, Sera;Park, Il Kook;Oh, Hong-Shik
    • Korean Journal of Environment and Ecology
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    • v.32 no.6
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    • pp.575-581
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    • 2018
  • The relationship between the body size of species and the environment has been an active research subject for many years. Until recently, studies had focused on the relationship between the body size and environment based on the ecogeographic rule for various animal groups. In this study, we examined the relationship between body size of Hyla japonica and the habitat environment in Jeju island located at the southernmost part of the Korean peninsula. We collected H. japonica from three breeding sites, Cheonji, Bonggae, and Aewol, and measured SVL, BW, and HW of the species. We also measured the altitude, longitude, latitude, annual mean temperature, and annual mean precipitation of each site to analyze the relationship between the body size and the habitat environment. The analysis results showed that there was the clear difference of the body size according to the habitat and the body size in Aewol was significantly bigger than others, while the body size in Cheonji was the smallest. The altitude was the most important environmental variable and showed a positive correlation with body size. The body size of H. japonica increased as the altitude increased, and this results were consistent with Bergmann's rule, one of the biological laws related to body size. In conclusion, the environment could affect the body size of H. japonica, and the body size has a certain direction according to the environment.

An Overview on Vibration or Wave Therapy in Korea (진동, 파동치료에 관한 국내 연구 동향)

  • Lee, Jae Heung;Beag, Ji You;Chang, Sung Jin;Pil, Gam Mai
    • Journal of Korean Medical Ki-Gong Academy
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    • v.20 no.1
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    • pp.15-67
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    • 2020
  • Objective : The purpose of this study is to identify the trends of vibration(or wave) therapy in Korea, to actively utilize vibration(or wave) therapy, and to help research activities of vibration therapy in Korean Medicine. Methods : The following Korean words "진동기", "진동요법", "진동운동", "진동치료", "파동요법", "파동운동", "파동치료" were searched on three specialized search sites (RISS, NAL, DBpia). Trends of vibration therapy were analyzed through the selected researches suitable for this study among these searched researches in an overview format. Results : 1. A total of 8,116 studies were searched and a total of 365 studies were finally selected 2. From 2000 to 2019, when research began to increase in earnest, there were 17.45±10.28 studies per year, and the AGR(Average Annual Growth Rate) was 11.92%. 3. In the main field of research, the 'Medicine and Pharmacy' was the largest with 147(40.16%) studies. In the Middle Field, the 'Kinesiology' was the largest with 99(27.05%) studies. In the study design, 'RCT(Randomized Controlled trial)' was the largest with 138(47.75%) studies. In the Age Group, 'Youth' was the largest with 126(48.84%) studies. 4. The average of the number of participants was 24.90±17.44. 5. The most used Intervention was the 'WBV(Whole Body Vibration)' with 177(61.25%) studies. 6. The average of Intervention Period was 5.99±4.14 weeks, while the maximum was 36 weeks. 7. The journal that published the most research papers is 'K. J. of Sports Science(체육과학연구;13)', and the society is 'Rehabilitation Engineering And Assistive Technology Society of Korea(한국재활복지공학회; 14)'. The University that published the most dissertations is 'Sahmyook University(11)'. 8. The authors who published the most studies are Ju-Hwan O(8) as the main author and Tae Kyu Kwon(18) as the co-author (including the thesis Director). In an integrated analysis of the authors and co-authors, Tae Kyu Kwon published the most numerous studies(19) Conclusions : 1. The study of vibration or wave therapy has been increasing noticeably every year. 2. The major academic Fields studying vibration or wave therapy are the 'Kinesiologic Field', 'Physical Therapy Field', and 'Biomedical Engineering Field'. 3. The most chosen method of study design on vibration or wave treatment was 'RCT', and there was no significant change in the annual presentation rate. 4. Types of vibration or wave therapy could be classified as 'LVS(Local Vibration Stimulation)', 'WBV(Whole Body Vibration)', 'MV(Micro Vibration)', 'BV(Bio Vibration)' and 'SWV(Sound Wave Vibration)', and the study on Whole Body Vibration is most active. 5. Most of the studies of vibration or wave therapy were on musculoskeletal systems, but there were very few studies on internal diseases.

A Study on the Evaluation of Urban Regeneration Project Sites Using the Density and Diversity Indicators of New Startup Stores (신규 창업점포의 밀도 및 다양성 지표를 활용한 도시재생사업 대상지 평가에 관한 연구)

  • Jang, Seongman;Park, Yongsu
    • Journal of the Korean Regional Science Association
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    • v.37 no.2
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    • pp.3-16
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    • 2021
  • This study analyzed various indicators of new stores targeting urban regeneration areas and compared them with the control group to evaluate the possibility of revitalization of areas where urban regeneration projects are taking place. The results of the study are divided into three categories. First, the density of new start-ups in urban regeneration areas was higher than that of the control group. Through this, urban regeneration areas will bring about an influx of new floating populations and will act as a positive factor in local revitalization. Second, the urban regeneration areas and the control group were compared based on the business type of new start-up stores. As a result of the analysis, urban regeneration areas have a high proportion of industries targeting the active population, not residents. This will promote local activation by attracting the daytime population. Third, the urban regeneration areas and the control group were compared based on the diversity of the business types of newly established stores. As a result of the analysis, urban regeneration areas in metropolitan cities will induce multipurpose shopping for consumers as stores selling different products are concentrated. On the other hand, urban regeneration areas in small cities will induce consumers to compare shopping as stores selling similar products are concentrated.

A Study on Evaluation System of Risk Assessment at Coastal Activity Areas (연안활동장소의 위험도 평가체계 수립 연구)

  • Park, Seon Jung;Park, Seol Hwa;Seo, Heui Jung;Park, Seung Min
    • Journal of Korean Society of Coastal and Ocean Engineers
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    • v.33 no.6
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    • pp.226-237
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    • 2021
  • Coastal safety accidents are characterized by a high proportion of human negligence and repeated occurrences of accidents caused by the same factors. The Korea Coast Guard prepares and implements various countermeasures to prevent accidents at coastal safety accident sites. However, there is a shortage of safety facilities and safety management personnel according to the limited budget. In addition, the ability to be proactively and proactively respond is low due to the limitations of the coastal safety accident risk forecasting system, which relies on the meteorological warning of the Korea Meteorological Administration. In this study, as part of preparing the foundation for establishing a preemptive and active coastal safety management system that can manage accident-causing factors, predict and evaluate risk, and implement response and mitigation measures after an accident occurs before coastal safety accidents occur. The establishment of a risk assessment system was proposed. The main evaluation factors and indicators for risk assessment were established through the analysis of the status of coastal safety accidents. The risk assessment methodology was applied to 40 major hazardous areas designated and managed by the Korea Coast Guard.

Selection and Application of Pollinating Insects to Improve Seed Production of Buckwheat in Net House (메밀의 망실재배시 종자생산성 향상을 위한 수분곤충의 선발과 활용법 구명)

  • Kim, Su Jeong;Sohn, Hwang Bae;Nam, Jeong Hwan;Lee, Jong Nam;Suh, Jong Taek;Chang, Dong Chil;Kim, Yul Ho
    • Korean Journal of Plant Resources
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    • v.35 no.1
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    • pp.10-22
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    • 2022
  • This study investigated field data to understand the spatio-temporal distribution of pollinating insects and buckwheat flowers. We set the in-situ observation sites in different locations to get altitude and cropping system distribution data for five years (2016 to 2020) in Korea. Twenty-five different insect species, belonging to 8 orders, were recorded. Over the past five years, species from the orders Diptera and Hymenoptera were the principal visitors. Hymenoptera was mainly represented by honey bees (Apis cerana), while Diptera was represented by bean seed fly (Delia platura) and several other species. Some bees and other Hymenoptera species could, however, act as co-pollinators because of their high relative frequency and activity. Compared with open-field cultivation (conventional), the pollination mediating effect of flies and bees was superior in net house, so the yield was high, and it was also found to be slightly higher in the mixed treatment of flies and bees than in the single treatment. Based on the above results, flies and bees were found to be the most active pollinating insects in buckwheat and it is necessary to actively utilize the selected insects to improve buckwheat productivity. This relationship will be utilized in establishing the system of seed production on pollinating regulation of a primary plant.

Nanofibers Comprising Mo2C/Mo2N Nanoparticles and Reduced Graphene Oxide as Functional Interlayers for Lithium-Sulfur Batteries (Mo2C/Mo2N 나노 입자와 환원된 그래핀 옥사이드가 복합된 나노 섬유 중간층이 적용된 리튬-황 전지)

  • Lee, Jae Seob;Yang, Ji Hoon;Cho, Jung Sang
    • Korean Chemical Engineering Research
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    • v.60 no.4
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    • pp.574-581
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    • 2022
  • Nanofibers comprising reduced graphene oxide (rGO) and Mo2C/Mo2N nanoparticles (Mo2C/Mo2N rGO NFs) were prepared for a functional interlayer of Li-S batteries (LSBs). The well-dispersed Mo2C and Mo2N nanoparticles in the nanofiber structure served as active polar sites for efficient immobilization of dissolved lithium polysulfide. The rGO nanosheets in the structure also provide conductive channels for fast ion/electron transport during charging-discharging and ensured reuse of lithium polysulfide during redox reactions through a fast charge transfer process. As a result, the cell assembled with Mo2C/Mo2N rGO NFs-coated separator and pure sulfur electrode (70 wt% of sulfur content and 2.1 mg cm-2 of sulfur loading) showed a stable discharge capacity of 476 mA h g-1 after 400 charge-discharge cycles at 0.1 C. Furthermore, it exhibited a discharge capacity of 574 mA h g-1 even at a high current density of 1.0 C. Therefore, we believe that the proposed unique nanostructure synthesis strategy could provide new insights into the development of sustainable and highly conductive polar materials as functional interlayers for high performance LSBs.