• Title/Summary/Keyword: WGS

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Generation and analysis of whole-genome sequencing data in human mammary epithelial cells

  • Jong-Lyul Park;Jae-Yoon Kim;Seon-Young Kim;Yong Sun Lee
    • Genomics & Informatics
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    • v.21 no.1
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    • pp.11.1-11.5
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    • 2023
  • Breast cancer is the most common cancer worldwide, and advanced breast cancer with metastases is incurable mainly with currently available therapies. Therefore, it is essential to understand molecular characteristics during the progression of breast carcinogenesis. Here, we report a dataset of whole genomes from the human mammary epithelial cell system derived from a reduction mammoplasty specimen. This system comprises pre-stasis 184D cells, considered normal, and seven cell lines along cancer progression series that are immortalized or additionally acquired anchorage-independent growth. Our analysis of the whole-genome sequencing (WGS) data indicates that those seven cancer progression series cells have somatic mutations whose number ranges from 8,393 to 39,564 (with an average of 30,591) compared to 184D cells. These WGS data and our mutation analysis will provide helpful information to identify driver mutations and elucidate molecular mechanisms for breast carcinogenesis.

A Study on Cu Based Catalysts for Water Gas Shift Reaction to Produce Hydrogen from Waste-Derived Synthesis Gas (폐기물 가스화 합성가스로부터 수소 생산을 위한 수성가스전이 반응용 Cu 기반 촉매 연구)

  • Na, Hyun-Suk;Jeong, Dae-Woon;Jang, Won-Jun;Lee, Yeol-Lim;Roh, Hyun-Seog
    • Transactions of the Korean hydrogen and new energy society
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    • v.25 no.3
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    • pp.227-233
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    • 2014
  • Simulated waste-derived synthesis gas has been tested for hydrogen production through water-gas shift (WGS) reaction over supported Cu catalysts prepared by co-precipitation method. $CeO_2$, $ZrO_2$, MgO, and $Al_2O_3$ were employed as supports for WGS reaction in this study. $Cu-CeO_2$ catalyst exhibited excellent catalytic activity as well as 100% $CO_2$ selectivity for WGS in severe conditions ($GHSV=40,206h^{-1}$ and CO concentration = 38.0%). In addition, $Cu-CeO_2$ catalyst showed stable CO conversion for 20h without detectable catalyst deactivation. The high activity and stability of $Cu-CeO_2$ catalyst are correlated to its easier reducibility, high oxygen mobility/storage capacity of $CeO_2$.

Optimal Reserve Allocation to Maximize Kinetic Energy in a Wind Power Plant

  • Yoon, Gihwan;Lee, Hyewon;Lee, Jinsik;Yoon, Gi-Gab;Park, Jong Keun;Kang, Yong Cheol
    • Journal of Electrical Engineering and Technology
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    • v.10 no.5
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    • pp.1950-1957
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    • 2015
  • Modern wind generators (WGs) are forced or encouraged to participate in frequency control in the form of inertial and/or primary control to improve the frequency stability of power systems. To participate in primary control, WGs should perform deloaded operation that maintains reserve power using speed and/or pitch-angle control. This paper proposes an optimization formulation that allocates the required reserve to WGs to maximize the kinetic energy (KE) stored in a wind power plant (WPP). The proposed optimization formulation considers the rotor speed margin of each WG to the maximum speed limit, which is different from each other because of the wake effects in a WPP. As a result, the proposed formulation allows a WG with a lower rotor speed to retain more KE in the WPP. The performance of the proposed formulation was investigated in a 100-MW WPP consisting of 20 units of 5-MW permanent magnet synchronous generators using an EMTP-RV simulator. The results show that the proposed formulation retains the maximum amount of KE with the same reserve and successfully increases the frequency nadir in a power system by releasing the stored KE in a WPP in the case of a disturbance.

High Resolution Whole Genome Multilocus Sequence Typing (wgMLST) Schemes for Salmonella enterica Weltevreden Epidemiologic Investigations

  • Tadee, Pakpoom;Tadee, Phacharaporn;Hitchings, Matthew D.;Pascoe, Ben;Sheppard, Samuel K.;Patchanee, Prapas
    • Microbiology and Biotechnology Letters
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    • v.46 no.2
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    • pp.162-170
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    • 2018
  • Non-typhoidal Salmonella is one of the main pathogens causing food-borne illness in humans, with up to 20% of cases resulting from consumption of pork products. Over the gastroenteritis signs, multidrug resistant Salmonella has arisen. In this study, pan-susceptible phenotypic strains of Salmonella enterica serotype Weltevreden recovered from pig production chain in Chiang Mai, Thailand during 2012-2014 were chosen for analysis. The aim of this study was to use whole genome sequencing (WGS) data with an emphasis on antimicrobial resistance gene investigation to assess their pathogenic potential and genetic diversity determination based on whole genome Multilocus Sequence Typing (wgMLST) to expand epidemiological knowledge and to provide additional guidance for disease control. Analyis using ResFinder 3.0 for WGS database tracing found that one of pan-susceptible phenotypic strain carried five classes of resistance genes: aminoglycoside, beta-lactam, phenicol, sulfonamide, and tetracycline associated genes. Twenty four and 36 loci differences were detected by core genome Multilocus Sequence Typing (cgMLST) and pan genome Multilocus Sequence Typing (pgMLST), respectively, in two matching strains (44/13 vs A543057 and A543056 vs 204/13) initially assigned by conventional MLST and Pulsed-field Gel Electrophoresis (PFGE). One hundread percent discriminant ability can be achieved using the wgMLST technique. WGS is currently the ultimate molecular technique for various in-depth studies. As the findings stated above, a new of "gold standard typing method era" for routine works in genome study is being set.

Comparison of Quench Methods in The Coal Gasification System with Carbon Capture (CO2 포집을 포함한 석탄 가스화 시스템에서 급냉 방법에 따른 비교)

  • Lee, Joong-Won;Kim, Ui-Sik;Ko, Kyung-Ho;Chung, Jae-Hwa;Hong, Jin-Pyo
    • Transactions of the Korean hydrogen and new energy society
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    • v.23 no.3
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    • pp.285-292
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    • 2012
  • The integrated gasification combined cycle (IGCC) system is well known for its high efficiency compared with that of other coal fueled power generation system. IGCC offers substantial advantages over pulverized coal combustion when carbon capture and storage (CCS) is required. Commercial plants employ different types of quenching system to meet the purpose of the system. Depending on that, the downstream units of IGCC can be modeled using different operating conditions and units. In case with $CO_2$ separation and capture, the gasifier product must be converted to hydrogen-rich syngas using Water Gas Shift (WGS) reaction. In most WGS processes, the water gas shift reactor is the biggest and heaviest component because the reaction is relatively slow compared to the other reactions and is inhibited at higher temperatures by thermodynamics. In this study, tehchno-econimic assessments were found according to the quench types and operating conditions in the WGS system. These results can improve the efficiency and reduce the cost of coal gasification.

Hydrogen Conversion of Syngas by Using WGS Reaction in a Coal Gasifier (가스화기에서 WGS 반응을 통한 합성가스의 수소 전환)

  • Lee, See Hoon;Kim, Jung Nam;Eom, Won Hyun;Baek, Il Hyun
    • Transactions of the Korean hydrogen and new energy society
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    • v.24 no.1
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    • pp.12-19
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    • 2013
  • A gasification process with pre-combustion $CO_2$ capture process, which converts coal into environment-friendly synthetic gas, might be promising option for sustainable energy conversion. In the coal gasification for power generation, coal is converted into $H_2$, CO and $CO_2$. To reduce the cost of $CO_2$ capture and to maximize hydrogen production, the removal of CO and the additional production of hydrogen might be needed. In this study, a 2l/min water gas shift system for a coal gasifier has been studied. To control the concentration of major components such as $H_2$, CO, and $CO_2$, MFCs were used in experimental apparatus. The gas concentration in these experiments was equal with syngas concentration from dry coal gasifiers ($H_2$: 25-35, CO: 60-65, $CO_2$: 5-15 vol%). The operation conditions of the WGS system were $200-400^{\circ}C$, 1-10bar. Steam/Carbon ratios were between 2.0 and 5.0. The commercial catalysts were used in the high temperature shift reactor and the low temperature shift reactor. As steam/carbon ratio increased, the conversion (1-$CO_{out}/CO_{in}$) increased from 93% to 97% at the condition of CO: 65, $H_2$: 30, $CO_2$: 5%. However the conversion decreased with increasing of gas flow and temperature. The gas concentration from LTS was $H_2$: 54.7-60.0, $CO_2$: 38.8-44.9, CO: 0.3-1%.

R&D Trends and Unit Processes of Hydrogen Station (수소 스테이션의 연구개발 동향 및 단위공정 기술)

  • Moon, Dong Ju;Lee, Byoung Gwon
    • Korean Chemical Engineering Research
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    • v.43 no.3
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    • pp.331-343
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    • 2005
  • Development of hydrogen station system is an important technology to commercialize fuel cells and fuel cell powered vehicles. Generally, hydrogen station consists of hydrogen production process including desulfurizer, reformer, water gas shift (WGS) reactor and pressure swing adsorption (PSA) apparatus, and post-treatment process including compressor, storage and distributer. In this review, we investigate the R&D trends and prospects of hydrogen station in domestic and foreign countries for opening the hydrogen economy society. Indeed, the reforming of fossil fuels for hydrogen production will be essential technology until the ultimate process that may be water hydrolysis using renewable energy source such as solar energy, wind force etc, will be commercialized in the future. Hence, we also review the research trends on unit technologies such as the desulfurization, reforming reaction of fossil fuels, water gas shift reaction and hydrogen separation for hydrogen station applications.

Effects of Weight-Bearing Training with Elastic Bands on less - Affected Side during Functional Electronic Stimulation on Walking and Balance in Stroke Patients (기능적 전기자극시 비 마비측에 탄력밴드를 적용한 체중지지훈련이 뇌졸중 환자의 보행과 균형에 미치는 영향)

  • Jeong, Chae-min;Woo, Young-Keun;Won, Jong-im;Kim, Su-Jin
    • PNF and Movement
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    • v.20 no.3
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    • pp.417-430
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    • 2022
  • Purpose: The purpose of this study was to examine the effect of weight-bearing training with an elastic band during functional electrical stimulation (FES) on walking and balance functions in stroke patients. Methods: Twenty patients with chronic stroke were divided into an experimental group assigned to weight-bearing training with an elastic band during functional electrical stimulation (FES; n=10) and a control group assigned to weight-bearing training alone during FES (n=10). The patients in both groups attended physical therapy sessions five times a week for four consecutive weeks. The experimental group underwent weight-bearing training with an elastic band during FES five times a week for four weeks. The control group underwent weight-bearing training during FES. Balance parameters were measured before and after the intervention using the Balancia program. Moreover, all patients were evaluated using the Berg Balance Scale (BBS), the Time Up and Go Test (TUGT), and the Wisconsin Gait Scale (WGS) before and after each intervention. Results: The results showed that weight-bearing training with elastic bands during FES and weight-bearing training during FES had a significant effect on the affected side's weight-bearing ratio, BBS, TUGT, and WGS in both groups (p <0.05). Additionally, the results showed that the changes observed in the two groups indicate significant differences in path length, average speed, BBS score, TUGT time, and WGS score between the groups (p < 0.05). Conclusion: In patients with stroke, weight-bearing training with an elastic band during FES affected on walking and balance. Therefore, it is an optional intervention for the balance and walking ability of stroke patients.

A Study on Technology Status and Project of Hydrogen Production from Coal Gasificiation (석탄가스화를 이용한 수소생산 기술현황 및 프로젝트 분석)

  • Seungmo Ko;Hochang Jang
    • Journal of the Korean Institute of Gas
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    • v.27 no.1
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    • pp.1-12
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    • 2023
  • Coal gasification is a process of incomplete coal combustion to produce a syngas composed of hydrogen and carbon monoxide. It is one of methods to utilize coal cleanly because the process does not emits nitrogen oxides or sulfur oxides and particulate matters. In addition, chemicals can be produced using syngas. Coal gasification is classified as IGCC (Integrated Gasification Combined Cycle), Plasma coal gasification and UCG (Underground Coal Gasification). Recently, WGS (Water Gas Shift) reactor and carbon capture system have been combined to gasifier to produce hydrogen from coal. In this study, the coal gasification and method of hydrogen production from syngas was summarized, and the hydrogen production from coal gasification project was investigated.