• Title/Summary/Keyword: Tree-Reconstruction

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Phylogenetic Relationships Among Six Vetigastropod Subgroups (Mollusca, Gastropoda) Based on 18S rDNA Sequences

  • Yoon, Sook Hee;Kim, Won
    • Molecules and Cells
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    • v.19 no.2
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    • pp.283-288
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    • 2005
  • Complete 18S rDNA sequences were determined for 10 vetigastropods in order to investigate the phylogeny of Vetigastropoda, which is controversial. These sequences were analyzed together with published sequences for nine other vetigastropods and two nerites. With the two nerites as outgroups, the phylogeny was inferred by three analytical methods, neighbor-joining, maximum likelihood, and maximum parsimony. The 18S rDNA sequence data support the monophyly of four vetigastropod superfamilies, the Pleurotomarioidea, the Fissurelloidea, the Haliotoidea, and the Trochoidea. The present results yield the new branching order: (Pleurotomarioidea (Fissurelloidea ((Scissurelloidea, Lepetodriloidea) (Haliotoidea, Trochoidea)))) within the vetigastropod clade.

18S Ribosomal DNA Sequences Provide Insight into the Phylogeny of Patellogastropod Limpets (Mollusca: Gastropoda)

  • Yoon, Sook Hee;Kim, Won
    • Molecules and Cells
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    • v.23 no.1
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    • pp.64-71
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    • 2007
  • To investigate the phylogeny of Patellogastropoda, the complete 18S rDNA sequences of nine patellogastropod limpets Cymbula canescens (Gmelin, 1791), Helcion dunkeri (Krauss, 1848), Patella rustica Linnaeus, 1758, Cellana toreuma (Reeve, 1855), Cellana nigrolineata (Reeve, 1854), Nacella magellanica Gmelin, 1791, Nipponacmea concinna (Lischke, 1870), Niveotectura pallida (Gould, 1859), and Lottia dorsuosa Gould, 1859 were determined. These sequences were then analyzed along with the published 18S rDNA sequences of 35 gastropods, one bivalve, and one chiton species. Phylogenetic trees were constructed by maximum parsimony, maximum likelihood, and Bayesian inference. The results of our 18S rDNA sequence analysis strongly support the monophyly of Patellogastropoda and the existence of three subgroups. Of these, two subgroups, the Patelloidea and Acmaeoidea, are closely related, with branching patterns that can be summarized as [(Cymbula + Helcion) + Patella] and [(Nipponacmea + Lottia) + Niveotectura]. The remaining subgroup, Nacelloidea, emerges as basal and paraphyletic, while its genus Cellana is monophyletic. Our analysis also indicates that the Patellogastropoda have a sister relationship with the order Cocculiniformia within the Gastropoda.

Voice Outcome after Partial Laryngectomy (후두부분절제술 후 음성 결과)

  • Sun, Dong-Il
    • Journal of the Korean Society of Laryngology, Phoniatrics and Logopedics
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    • v.19 no.1
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    • pp.16-20
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    • 2008
  • Excising part or all part of a larynx as a cancer operation results in changes that transgress anatomic, physiologic, psychologic, and social priciples. The quality of life of a patient's life after any given cancer surgery usually is regarded as a second-priority consideration after oncologic safety. With laryngeal surgery, excision of malignant disease typically results in change that significantly influence an individual for the duration of his or her life. Nonetheless, with appropriate rehabilitation the surgical side effects can be minimized to allow for an excellent quality of life. Successful conservation surgery for laryngeal cancer requires careful interdependent selection for patients, lesions and procedure. The technical goal is to minimize trauma to uninvolved tissue and to wisely utilized local tissues or tree flap for reconstruction, while insuring for oncologically sound procedure. Rehabilitation should aim to produce a glottal sound source if possible, however voice therapy to promote false vocal fold vibration and arytenoid to epiglottis source of vibration can produce very satisfactory phonatory results.

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Design of Geocasting in MANET using the Improved LBM

  • Lee, Cheol-Seung;Lee, Joon
    • The Journal of the Korea institute of electronic communication sciences
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    • v.2 no.2
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    • pp.99-105
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    • 2007
  • MANET(Mobile Ad-hoc network) have recently attracted a lot of attention in the research community as well as in industry. Although the previous research mainly focused on various of MANET in routing, we consider, in this paper, how to efficiently support applications such as variable geocasting basd on MANET. The goal of a geocasting protocol is deliver data packet to a group of nodes that are located within a specified geocasting region. Previous research that support geocast service in mobilie computing based on MANET have the non-optimization problem of data delivery path, overhead by frequent reconstruction of the geocast tree, and service disruption problem. In this paper, we propose the mobility pattern based geocast technique using variable service range according to the mobility of destination node and resource reservation to solve this problem. The experimental results show that our proposed mechanism has improved performance of Accessibility & Network Overhead than previous research.

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A Study on the HEVC Video Encoder PMR Block Design (HEVC 비디오 인코더 PMR 블록 설계에 대한 연구)

  • Lee, Sukho;Lee, Jehyun
    • Journal of the Institute of Electronics and Information Engineers
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    • v.53 no.12
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    • pp.141-146
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    • 2016
  • HEVC/H.265 is the latest joint video coding standard proposed by ITU-T SG 16 WP and ISO/IEC JTC 1/SC29/WG 11. In H.265, pictures are divided into a sequence of coding tree units(CTUs), and the CTU further is partitioned into multiple CUs to adapt to various local characteristics. Its coding efficiency is approximately two times high compared to previous standard H.264/AVC. However according to the size of extended CU(coding unit) and transform block, the hardware size of PMR(prediction/mode decision/reconstruction) block within video encoder is about 4 times larger than previous standard. In this study, we propose a new less complex hardware architecture of PMR block which has the most high complexity within encoder without any noticeable PSNR loss. Using this simplified block, we can shrink the overall size the H.265 encoder. For FHD image, it operates at clocking frequency of 300 MHz and frame rate of 60 fps. And also for the test image, the Bjøntegaard Delta (BD) bit rate increase about average 30 % in PMR prediction block, and the total estimated gate count of PMR block is around 1.8 M.

Alveolar Cleft Reconstruction Using Chin Bone and Autogenous Tooth Bone Graft Material: Reports of 5 Cases

  • Jeong, Kyung-In;Lee, Junho;Kim, Kyung-Wook;Um, In-Woong;Hara, Shingo;Mitsugi, Masaharu;Kim, Young-Kyun
    • Journal of Korean Dental Science
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    • v.6 no.1
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    • pp.13-21
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    • 2013
  • Purpose: To report the successful results of using chin bone graft and autogenous tooth bone graft material (AutoBT) in alveolar cleft patients. Materials and Methods: Five patients with alveolar cleft defects underwent alveolar bone grafting. Three patients were treated using chin bone graft, and the other two patients underwent AutoBT graft. After implant site development using chin bone graft in the fi rst three cases, endosseous implant restorations were placed. In case #4 and 5, AutoBT graft material was placed to guide the normal eruption of partially impacted maxillary right canine and to the upper docking site after distraction osteogenesis. Result: Successful implant restorations with closure of the oronasal fistula were achieved in alveolar cleft defect reconstruction using either chin bone graft (Case #1, 2, 3) or AutoBT graft material (Case #4, 5). Case #4 showed enlarged follicle of the right maxillary canine, indicating a normal eruption guide pattern. Conclusion: Both chin bone graft and AutoBT graft showed favorable outcomes in reconstructing alveolar cleft defects. Autogenous tooth bone graft opens up the possibility of avoiding harvesting autogenous bone graft with complications and morbidities.

Signal processing algorithm for converting variable bandwidth in the multiple channel systems (다중채널 시스템에서 가변 대역폭 절환을 위한 신호처리 알고리즘)

  • Yoo, Jae-Ho;Kim, Hyeon-Su;Choi, Dong-Hyun;Chung, Jae-Hak
    • Journal of Satellite, Information and Communications
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    • v.5 no.1
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    • pp.32-37
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    • 2010
  • The algorithm of multiple channel signal processing requires the flexibility of variable frequency band, efficient allocation of transmission power, and flexible frequency band reallocation to satisfy various service types which requires different transmission rates and frequency band. There are three methods including per-channel approach, multiple tree approach, and block approach performing frequency band reallocation method by channelization and dechannelization in the multiple-channel signal. This paper proposes an improved per-channel approach for converting the frequency band of multiple carrier signals efficiently. The proposed algorithm performs decimation and interpolation using CIC(cascaded integrator comb filter), half-band filter, and FIR filter. In addition, it performs filtering of each sub-channel, and reallocates channel band through FIR low-pass filter in the multiple-channel signal. The computer simulation result shows that the perfect reconstruction of output signal and the flexible frequency band reallocation is performed efficiently by the proposed algorithm.

Species and Macroscopic Analysis of Log Piles Used for the ex-Government General of Chosun Building (구 조선총독부 청사 (구 중앙청) 기초말뚝 통나무의 수종과 재질)

  • Park, Won-Kyu;Kim, Yo-Jung
    • Journal of Conservation Science
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    • v.9 no.1
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    • pp.48-52
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    • 2000
  • A hundred wooden foundation piles were found underground during reconstruction for Heungreamun after removing ex-Chosunchongdokbu (ex-Government General of Chosun) building, which was built in 1916, at Kyungbok Palace in Seoul. It is known that larch piles had been collected from the Yaru area near Mt. Baekdu (Changbai). in North Korea. We examined 15 piles for identification of the species and their tree-ring structure. The species is identified as Larix gmelini by microscopic observation. Average diameter of the piles was 27 cm and average age 103 years. We obtained 151 year tree-ring chronology. However, we could not date the exact cutting years because there was no reference chronology yet. When we can obtain chronologies from living trees near the Yaru area, we could make a absolute and longer chronology for studying past history and environments around Mt. Baekdu.

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Simulation of Daily Soil Moisture Content and Reconstruction of Drought Events from the Early 20th Century in Seoul, Korea, using a Hydrological Simulation Model, BROOK

  • Kim, Eun-Shik
    • Journal of Ecology and Environment
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    • v.33 no.1
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    • pp.47-57
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    • 2010
  • To understand day-to-day fluctuations in soil moisture content in Seoul, I simulated daily soil moisture content from 1908 to 2009 using long-term climatic precipitation and temperature data collected at the Surface Synoptic Meteorological Station in Seoul for the last 98 years with a hydrological simulation model, BROOK. The output data set from the BROOK model allowed me to examine day-to-day fluctuations and the severity and duration of droughts in the Seoul area. Although the soil moisture content is highly dependent on the occurrence of precipitation, the pattern of changes in daily soil moisture content was clearly quite different from that of precipitation. Generally, there were several phases in the dynamics of daily soil moisture content. The period from mid-May to late June can be categorized as the initial period of decreasing soil moisture content. With the initiation of the monsoon season in late June, soil moisture content sharply increases until mid-July. From the termination of the rainy season in mid-July, daily soil moisture content decreases again. Highly stochastic events of typhoons from late June to October bring large amount of rain to the Korean peninsula, culminating in late August, and increase the soil moisture content again from late August to early September. From early September until early October, another sharp decrease in soil moisture content was observed. The period from early October to mid-May of the next year can be categorized as a recharging period when soil moisture content shows an increasing trend. It is interesting to note that no statistically significant increase in mean annual soil moisture content in Seoul, Korea was observed over the last 98 years. By simulating daily soil moisture content, I was also able to reconstruct drought phenomena to understand the severity and duration of droughts in Seoul area. During the period from 1908 to 2009, droughts in the years 1913, 1979, 1939, and 2006 were categorized as 'severe' and those in 1988 and 1982 were categorized as 'extreme'. This information provides ecologists with further potential to interpret natural phenomenon, including tree growth and the decline of tree species in Korea.

3-D Lossy Volumetric Medical Image Compression with Overlapping method and SPIHT Algorithm and Lifting Steps (Overlapping method와 SPIHT Algorithm과 Lifting Steps을 이용한 3차원 손실 의료 영상 압축 방법)

  • 김영섭
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.4 no.3
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    • pp.263-269
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    • 2003
  • This paper focuses on lossy medical image compression methods for medical images that operate on three-dimensional(3D) irreversible integer wavelet transform. We offer an application of the Set Partitioning in Hierarchical Trees(SPIHT) algorithm〔l-3〕to medical images, using a 3-D wavelet decomposition and a 3-D spatial dependence tree. The wavelet decomposition is accomplished with integer wavelet filters implemented with the lifting method, where careful scaling and truncations keep the integer precision small and the transform unitary. As the compression rate increases, the boundaries between adjacent coding units become increasingly visible. Unlike video, the volume image is examined under static condition, and must not exhibit such boundary artifacts. In order to eliminate them, we utilize overlapping at axial boundaries between adjacent coding units. We have tested our encoder on medical images using different integer filters. Results show that our algorithm with certain filters performs as well. The improvement is visibly manifested as fewer ringing artifacts and noticeably better reconstruction of low contrast.

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