• Title/Summary/Keyword: Total Variation

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Studying the Genetic Diversity and Phenetic Relationships of Porphyra yezoensis Populations in Korea Using Random Amplified Polymorphic DNA (RAPD) (RAPD를 이용한 한국 김 집단의 유전적 다양성과 표현형 관계)

  • Kim, Young-Mog;Eom, Sung-Hwan;Huh, Man Kyu
    • Journal of Life Science
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    • v.29 no.2
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    • pp.152-157
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    • 2019
  • Porphyra yezoensis is a red algal species in the genus Porphyra. The phenetics and genetic diversity of four populations of P. yezoensis in Korea were reconstructed using random amplified polymorphic DNA (RAPD) markers. Overall, 55 fragments were generated among the tested P. yezoensis array with 20 OPERON primers. A total of 30(54.5%) of these bands were polymorphic. The OPA-18-02 band was amplified in the samples of Nakdong population and absent in them of other three populations. The OPA-20-02 band was only amplified in the Seocheon population. Both bands exhibited distinctive patterns in specific populations. The effective number of alleles per locus (Ae) ranged from 1.161 to 1.293 with a mean of 1.366. The Seocheon population had a high expected diversity (0.163). The Nakdong population was an isolated endemic and intertidal zone. Thus the narrow distributed Nakdong population had a low expected diversity (0.092). Shannon's index of phenotypic diversity (I) of the Seocheon population (0.238) was the highest among all populations. Total genetic diversity ($H_T$) varied between 0.132 for OPA-02 and 0.420 for OPA-19. The interlocus variation of genetic diversity ($H_S$) was 0.059 for OPA-18 and 0.339 for OPA-19. On a per locus basis, the proportion of total genetic variation due to differences among populations ($G_{ST}$) ranged from 0.012 for OPA-11 to 0.762 for OPA-18 with a mean of 0.415, indicating that 42% of the total variation was found among these populations. In an assessment of the proportion of diversity present within this species, 58.5% (100%-41.5%) of genetic variation resided within the populations studied. The Nm was estimated to be low (0.705).

Developing Dish-based Food Frequency Questionnaire for the Epidemiology Study of Hypertension Among Korean (고혈압 역학연구를 위한 음식중심 식품섭취빈도 조사표 개발: 2001년 국민건강영양조사 자료 이용)

  • Kim, Mi-Kyung;Yun, Young-Mi;Kim, Young-Ok
    • Korean Journal of Community Nutrition
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    • v.13 no.5
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    • pp.701-712
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    • 2008
  • The purpose of the present study was aimed to identify dish items applicable in developing dish?based food frequency questionnaire (DFFQ) for a hypertension study of Koreans. The 24-hour recall data of 4,401 subjects aged $20{\sim}65$ years from the 2001 Korean National Health and Nutrition Examination Survey were used for the analysis. Logistic regression model was used to identify the nutrient related with hypertension. Energy, fiber, sodium, calcium, carotene, vitamin B1 and vitamin C were associated with hypertension. Selection the top 30 dish items for these seven nutrients was performed based on their degree of contribution in supplying nutrients in terms of the cumulative percent contribution (cPC), as well as on their degree of explanation for between?person variation, in terms of the cumulative regression coefficient (cMRC). Rice supplied 43% of total energy consumption. Korean cabbage and radish kimchi were two major sources of sodium and it also covered the 27% of between person variation of sodium intake. Soybean paste soup and single item of orange?colored fruits supplied 43% of total vitamin C intake for Koreans and it covered the almost 79% of between person variation among the Korean population. Korean cabbage kimchi was the major source of fiber, calcium, sodium, carotene, and vitamin C for Koreans. In summary, the top 30 selected dish items supplying the 78% to 89% of the 7 nutrients. Those items also covered the 79% to 94% of between person variation of the 7 nutrients consumption. Therefore, the selected 30 dish items in each categories of nutrient could be applicable in developing dish based food frequency questionnaire for hypertension study.

A Study on the Performance Improvement with Subband Overlapping Variation for Overlapped Multicarrier DS-CDMA Systems (중복된 멀티캐리어 DS-CDMA 시스템의 서브밴드 중복율 변화에 따른 성능개선에 관한 연구)

  • O, Jeong-Heon;Park, Gwang-Cheol;Kim, Gi-Du
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.37 no.9
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    • pp.11-23
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    • 2000
  • Multicarrier DS-CDMA is an effective approach to realize wideband CDMA system in a multipath fading channel. In this paper, we propose a convolutionally-coded overlapped multicarrier DS-CDMA system, and analyze the performance with subband overlapping variation to determine the overlapping percentage showing best performance. Given a total number of subcarriers M*R, we will show that the BER variation is highly dependent on the rolloff factor P of raised-cosine chip wave-shaping filter irrespective of convolutional encoding rate I/M and repetition coding rate 1/R. We also analyze the possibility of reduction in total MUI by considering both variation of a rolloff factor (0 ($\beta$ :1) and variation of subband overlapping factor (0 ( A :2), and show that the proposed system may outperform the multicarrier DS-CDMA system in [1, 12].

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Phosphorus Speciation and Bioavailability in Intertidal Sediments of Keunso Bay, Yellow Sea During Summer and Winter (서해 근소만 조간대 퇴적물에서 여름과 겨울에 인의 존재형태)

  • Kim, Dong-Seon;Kim, Kyung-Hee
    • Ocean and Polar Research
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    • v.32 no.3
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    • pp.177-186
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    • 2010
  • A sequential extraction technique was used to study sediment phosphorus speciation and its relative importance in the intertidal flat of Keunso Bay during summer and winter for a better understanding of the phosphorus cycle and bioavailability in intertidal sediments. Loosely sorbed P contents were the lowest among the five P-pools and showed little seasonal or spatial variation. Although Fe-bound P contents were almost constant in winter, they decreased rapidly with sediment depth in summer. The dissolution of Fe oxides, used as an oxidant for the anaerobic respiration, ascribed the rapid decrease of Fe-bound P in summer. Al-bound P contents displayed little seasonal variation, but showed a large spatial variation, with higher values in the upper intertidal flat. Comprising about 50% of total P, Ca-bound P contents were the highest among the five P-pools. Ca-bound P contents were higher in winter than summer, but did not exhibit a clear spatial variation. Organic P contents were higher in summer than winter, which was associated with higher primary production and clam biomass in summer. Organic P contents were higher in the lower intertidal flat than the upper intertidal flat. In Keunso Bay, bioavailable P contents of the intertidal flat comprising about one third of total P ranged from 2.41 to 5.09 ${\mu}molg^{-1}$ in summer and 3.82 to 5.29 ${\mu}molg^{-1}$ in winter. The bioavailability of P contents was higher in the lower intertidal flat than the upper intertidal flat, which was attributed to the large clam production in the lower intertidal flat.

Population Genetic Structure of Carassius auratus (Pisces: Cypriniformes) in South Korea Inferred from AFLP Markers: Discordance with Mitochondrial Genetic Structure

  • Jung, Jongwoo
    • Animal Systematics, Evolution and Diversity
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    • v.29 no.1
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    • pp.18-22
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    • 2013
  • A recent study on the mitochondrial genetic variation of the Carassius auratus population in South Korea suggested that there are 3 distinct mitochondrial lineages in the country, and that they are geographically separated between westward rivers and southward rivers, respectively. In this study, the population genetic structure of amplified fragment length polymorphism (AFLP) of Carassius auratus was investigated. The results of analysis of molecular variance (AMOVA) supported the geographic distinction between westward and southward river populations, but only 3.66% of total genetic variance lies among these populations. The panmicticity of the AFLP genetic variation is backed up by the results of the neighbor-joining dendrogram drawn from a linearized pairwise $F_{ST}$ matrix and Bayesian clustering analysis. The discordance of genetic structure between mitochondrial and AFLP genetic variation may come from difference in effective population size between these markers and/or gene flow between westward and southward river populations through river capture events.

A New Programming Method to Alleviate the Program Speed Variation in Three-Dimensional Stacked Array NAND Flash Memory

  • Kim, Yoon;Seo, Joo Yun;Lee, Sang-Ho;Park, Byung-Gook
    • JSTS:Journal of Semiconductor Technology and Science
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    • v.14 no.5
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    • pp.566-571
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    • 2014
  • Channel-stacked 3D NAND flash memory is very promising candidate for the next-generation NAND flash memory. However, there is an inherent issue on cell size variation between stacked channels due to the declined etch slope. In this paper, the effect of the cell variation on the incremental step pulse programming (ISPP) characteristics is studied with 3D TCAD simulation. The ISPP slope degradation of elliptical channel is investigated. To solve that problem, a new programming method is proposed, and we can alleviate the $V_T$ variation among cells and reduce the total programming time.

An Interpretation of Process Capability Index and Process Performance Index

  • Nam, Ho-Soo
    • Journal of the Korean Data and Information Science Society
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    • v.13 no.2
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    • pp.285-294
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    • 2002
  • The control chart is widely used tool for monitoring of the process. This paper deals with an interpretation of the process capability index(PCI) and process performance index(PPI) when the control chart is used for monitoring of the process. The main difference between the PCI and PPI is how we did estimate the process deviation. The PCI uses the within process variation and the PPI uses the total process variation, which is conceptually defined as sum of between process variation and within process variation. Easy interpretations of the PCI and PPI for field engineers are described. And some new approaches to interpretation of the process capability and performance index may be useful in early stabilization of new process.

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LONG-TERM STREAMFLOW SENSITIVITY TO RAINFALL VARIABILITY UNDER IPCC SRES CLIMATE CHANGE SCENARIO

  • Kang, Boo-sik;Jorge a. ramirez, Jorge-A.-Ramirez
    • Water Engineering Research
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    • v.5 no.2
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    • pp.81-99
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    • 2004
  • Long term streamflow regime under virtual climate change scenario was examined. Rainfall forecast simulation of the Canadian Global Coupled Model (CGCM2) of the Canadian Climate Center for modeling and analysis for the IPCC SRES B2 scenario was used for analysis. The B2 scenario envisions slower population growth (10.4 billion by 2010) with a more rapidly evolving economy and more emphasis on environmental protection. The relatively large scale of GCM hinders the accurate computation of the important streamflow characteristics such as the peak flow rate and lag time, etc. The GCM rainfall with more than 100km scale was downscaled to 2km-scale using the space-time stochastic random cascade model. The HEC-HMS was used for distributed hydrologic model which can take the grid rainfall as input data. The result illustrates that the annual variation of the total runoff and the peak flow can be much greater than rainfall variation, which means actual impact of rainfall variation for the available water resources can be much greater than the extent of the rainfall variation.

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Seasonal Variation of Edible Portion Yield and Coefficient of Fatness of Pacific Oyster (Crassostrea gigas) in Kamak Bay, Korea

  • Park Choon-Kyu
    • Fisheries and Aquatic Sciences
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    • v.6 no.4
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    • pp.220-224
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    • 2003
  • In order to determined the appropriate processing season of Pacific oyster (Crassostrea gigas), 30 individuals cultured in Kamak Bay on the southern coast of Korea were taken bimonthly 7 times a year, and seasonal variation of edible portion weight, edible portion yield and coefficient of fatness were investigated. There were close relationships between edible portion weight (X) and total weight (Y) and between coefficient of fatness (X) and edible portion yield (Y), which were expressed in regression lines, i.e. Y=0.2709X-1.9094 (r=0.9254) and Y=44.0596X+ 15.1127 (r=0.8485), respectively. From the results of seasonal variation of edible portion weight, yield and coefficient of fatness, the appropriate processing season of raw Pacific oyster was between winter and spring, that is, between December and following April the next year.

Robust Control against Voltage Source Variation for PWM Converters of the High Speed Traction (고속철도 차량용 PWM 컨버터의 전원전압 변동에 강인한 제어)

  • Park, Byoung-Gun;Lee, Woo-Cheol;Hyun, Dong-Seok
    • Proceedings of the KSR Conference
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    • 2010.06a
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    • pp.1271-1278
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    • 2010
  • High-speed traction has voltage source variation because the electric power of tractions is supplied by difference traction power system according to operating section. This paper proposes the robust control maintaining constant output performance against voltage source variation for PWM converters of the high speed traction. The proposed scheme consists of feed-forward compensation for current controller by on-line calculating the rms voltage of voltage source. Total dynamic performance of high speed traction can be improved by the reduction of the output voltage ripple which is resulted from voltage source sag and variation. The superior performance and validity of the proposed scheme is proved through the simulation.

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