• 제목/요약/키워드: Threshold Animal Model

검색결과 62건 처리시간 0.025초

특정 종돈집단의 임신기간, 이유후초종부일, 총산자수 및 사산에 대한 유전모수 추정 (Estimation of Genetic Parameters for Gestation Length, Wean to First Service, Litter Size and Stillborn Piglets in a Closed Nucleus Swine Breeding Herd)

  • 이득환;손지현
    • Journal of Animal Science and Technology
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    • 제55권5호
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    • pp.389-398
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    • 2013
  • 본 연구는 폐쇄종돈군을 유지하면서 장기간 선발육종을 실시한 Landrace 및 Yorkshire 모계 종돈집단에서 임신기간, 총산자수, 이유후초종부일 및 사산두수에 대한 유전적 변이성을 제시함으로써 이들 형질들에 대한 선발지표에 참고자료를 제시하고자 실시하였다. 분석에 이용된 자료는 상기의 형질들에 대하여 사전 이상치를 제외한 후, Landrace 품종에서 1,910두의 모돈으로부터 수집된 7,616복의 기록 및 Yorkshire 품종 2283두의 모돈으로부터 수집된 총 10,454복의 기록을 이용하였다. 분석형질들에 대한 유전변이를 추정하기 위하여 상기의 4개 형질을 동시에 고려한 혼합모형을 설정하였으며, 특히 사산두수에 대하여는 정규성에 크게 위배되기 때문에 범주형 자료로 가정하여 다형질 선형-임계형 반복동물개체모형을 설정하여 분석하였다. 분석방법으로서는 Bayesian 추론의 일종인 Gibbs Sampling (GS) 방법에 의하여 모수의 사후분포 함수로부터 모수에 대한 GS을 50,000회 실시하고 burn-in을 제외한 후 모수의 사후분포에 대한 통계량을 제시하였다. 유전변이를 추정한 결과, 임신기간에 대한 유전력은 0.21~0.35로 추정되었고, 이유후초종부일에서는 0.16~0.23, 총산자수는 0.14~0.16 및 사산두수에 있어서는 0.09~0.10으로 추정되었다. 임신기간에 대한 유전상관 추정치는 총산자수 및 사산두수에서 부의 상관을 갖는 것으로 추정되었고 총산자수와 사산두수와는 정의 상관을 갖는 것으로 추정되었다. 총산자수와 이유후초발정일 간의 유전상관은 낮은 부의 상관을 갖는 것으로 추정되었으며 임신기간과 이유후 초종부일 간에는 유전적 상관관계가 매우 미약한 것으로 분석되었다. 따라서 총산자수를 개량하고자 할 때, 사산두수를 고려하여 선발지표를 설정함이 타당할 것으로 판단되었다.

한우 및 젖소농장 발생 악취의 확산특성 연구 (A Study on Dispersion Characteristics of Odor from Hanwoo and Dairy Farms)

  • 김두환;하덕민;이재영;김희호;송준익
    • 한국축산시설환경학회지
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    • 제21권1호
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    • pp.1-8
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    • 2015
  • This study was conducted to investigate the dispersion prediction of odor from Hanwoo and dairy farms. Gaussian Plume model used in considering of farm size, wind velocity, atmospheric stability and threshold odor unit to prediction of odor dispersion based on the survey on current state of odor emission and control from 9 site of Hanwoo and 9 site of dairy farms. Farm size, wind velocity and atmospheric stability were affected the distance of odor dispersion, showed longer distance in cases of large farm, low wind velocity and stable atmospheric condition. We will suggestion the adjusted distance of odor dispersion according to farm size was estimated to 50~100 m in Hanwoo farm and 50~150 m in dairy farm when apply the 3OU, 5 m/s wind velocity and stable atmospheric condition.

Detection of Imprinted Quantitative Trait Loci (QTL) for Growth Traits in Pigs

  • Lee, H.K.;Lee, S.S.;Kim, T.H.;Jeon, G.J.;Jung, H.W.;Shin, Y.S.;Han, J.Y.;Choi, B.H.;Cheong, I.C.
    • Asian-Australasian Journal of Animal Sciences
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    • 제16권8호
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    • pp.1087-1092
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    • 2003
  • As an experimental reference population, crosses between Korean native pig and Landraces were established and information on growth traits was recorded. Animals were genotyped for 24 microsatellite markers covering chromosomes 2, 6, and 7 for partial-genome scan to identify chromosomal regions that have effects on growth traits. quantitative trait loci (QTL) effects were estimated using interval mapping by the regression method under the line cross models with a test for imprinting effects. For test of presence of QTL, chromosome-wide and single position significance thresholds were estimated by permutation test and normal significance threshold for the imprinting test were derived. For tests against the Mendelian model, additive and dominance coefficients were permuted within individuals. Thresholds (5% chromosome-wide) against the no-QTL model for the analyzed traits ranged from 4.57 to 4.99 for the Mendelian model and from 4.14 to 4.67 for the imprinting model, respectively. Partial-genome scan revealed significant evidence for 4 QTL affecting growth traits, and 2 out of the 4 QTLs were imprinted. This study demonstrated that testing for imprinting should become a standard procedure to unravel the genetic control of multi-factorial traits. The models and tests developed in this study allowed the detection and evaluation of imprinted QTL.

양돈장 발생 악취의 확산특성 연구 (A Study on Dispersion Characteristics of Odor from Swine Farms)

  • 김두환;하덕민;이인복;최동윤;송준익
    • 한국축산시설환경학회지
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    • 제20권2호
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    • pp.41-48
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    • 2014
  • This study was conducted to investigate the dispersion prediction of odor from swine farms in Korea. Gaussian Plume model used in considering of farm size, wind velocity, atmospheric stability and threshold odor unit to prediction of odor dispersion based on the survey on current state of odor emission and control from 48 site of swine farms. Farm size, wind velocity and atmospheric stability were affected the distance of odor dispersion, showed longer distance in cases of large farm, low wind velocity and stable atmospheric condition. We will suggestion the adjusted distance of odor dispersion according to farm size was estimated to 180 m in small farm and 320 m in large farm when apply the 3 OU, 5 m/s wind velocity and stable atmospheric condition.

BES 기법을 이용한 육계사 내부 고온 스트레스 평가를 위한 THI 지수 모의 (Estimation of THI Index to Evaluate Thermal Stress of Animal-occupied Zone in a Broiler House Using BES Method)

  • 하태환;권경석;홍세운;최희철;이준엽;이동현;우샘이;양가영;김락우;여욱현;이상연;이인복
    • 한국농공학회논문집
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    • 제60권2호
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    • pp.75-84
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    • 2018
  • Thermal stress of livestock has been issued due to recent climate change trends and this causes reproductive disorders, decreased feed consumption, immunosuppression, and increased mortality of animals. Concept of THI has been widely used to quantitatively evaluate the degree of thermal stress for animals, however use of this concept is restricted for animals living in the enclosed facilities such as mechanically ventilated broiler houses. In this study, time-based internal energy flow and variation trends of temperature and humidity were analyzed based on BES technique. Local weather data, insulation characteristics of building materials, heat and moisture generation rate from broilers according to age, algorithm of ventilation operation were adopted for boundary condition of the model to accurately compute THI values inside the mechanically ventilated broiler house. From the BES computation, excess frequency of THI threshold in Jeju city was highest on the assumption that air conditioning equipments were not installed. When general raising density ($39kg\;m^{-2}$) was adopted, total 2,191 hours were exceeded. Excess hours of THI threshold were strongly related to the cumulative air temperature ($R^2=0.87$).

Increased calcium-mediated cerebral processes after peripheral injury: possible role of the brain in complex regional pain syndrome

  • Nahm, Francis Sahngun;Lee, Jae-Sung;Lee, Pyung-Bok;Choi, Eunjoo;Han, Woong Ki;Nahm, Sang-Soep
    • The Korean Journal of Pain
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    • 제33권2호
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    • pp.131-137
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    • 2020
  • Background: Among various diseases that accompany pain, complex regional pain syndrome (CRPS) is one of the most frustrating for patients and physicians. Recently, many studies have shown functional and anatomical abnormalities in the brains of patients with CRPS. The calcium-related signaling pathway is important in various physiologic processes via calmodulin (CaM) and calcium-calmodulin kinase 2 (CaMK2). To investigate the cerebral mechanism of CRPS, we measured changes in CaM and CaMK2 expression in the cerebrum in CRPS animal models. Methods: The chronic post-ischemia pain model was employed for CRPS model generation. After generation of the animal models, the animals were categorized into three groups based on changes in the withdrawal threshold for the affected limb: CRPS-positive (P), CRPS-negative (N), and control (C) groups. Western blot analysis was performed to measure CaM and CaMK2 expression in the rat cerebrum. Results: Animals with a decreased withdrawal threshold (group P) showed a significant increment in cerebral CaM and CaMK2 expression (P = 0.013 and P = 0.021, respectively). However, groups N and C showed no difference in CaM and CaMK2 expression. Conclusions: The calcium-mediated cerebral process occurs after peripheral injury in CRPS, and there can be a relationship between the cerebrum and the pathogenesis of CRPS.

식품중 미생물 위해성평가 방법론 연구 (Study on the Methodology of the Microbial Risk Assessment in Food)

  • 이효민;최시내;윤은경;한지연;김창민;김길생
    • 한국식품위생안전성학회지
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    • 제14권4호
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    • pp.319-326
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    • 1999
  • 최근 국내에서는 Escherichia coli O157:H7, Listeria monocytogenes등의 미생물에 대한 건강위해성이 강조되면서 미생물 위해성평가에 대한 필요성이 제기되고 있고, U.S.FPA, U.S.DA, FAO/WHO를 비롯한 국제기구 및 외국 유관기관들에서도 미생물 위해성평가 방법을 식품관리에 활용하고자 방법론 연구에 주력하고 있다. 미생물 위험성은 화학물질과 달리 인체건강에 대한 영향이 즉각적이고, 심각하게 나타나 정량적인 위해성평가가 용이하지 않고 유해화학물질과는 다른 평가방법이 요구된다. 식품중 미생물의 위해성평가는 크게 4단계로 구분되는데, 미생물관련질환 추세파악 및 미생물 관련질병에 관한 역학조사 등을 활용하는 위험성확인 단계와 실제 식품원료, 식품가공, 수송, 포장단계 중 식품의 물리적, 화학적 조건에 따른 미생물 변화를 고려하여 식품중 미생물에 대한 노출을 정량화하는 노출평가 단계, 미생물의 용량에 따른 질병발생에 근거하여 용량-반응관계를 규명하는 용량-반응평가 단계, 규명된 모델을 활용하여 모든 평가결과를 통합함으로 위해 도치 예측과 불확실성 분석 등을 수행하는 위해도결정단계로 구성되어 있다. 미생물 용량-반응평가는 크게 비역치(Nonthreshold)와 역치(Threshold) 평가 방법론으로 구분되는데, 비역치 평가방법론은 단일 병원균이 감염을 일으킬 수 있다는 것과 감염을 일으킬 수 있는 확률이 독립적이라는 가정을 전제로 하고, 역치평가방법론은 미생물이 감염을 일으키기 위해서 각기 개별 역치가 존재하는데 어느 정도의 미생물수가 모여 서로 작용해야 독성유발물질을 만들어 낸다는 가정을 전제로 한다. 현재 받아들여지고 있는 비역치 모델로는 Exponential, Beta-poisson, Gompertz, Gamma-weibull 모델 등이 있으며, 역치모델로는 Log-normal, Log-logistic모델 등이 있다. 본 연구에서는 인체 volunteer자료를 활용하여 용량-반응자료를 입력하고 용량-반응자료를 토대로 적합한 수학적 모델을 찾아내어, 선별한 모델의 적합도 검정을 실시하는 방법론 연구를 실시하였으며, 노출평가 자료와 용량-반응평가 결과를 연계하여 위해도를 결정하는 과정에 대해 연구하였다 이 밖에도 모델(Food MicroModel)을 이용하여 식품의 염도, 수분활성도, 온도, pH등의 조건에 따른 미생물의 성장률, 사멸률 등 변화를 예측할 수 있는 방법론 연구를 통해 식품의 최적 보관 조건등을 찾아내는 방법을 습득하였다. 미생물 위해성평가는 외국에서도 아직 초기 연구단계에 있으며 현재로서 사후조사자료인 역학자료보다 건강한 성인남자를 대상으로 한 volunteer 자료를 우선적으로 활용하고 있으나 노약자나 민감그룹에 대한 실험은 현실적으로 불가능하여 동물실험을 이용한 평가방법을 연구중에 있다. 추후 연구방향으로는 국내 volunteer들을 대상으로 한 미생물별 용량-반응결과를 토대로 population sensitivity를 비교할 수 있는 기초자료를 확보함으로써 미생물에 대한 인구집단의 반응 민감성 차이를 비교하고 시료채취 후 즉각적인 실험실적 분석이 가능토록하여 정확한 인체노출평가를 수행함으로써 미생물 위해성평가방법론을 식품미생물관리에 적용하는 것이다.

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A Whole Genome Association Study to Detect Single Nucleotide Polymorphisms for Blood Components (Immunity) in a Cross between Korean Native Pig and Yorkshire

  • Lee, Y.M.;Alam, M.;Choi, B.H.;Kim, K.S.;Kim, Jong-Joo
    • Asian-Australasian Journal of Animal Sciences
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    • 제25권12호
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    • pp.1674-1680
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    • 2012
  • The purpose of this study was to detect significant SNPs for blood components that were related to immunity using high single nucleotide polymorphism (SNP) density panels in a Korean native pig (KNP)${\times}$Yorkshire (YK) cross population. A reciprocal design of KNP${\times}$YK produced 249 $F_2$ individuals that were genotyped for a total of 46,865 available SNPs in the Illumina porcine 60K beadchip. To perform whole genome association analysis (WGA), phenotypes were regressed on each SNP under a simple linear regression model after adjustment for sex and slaughter age. To set up a significance threshold, 0.1% point-wise p value from F distribution was used for each SNP test. Among the significant SNPs for a trait, the best set of SNP markers were determined using a stepwise regression procedure with the rates of inclusion and exclusion of each SNP out of the model at 0.001 level. A total of 54 SNPs were detected; 10, 6, 4, 4, 5, 4, 5, 10, and 6 SNPs for neutrophil, lymphocyte, monocyte, eosinophil, basophil, atypical lymph, immuno-globulin, insulin, and insulin-like growth factor-I, respectively. Each set of significant SNPs per trait explained 24 to 42% of phenotypic variance. Several pleiotropic SNPs were detected on SSCs 4, 13, 14 and 15.

Long-term Follow-up of Cutaneous Hypersensitivity in Rats with a Spinal Cord Contusion

  • Jung, Ji-In;Kim, June-Sun;Hong, Seung-Kil;Yoon, Young-Wook
    • The Korean Journal of Physiology and Pharmacology
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    • 제12권6호
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    • pp.299-306
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    • 2008
  • Sometimes, spinal cord injury (SCI) results in various chronic neuropathic pain syndromes that occur diffusely below the level of the injury. It has been reported that behavioral signs of neuropathic pain are expressed in the animal models of contusive SCI. However, the observation period is relatively short considering the natural course of pain in human SCI patients. Therefore, this study was undertaken to examine the time course of mechanical and cold allodynia in the hindpaw after a spinal cord contusion in rats for a long period of time (30 weeks). The hindpaw withdrawal threshold to mechanical stimulation was applied to the plantar surface of the hindpaw, and the withdrawal frequency to the application of acetone was measured before and after a spinal contusion. The spinal cord contusion was produced by dropping a 10 g weight from a 6.25 and 12.5 mm height using a NYU impactor. After the injury, rats showed a decreased withdrawal threshold to von Frey stimulation, indicating the development of mechanical allodynia which persisted for 30 weeks. The withdrawal threshold between the two experimental groups was similar. The response frequencies to acetone increased after the SCI, but they were developed slowly. Cold allodynia persisted for 30 weeks in 12.5 mm group. The sham animals did not show any significant behavioral changes. These results provide behavioral evidence to indicate that the below-level pain was well developed and maintained in the contusion model for a long time, suggesting a model suitable for pain research, especially in the late stage of SCI or for long term effects of analgesic intervention.

Genome scan linkage analysis identifies a major quantitative trait loci for fatty acid composition in longissimus dorsi muscle in an F2 intercross between Landrace and Korean native pigs

  • Park, Hee-Bok;Han, Sang-Hyun;Yoo, Chae-Kyoung;Lee, Jae-Bong;Kim, Ji-Hyang;Baek, Kwang-Soo;Son, Jun-Kyu;Shin, Sang-Min;Lim, Hyun-Tae;Cho, In-Cheol
    • Asian-Australasian Journal of Animal Sciences
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    • 제30권8호
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    • pp.1061-1065
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    • 2017
  • Objective: This study was conducted to locate quantitative trait loci (QTL) influencing fatty acid (FA) composition in a large $F_2$ intercross between Landrace and Korean native pigs. Methods: Eighteen FA composition traits were measured in more than 960 $F_2$ progeny. All experimental animals were genotyped with 165 microsatellite markers located throughout the pig autosomes. Results: We detected 112 QTLs for the FA composition; Forty seven QTLs reached the genome-wide significant threshold. In particular, we identified a cluster of highly significant QTLs for FA composition on SSC12. QTL for polyunsaturated fatty acid on pig chromosome 12 (F-value = 97.2 under additive and dominance model, nominal p-value $3.6{\times}10^{-39}$) accounted for 16.9% of phenotypic variance. In addition, four more QTLs for C18:1, C18:2, C20:4, and monounsaturated fatty acids on the similar position explained more than 10% of phenotypic variance. Conclusion: Our findings of a major QTL for FA composition presented here could provide helpful information to locate causative variants to improve meat quality traits in pigs.