• Journal of Korean Society on Water Environment
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• v.36 no.4
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• pp.284-299
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• 2020

Dam reservoirs play a particularly crucial role in processing the allochthonous and the autochthonous dissolved (DOC) and the particulate (POC) organic carbon and in the budget of global carbon cycle. However, the complex physical and biogeochemical processes make it difficult to capture the temporal and spatial dynamics of the DOC and the POC in reservoirs. The purpose of this study was to simulate the dynamics of the DOC and the POC in Daecheong Reservoir using the 3-D hydrodynamics and water quality model (AEM3D), and to quantify the mass balance through the source and sink fluxes analysis. The AEM3D model was calibrated using field data collected in 2017 and showed reasonable performance in the water temperature and the water quality simulations. The results showed that the allochthonous and autochthonous proportions of the annual total organic carbon (TOC) loads in the reservoir were 55.5% and 44.5%, respectively. In season, the allochthonous loading was the highest (72.7%) in summer, while in autumn, the autochthonous loading was the majority (77.1%) because of the basal metabolism of the phytoplankton. The amount of the DOC discharged to downstream of the dam was similar to the allochthonous load into the reservoir. However, the POC was removed by approximately 96.6% in the reservoir mainly by the sedimentation. The POC sedimentation flux was 36.21 g-C/㎡/yr. In terms of space, the contribution rate of the autochthonous organic carbon loading was high in order of the riverine zone, the transitional zone, and the lacustrine zone. The results of the study provide important information on the TOC management in the watersheds with extensive stagnant water, such as dam reservoirs and weir pools.

• Journal of Korean Society of Coastal and Ocean Engineers
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• v.27 no.2
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• pp.79-93
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• 2015

Three-dimensional structures of large ocean rings in the Gulf Stream region are investigated using the HYbrid Coordinate Ocean Model (HYCOM). Numerically simulated flow structures around four selected cyclonic and anticyclonic rings are compared with two different horizontal resolutions: $1/12^{\circ}$ and $1/48^{\circ}$. The vertical distributions of Lagrangian Coherent Structures (LCSs) are analyzed using Finite Size Lyapunov Exponent (FSLE) and Okubo-Weiss parameters (OW). Curtain-shaped FSLE ridges are found in all four rings with extensions of surface ridges throughout the water columns, indicating that horizontal stirring is dominant over vertical motions. Near the high-resolution rings, many small-scale flow structures with size O(1~10) km are observed while these features are rarely found near the low-resolution rings. These small-scale structures affect the flow pattern around the rings as flow particles move more randomly in the high-resolution models. The dispersion rates are also affected by these small-scale structures as the relative horizontal dispersion coefficients are larger for the high-resolution models. The absolute vertical dispersion rates are, however, lower for the high-resolution models, because the particles tend to move along inclined eddy orbits when the resolution is low and this increases the magnitude of absolute vertical dispersion. Since relative vertical dispersion can reduce this effect from the orbital trajectories of particles, it gives a more reasonable magnitude range than absolute dispersion, and so is recommended in estimating vertical dispersion rates.

• Journal of the Korean Society of Marine Environment & Safety
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• v.13 no.3
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• pp.173-181
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• 2007

A three-dimensional ecological model (EMT-3D) was applied to Tokyo Bay for the simulation of PFOA. EMT-3D was calibrated with seawater analysis data obtained from the study area in 2004. The simulated results of dissolved PFOA were in good agreement with the observed values, with a correlation coefficient(R) of 0.7115${\sim}$0.8759 and a coefficient of determination $(R^2)$ of 0.5062${\sim}$0.7672. The results of sensitivity analysis showed that partition rate, adsorption rate and settling rate were important factors for PFOA in particulate organic matter. In the case of PFOA in phytoplankton, bioconcentration factor, uptake rate and partition rate were important factors. Therefore, the parameters must be carefully considered in the modeling. In the case of 50% and 80% total loads reduction, concentration of dissolved PFOA was shown to be lower than 20ng/L and 10ng/L, respectively. In the case of reduction of loads from rivers in each prefecture, Tokyo prefecture was found to have the most influence on the change of dissolved PFOA in surface water while Chiba prefecture was found to have the most influnce on the change of dissolved PFOA in bottom water.

• Bulletin of the Korean Chemical Society
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• v.31 no.1
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• pp.52-58
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• 2010

Human histamine H1 receptor (HHR1) is a G protein-coupled receptor and a primary target for antiallergic therapy. Here, the ligand-based three-dimensional pharmacophore models were built from a set of known HHR1 inverse agonists using HypoGen module of CATALYST software. All ten generated pharmacophore models consist of five essential features: hydrogen bond acceptor, ring aromatic, positive ionizable and two hydrophobic functions. Best model had a correlation coefficient of 0.854 for training set compounds and it was validated with an external test set with a high correlation value of 0.925. Using this model Maybridge database containing 60,000 compounds was screened for potential leads. A rigorous screening for drug-like compounds unveiled RH01692 and SPB00834, two novel molecules for HHR1 with good CATALYST fit and estimated activity values. The new lead molecules were docked into the active site of constructed HHR1 homology model based on recently crystallized squid rhodopsin as template. Both the hit compounds were found to have critical interactions with Glu177, Phe432 and other important amino acids. The interpretations of this study may effectively be deployed in designing of novel HHR1 inverse agonists.

• Transactions of the Korean Society of Mechanical Engineers A
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• v.35 no.9
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• pp.1041-1050
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• 2011

An elasto-plastic finite element method using the theory of strain gradient plasticity is proposed to evaluate the size dependency of structural plasticity that occurs when the configuration size decreases to micron scale. For this method, we suggest a low-order plane and three-dimensional displacement-based elements, eliminating the need for a high order, many degrees of freedom, a mixed element, or super elements, which have been considered necessary in previous researches. The proposed method can be performed in the framework of nonlinear incremental analysis in which plastic strains are calculated and averaged at nodes. These strains are then interpolated and differentiated for gradient calculation. We adopted a strain-gradient-hardening constitutive equation from the Taylor dislocation model, which requires the plastic strain gradient. The developed finite elements are tested numerically on the basis of typical size-effect problems such as micro-bending, micro-torsion, and micro-voids. With respect to the strain gradient plasticity, i.e., the size effects, the results obtained by using the proposed method, which are simple in their calculation, are in good agreement with the experimental results cited in previously published papers.

• Journal of the Earthquake Engineering Society of Korea
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• v.16 no.4
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• pp.19-26
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• 2012

For a seismic design or performance evaluation of a structure, an experimental investigation on a scale model of the structure or numerical analysis based on the finite element model is considered. Regarding the numerical analysis, a three-dimensional finite element analysis is performed if a high accuracy of the results is required, while a sensitivity or fragility analysis which uses huge seismic ground motions leads to the use of a lumped-mass stick model. The conventional modeling technique to build the lumped-mass stick model calculates the amount of the lumped mass by considering the geometric shape of the structure, like a tributary area. However, the eigenvalues of the conventional model obtained through such a calculation are normally not the same as those of the actual structure. In order to overcome such a deficiency, in this study, a new lumped mass stick model is proposed. The model is named the "frequency adaptive-lumped-mass stick model." It provides the same eigenvalues and similar dynamic responses as the actual structure. A non-prismatic column is considered as an example, and its natural frequencies as well as the dynamic performance of the new lumped model are compared to those of the full-finite element model. To investigate the damping effect on the new model, 1% to 5% of the critical damping ratio is applied to the model and the corresponding results are also compared to those of the finite element model.

• Journal of the Computational Structural Engineering Institute of Korea
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• v.26 no.1
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• pp.1-7
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• 2013

Structural design and analysis of a coiling arm unloading machine for submarine cable have been originally conducted in this study. Three-dimensional CAD modeling process is practically applied for the structural design in detail. Finite element method(FEM) and multi-body dynamics(MBD) analyses are also used to verify the safety and required motions of the designed coiling arm structure. The effective moving functions of the designed coiling arm with respect to rotational and radial motions are achieved by adopting bearing-roller mechanical parts and hydraulic system. Critical design loading conditions due to its self weight, carrying cables, offshore wind, and hydraulic system over operation conditions are considered for the present structural analyses. In addition, possible inclined ground conditions for the installation of the designed coiling arm are also considered to verify overturn stability. The present hydraulic type coiling arm system is originally designed and developed in this study. The developed coiling arm has been installed at a harbor, successfully tested its operational functions, and finished practical unloading mission of the submarine cable.

• Geophysics and Geophysical Exploration
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• v.18 no.4
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• pp.223-231
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• 2015

Self-potential (SP) is sensitive to groundwater flow and there are many causes to generate SP. Among many mechanisms of SP, pore-fluid flow in porous media can generate potential without any external current source, which is referred to as electrokinetic potential or streaming potential. When calculating SP responses on the surface due to geothermal fluid within an engineered geothermal system (EGS) reservoir, SP anomaly is usually considered to be generated by fluid injection or production within the reservoir. However, SP anomaly can also result from geothermal water fluid within EGS reservoirs experiencing temperature changes between injection and production wells. For more precise simulation of SP responses, we developed an algorithm being able to take account of SP anomalies produced by not only water injection and production but also the fluid of geothermal water, based on three-dimensional finite-element-method employing tetrahedron elements; the developed algorithm can simulate electrical potential responses by both point source and volume source. After verifying the developed algorithm, we assumed a simple geothermal reservoir model and analyzed SP responses caused by geothermal water injection and production. We are going to further analyze SP responses for geothermal water in the presence of water production and injection, considering temperature distribution and geothermal water flow in the following research.

• The Journal of Engineering Geology
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• v.24 no.1
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• pp.53-67
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• 2014

Numerical modeling is commonly used to reproduce the physical phenomena of dam-break and to compile resulting flood hazard maps. The accuracy of a dam-break model depends on the physical structure that describes the volume of storage, breach formation and progress, input variables, and model parameters. Model input and parameters are subjective in that they are prescribed; hence, caution is needed when interpreting the results. This study focuses on three parameters (breach degree ${\theta}$, shape factor P, and collapse rate k) used when the dam-break model is coupled with FLO-2D (a two-dimensional flood simulation model) to estimate flood coverage and depth etc. The results show that the simulation is sensitive to the shape factor P and the collapse rate k but not to the breach degree ${\theta}$. This study will contribute to reducing flood damage from dam-break disasters in the future.

• Journal of Biomedical Engineering Research
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• v.24 no.6 s.81
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• pp.515-522
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• 2003

Pharynx is a system transporting foods by peristaltic motion(contraction and expansion movement! into the esophagus and functioning as airway passages. In this study, structural changes of pharyngeal dysfunction are analyzed by biomechanical model using CT and FEM(finite clement method). Loading condition was assumed that equal pressure was loaded sequentially to inside of pharyngeal tissue. In order to analyze the pharyngeal muscular dysfunction by biomechanical model. the pharyngeal dysfunctions was classified into 3 cases. Taking into account the clinical complication by neuromuscular symptoms such as pharyngeal dysfunction after stroke. we assumed that a change of material property is caused by muscular tissue stiffness. A deformation of cross sectional area of the pharynx is analyzed increasing the stiffness $25\%,\;50\%,\;75\%$ in each case on the basis of stress-strain relationship. Based on three-dimensional reconstruction of pharyngeal structure using limited factor - techniques and the optimization procedure by means of inverse dynamic approach. the biomechanical model of the human pharynx is implemented. The results may be used as clinical index illustrating the degree of pharyngeal muscular dysfunction. This study may be used as useful diagnostic model in discovering early deglutitory impediment caused by physiological or pathological pharyngeal dysfunction.