• Proceedings of the Microbiological Society of Korea Conference
• /
• 2002.10a
• /
• pp.27-30
• /
• 2002

Ralstonia eutrupha JMP134 is a well-known soil bacterium which can metabolite diverse aromatic compounds and xenobiotics, such as phenol, 2,4-dichlorophenoxy acetic acid (2, 4-D), and trichloroethylene (TCE), etc. Phenol is degraded through chromosomally encoded phenol degradation pathway. Phenol is first metabolized into catechol by a multicomponent phenol hydroxylase, which is further metabolized to TCA cycle intermediates via a meta-cleavage pathway. The nucleotide sequences of the genes for the phenol hydroxylase have previously been determined, and found to composed of eight genes phlKLMNOPRX in an operon structure. The phlR, whose gene product is a NtrC-like transcriptional activator, was found to be located at the internal region of the structural genes, which is not the case in most bacteria where the regulatory genes lie near the structural genes. In addition to this regulatory gene, we found other regulatory genes, the phlA and phlR2, downstream of the phlX. These genes were found to be overlapped and hence likely to be co-transcribed. The protein similarity analysis has revealed that the PhlA belongs to the GntR family, which are known to be negative regulators, whereas the PhlR2 shares high homology with the NtrC-type family of transcriptional activators like the PhlR. Disruption of the phlA by insertional mutation has led to the constitutive expression of the activity of phenol hydroxylase in JMP134, indicating that PhlA is a negative regulator. Possible regulatory mechanisms of phenol metabolism in R. eutropha JMP134 has been discussed.

• Journal of Microbiology
• /
• v.44 no.4
• /
• pp.432-438
• /
• 2006

Twelve actinomycete strains were isolated from Egyptian soil. The isolated actinomycete strains were then screened with regard to their potential to generate antibiotics. The most potent of the producer strains was selected and identified. The cultural and physiological characteristics of the strain identified. the strain as a member of the genus Streptomyces. The nucleotide sequence of the 16S rRNA gene (1.5kb) of the most potent strain evidenced a 99% similarity with Streptomyces spp. and S. aureofaciens 16S rRNA genes, and the isolated strain was ultimately identified as Streptomyces sp. MAR01. The extraction of the fermentation broth of this strain resulted in the isolation of one major compound, which was active in vitro against gram-positive, gram-negative representatives and Candida albicans. The chemical structure of this bioactive compound was elucidated based on the spectroscopic data obtained from the application of MS, IR, UV, $^1H$ NMR, $^{13}C$ NMR, and elemental analysis techniques. Via comparison to the reference data in the relevant literature and in the database search, this antibiotic, which had a molecular formula of $C_{19}H_{29}NO_2$ and a molecular weight of 303.44, was determined to differ from those produced by this genus as well as the available known antibiotics. Therefore, this antibiotic was designated Meroparamycin.

• Journal of Biomedical Engineering Research
• /
• v.26 no.3
• /
• pp.129-132
• /
• 2005

It is one of the most important issues to determine a target brain image that gives a common coordinate system for a constructing population-based brain atlas. The purpose of this study is to provide a simple and reliable procedure that determines the target brain image among the group based on the inherent structural information of three-dimensional magnetic resonance (MR) images. It uses only 11 lines defined automatically as a feature vector representing structural variations based on the Talairach coordinate system. Average characteristic vector of the group and the difference vectors of each one from the average vector were obtained. Finally, the individual data that had the minimum difference vector was determined as the target. We determined the target brain image by both our algorithm and conventional visual inspection for 20 healthy young volunteers. Eighteen fiducial points were marked independently for each data to evaluate the similarity. Target brain image obtained by our algorithm showed the best result, and the visual inspection determined the second one. We concluded that our method could be used to determine an appropriate target brain image in constructing brain atlases such as disease-specific ones.

• Journal of The Korean Astronomical Society
• /
• v.39 no.3
• /
• pp.57-71
• /
• 2006

We investigated the structural parameters of a sample of 30 dwarf galaxies(15 dEs and 15 dS0s) in the Virgo Cluster using i-band images from the Sloan Digital Sky Survey Data Release 4. Among 28 galaxies for which surface brightness profiles were derived from ellipse fittings, 23 galaxies had a single component that was adequately described by a generalized $S\acute{e}rsic$ function with a shape parameter ranging from n=0.5 to 2, while 5 galaxies(2 dEs and 3 dS0s) had bulge and disk components that were fitted by a generalized $S\acute{e}rsic$ function and an exponential function, respectively. Since the majority of dwarf galaxies in the present sample had a single component, it seems likely that genuine dS0 galaxies that have disk and bulge components are quite rare in the Virgo Cluster. The similarity in structural parameters of genuine dS0 galaxies in the Virgo Cluster with those of Magellanic-type galaxies implies that the progenitors of dwarf lenticular galaxies in the Virgo Cluster were most likely Magellanic-type galaxies if dS0s are harassed late-type spirals.

• Journal of the Korean Institute of Electrical and Electronic Material Engineers
• /
• v.19 no.8
• /
• pp.701-706
• /
• 2006

In addition to its similarity to genuine diamond film, diamond-like carbon (DLC) film has many advantages, including its wide band gap and variable refractive index. In this study, DLC films were prepared by the RF PECVD (Plasma Enhanced Chemical Vapor Deposition) method on silicon substrates using methane $(CH_4)$ and hydrogen $(H_2)$ gas. We examined the effects of the post annealing temperature on the structural variation of the DLC films. The films were annealed at temperatures ranging from 300 to $900^{\circ}C$ in steps of $200^{\circ}C$ using RTA equipment in nitrogen ambient. The thickness of the film and interface between film and substrate were observed by surface profiler, field emission scanning electron microscopy (FESEM), high resolution transmission electron microscopy (HRTEM), respectively. Raman and X-ray photoelectron spectroscopy (XPS) analysis showed that DLC films were graphitized ($I_D/I_G$, G-peak position and $sp^2/sp^3$ increased) ratio at higher annealing temperature. The variation of surface as a function of annealing treatment was verified by a AFM and contact angle method.

• Wind and Structures
• /
• v.25 no.3
• /
• pp.301-328
• /
• 2017

Multivariate fluctuating pressures acting on a 2:1 rectangular section (2-D) with dimensions of 9 cm by 4.5 cm has been studied using wind tunnel experiments under uniform and smooth flow condition for various angles of wind incidence. Based on the variation of mean pressure coefficient distributions along the circumference of the rectangular section with angle of wind incidence, and with the aid of skin friction coefficients, three distinct flow regimes with two transition regimes have been identified. Further, variations of mean drag and lift coefficients, Strouhal number with angles of wind incidence have been studied. The applicability of Universal Strouhal number based on vortex street similarity of wakes in bluff bodies to the 2:1 rectangular section has been studied for different angles of wind incidence. The spatio-temporal correlation features of the measured pressure data have been studied using Proper Orthogonal Decomposition (POD) technique. The contribution of individual POD modes to the aerodynamic force components, viz, drag and lift, have been studied. It has been demonstrated that individual POD modes can be associated to different physical phenomena, which contribute to the overall aerodynamic forces.

• Proceedings of the KSME Conference
• /
• 2001.06b
• /
• pp.404-409
• /
• 2001

Seismic qualification of the Air Cleaning Units for nuclear power plant Ulchin 5&6 has been performed with the guideline of ASME Section III and IEEE 344 code. By using the structural and geometrical similarity analysis, the three models to be analyzed is condensed into a single model and, at the same time, the excitation forces and other operating loads for each model are encompassed with respect to different loading conditions. As the fundamental frequencies of the structure are found to be less than 33Hz, which is the upper frequency limit of the seismic load, response spectrum analysis using ANSYS is performed in order to combine the modal stresses within the frequency limit. In order to confirm the structural and electric stability of the major components, modal analysis theory is adopted to derive the required response spectrum at the component locations. As the all combined stresses obtained from the above procedures are less than allowable stresses and no mechanical or electrical failures are found from the seismic testing, the authors confirm the safety of the nuclear equipments Air Cleaning Units studied in this paper.

• Journal of Integrative Natural Science
• /
• v.9 no.3
• /
• pp.190-198
• /
• 2016

Xanthine Oxidase is an enzyme, which oxidizes hypoxanthine to xanthine, and xanthine to uric acid. It is widely distributed throughout various organsincluding the liver, gut, lung, kidney, heart, brain and plasma. It is involved in gout pathogenesis. In this study, we have performed Comparative Molecular Field Analysis (CoMSIA) on a series of 2-(indol-5-yl) thiazole derivatives as xanthine oxidase (XO) inhibitors to identify the structural variations with their inhibitory activities. Ligand based CoMSIA models were generated based on atom-by-atom matching alignment. In atom-by-atom matching, the bioactive conformation of highly active molecule 11 was generated using systematic search. Compounds were aligned using the bioactive conformation and it is used for model generation. Different CoMSIA models were generated using different alignments and the best model yielded across-validated $q^2$ of 0.698 with five components and non-cross-validated correlation coefficient ($r^2$) of 0.992 with Fisher value as 236.431, and an estimated standard error of 0.068. The predictive ability of the best CoMSIA models was found to be $r{^2}_{pred}$ 0.653. The study revealed the important structural features required for the biological activity of the inhibitors and could provide useful for the designing of novel and potent drugs for the inhibition of Xanthine oxidase.

• Bulletin of the Korean Chemical Society
• /
• v.30 no.11
• /
• pp.2749-2753
• /
• 2009

Structural characteristics that influence on the insecticidal activity ($pI_{50}$) of 2-(n-octyl)isothiourea analogues (1-45) against the diamondback moth (Plutella xylostella, L.) based on three dimensional quantitative structure activity relationships (3D-QSARs) were discussed quantitatively using a comparative molecular field analysis (CoMFA) and a comparative molecular similarity indeces analysis (CoMSIA) methods. The statistical values of the CoMFA 2 model were better than those of the CoMSIA 1 model. The CoMFA 2 model was the optimized model with the correlativity (the training set: Ave. = 0.104 & PRESS = 0.613) and the predictability (the test set: Ave. = 0.086 & PRESS = 0.096). Insecticidal activities with the optimized CoMFA 2 model were dependent upon steric factors (79.4%) of $R_1-R_3$ substituents. From the analytical results of CoMFA contour maps, it is predicted that the R1 substituent of 1-45 which has a steric favor in a broad space, $R_2\;and\;R_3$ groups with a steric favor in a narrow space and a H-bond donor favor would have better the insecticidal activity.

• Journal of the Computational Structural Engineering Institute of Korea
• /
• v.27 no.4
• /
• pp.273-279
• /
• 2014

In this paper, wind tunnel tests of a scaled wind turbine have been performed to investigate the effects of turbulent intensity of oncoming flow on turbine wake field. The scaled turbine model was carefully designed to satisfy the similarity conditions. The wind velocities and turbulent intensities were measured using hotwire anemometer in order to compare with existing wake model. It was found from the tests that the existing wake models well fit with test results at turbulent flow rather than at uniform flow. Finally modified wake model has been proposed based on the measured data.