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Mathematical Models to Describe the Kinetic Behavior of Staphylococcus aureus in Jerky

  • Ha, Jimyeong;Lee, Jeeyeon;Lee, Soomin;Kim, Sejeong;Choi, Yukyung;Oh, Hyemin;Kim, Yujin;Lee, Yewon;Seo, Yeongeun;Yoon, Yohan
    • Food Science of Animal Resources
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    • v.39 no.3
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    • pp.371-378
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    • 2019
  • The objective of this study was to develop mathematical models for describing the kinetic behavior of Staphylococcus aureus (S. aureus) in seasoned beef jerky. Seasoned beef jerky was cut into 10-g pieces. Next, 0.1 mL of S. aureus ATCC13565 was inoculated into the samples to obtain 3 Log CFU/g, and the samples were stored aerobically at $10^{\circ}C$, $20^{\circ}C$, $25^{\circ}C$, $30^{\circ}C$, and $35^{\circ}C$ for 600 h. S. aureus cell counts were enumerated on Baird Parker agar during storage. To develop a primary model, the Weibull model was fitted to the cell count data to calculate Delta (required time for the first decimal reduction) and ${\rho}$ (shape of curves). For secondary modeling, a polynomial model was fitted to the Delta values as a function of storage temperature. To evaluate the accuracy of the model prediction, the root mean square error (RMSE) was calculated by comparing the predicted data with the observed data. The surviving S. aureus cell counts were decreased at all storage temperatures. The Delta values were longer at $10^{\circ}C$, $20^{\circ}C$, and $25^{\circ}C$ than at $30^{\circ}C$ and $35^{\circ}C$. The secondary model well-described the temperature effect on Delta with an $R^2$ value of 0.920. In validation analysis, RMSE values of 0.325 suggested that the model performance was appropriate. S. aureus in beef jerky survives for a long period at low storage temperatures and that the model developed in this study is useful for describing the kinetic behavior of S. aureus in seasoned beef jerky.

Calibration of cultivar parameters for cv. Shindongjin for a rice growth model using the observation data in a low quality (저품질 관측자료를 사용한 벼 생육 모델의 신동진 품종모수 추정)

  • Hyun, Shinwoo;Kim, Kwang Soo
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.21 no.1
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    • pp.42-54
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    • 2019
  • Crop models depend on a large number of input parameters including the cultivar parameters that represent the genetic characteristics of a given cultivar. The cultivar parameters have been estimated using high quality data for crop growth, which require considerable costs and efforts. The objective of this study was to examine the feasibility of using low quality data for the parameter estimation. In the present study, the cultivar parameters for cv. Shindongjin were estimated using the data obtained from the report of new cultivars development and research from 2005 to 2016. The root mean square errors (RMSE) of the heading dates were less than 3 days when the parameters associated with phenology were estimated. In contrast, the coefficient of determination for yield tended to be less than 0.1. The large errors incurred by the fact that no growth data collected over a season was used for parameter estimation. This suggests that detailed observation data needs to be prepared for parameter calibration, which would be aided by remote sensing approaches. The occurrence of natural disasters during a growing season has to be considered because crop models cannot take into account the effects of those events. Still, our results provide a reasonable range for the parameters, which could be used to set the boundary of a given parameter for cultivars similar to cv. Shindongjin in further studies.

Correlation between Surface Electromyography and Conventional Electromyography in Facial Nerve Palsy (안면마비 환자에서 표면 근전도 검사와 통상적 근전도 검사간 상관관계)

  • Jang, Haneul;Yoo, Seung Don;Lee, Jong Ha;Soh, Yunsoo;Kim, Dong Hwan;Chon, Jinmann;Lee, Seung Ah;Kim, Hee-Sang;Yun, Dong Hwan;Kwon, Jung Ho
    • Journal of Electrodiagnosis and Neuromuscular Diseases
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    • v.20 no.2
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    • pp.84-90
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    • 2018
  • Objective: To assess the correlation between surface electromyography (SEMG) and conventional EMG in patients with facial nerve palsy. Additionally, compare the discomfort and the time required by the patients in two methods. Method: 36 patients with facial palsy were given nerve conduction studies (NCS) via conventional EMG. Then, the peak root mean square (RMS) values were obtained from the SEMG. We also recorded visual analogue scale (VAS), House-Brackmann scale, and the time required for the examination. Results: Pearson's correlation coefficient between the amplitude loss ratio of the RMS values obtained by SEMG compared to the unaffected side (RSEMG) and the amplitude loss ratio of CMAP amplitudes compared to the unaffected side (RCMAP) was 0.567 at the frontalis, 0.456 at the orbicularis oculi, 0.393 at the nasalis, and 0.437 at the orbicularis oris. An increase in RSEMG is positively correlated with an increase in RCMAP. The mean VAS score with conventional EMG was $3.55{\pm}1.42$, whereas that experienced when using SEMG was $0.11{\pm}0.52$ and the mean time required for conventional EMG was $610{\pm}103.84$ seconds, while that required for SEMG was $420{\pm}86.32$ seconds. Conclusion: This study demonstrated a significant positive correlation between facial muscle activities as measured by SEMG and conventional EMG in patients with facial nerve palsy. SEMG has the benefits of being more comfortable and faster when diagnosing facial palsy.

Phenophase Extraction from Repeat Digital Photography in the Northern Temperate Type Deciduous Broadleaf Forest (온대북부형 낙엽활엽수림의 디지털 카메라 반복 이미지를 활용한 식물계절 분석)

  • Han, Sang Hak;Yun, Chung Weon;Lee, Sanghun
    • Journal of Korean Society of Forest Science
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    • v.109 no.4
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    • pp.361-370
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    • 2020
  • Long-term observation of the life cycle of plants allows the identification of critical signals of the effects of climate change on plants. Indeed, plant phenology is the simplest approach to detect climate change. Observation of seasonal changes in plants using digital repeat imaging helps in overcoming the limitations of both traditional methods and satellite remote sensing. In this study, we demonstrate the utility of camera-based repeat digital imaging in this context. We observed the biological events of plants and quantified their phenophases in the northern temperate type deciduous broadleaf forest of Jeombong Mountain. This study aimed to identify trends in seasonal characteristics of Quercus mongolica (deciduous broadleaf forest) and Pinus densiflora (evergreen coniferous forest). The vegetation index, green chromatic coordinate (GCC), was calculated from the RGB channel image data. The magnitude of the GCC amplitude was smaller in the evergreen coniferous forest than in the deciduous forest. The slope of the GCC (increased in spring and decreased in autumn) was moderate in the evergreen coniferous forest compared with that in the deciduous forest. In the pine forest, the beginning of growth occurred earlier than that in the red oak forest, whereas the end of growth was later. Verification of the accuracy of the phenophases showed high accuracy with root-mean-square error (RMSE) values of 0.008 (region of interest [ROI]1) and 0.006 (ROI3). These results reflect the tendency of the GCC trajectory in a northern temperate type deciduous broadleaf forest. Based on the results, we propose that repeat imaging using digital cameras will be useful for the observation of phenophases.

Parameter optimization of agricultural reservoir long-term runoff model based on historical data (실측자료기반 농업용 저수지 장기유출모형 매개변수 최적화)

  • Hong, Junhyuk;Choi, Youngje;Yi, Jaeeung
    • Journal of Korea Water Resources Association
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    • v.54 no.2
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    • pp.93-104
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    • 2021
  • Due to climate change the sustainable water resources management of agricultural reservoirs, the largest number of reservoirs in Korea, has become important. However, the DIROM, rainfall-runoff model for calculating agricultural reservoir inflow, has used regression equation developed in the 1980s. This study has optimized the parameters of the DIROM using the genetic algorithm (GA) based on historical inflow data for some agricultural reservoirs that recently begun to observe inflow data. The result showed that the error between the historical inflow and simulated inflow using the optimal parameters was decreased by about 80% compared with the annual inflow with the existing parameters. The correlation coefficient and root mean square error with the historical inflow increased to 0.64 and decreased to 28.2 × 103 ㎥, respectively. As a result, if the DIROM uses the optimal parameters based on the historical inflow of agricultural reservoirs, it will be possible to calculate the long-term reservoir inflow with high accuracy. This study will contribute to future research using the historical inflow of agricultural reservoirs and improvement of the rainfall-runoff model parameters. Furthermore, the reliable long-term inflow data will support for sustainable reservoir management and agricultural water supply.

Accuracy Analysis for Slope Movement Characterization by comparing the Data from Real-time Measurement Device and 3D Model Value with Drone based Photogrammetry (도로비탈면 상시계측 실측치와 드론 사진측량에 의한 3D 모델값의 정확도 비교분석)

  • CHO, Han-Kwang;CHANG, Ki-Tae;HONG, Seong-Jin;HONG, Goo-Pyo;KIM, Sang-Hwan;KWON, Se-Ho
    • Journal of the Korean Association of Geographic Information Studies
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    • v.23 no.4
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    • pp.234-252
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    • 2020
  • This paper is to verify the effectiveness of 'Hybrid Disaster Management Strategy' that integrates 'RTM(Real-time Monitoring) based On-line' and 'UAV based Off-line' system. For landslide prone area where sensors were installed, the conventional way of risk management so far has entirely relied on RTM data collected from the field through the instrumentation devices. But it's not enough due to the limitation of'Pin-point sensor'which tend to provide with only the localized information where sensors have stayed fixed. It lacks, therefore, the whole picture to be grasped. In this paper, utilizing 'Digital Photogrammetry Software Pix4D', the possibility of inference for the deformation of ungauged area has been reviewed. For this purpose, actual measurement data from RTM were compared with the estimated value from 3D point cloud outcome by UAV, and the consequent results has shown very accurate in terms of RMSE.

Quantitative analysis of glycerol concentration in red wine using Fourier transform infrared spectroscopy and chemometrics analysis

  • Joshi, Rahul;Joshi, Ritu;Amanah, Hanim Zuhrotul;Faqeerzada, Mohammad Akbar;Jayapal, Praveen Kumar;Kim, Geonwoo;Baek, Insuck;Park, Eun-Sung;Masithoh, Rudiati Evi;Cho, Byoung-Kwan
    • Korean Journal of Agricultural Science
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    • v.48 no.2
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    • pp.299-310
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    • 2021
  • Glycerol is a non-volatile compound with no aromatic properties that contributes significantly to the quality of wine by providing sweetness and richness of taste. In addition, it is also the third most significant byproduct of alcoholic fermentation in terms of quantity after ethanol and carbon dioxide. In this study, Fourier transform infrared (FT-IR) spectroscopy was employed as a fast non-destructive method in conjugation with multivariate regression analysis to build a model for the quantitative analysis of glycerol concentration in wine samples. The samples were prepared by using three varieties of red wine samples (i.e., Shiraz, Merlot, and Barbaresco) that were adulterated with glycerol in concentration ranges from 0.1 to 15% (v·v-1), and subjected to analysis together with pure wine samples. A net analyte signal (NAS)-based methodology, called hybrid linear analysis in the literature (HLA/GO), was applied for predicting glycerol concentrations in the collected FT-IR spectral data. Calibration and validation sets were designed to evaluate the performance of the multivariate method. The obtained results exhibited a high coefficient of determination (R2) of 0.987 and a low root mean square error (RMSE) of 0.563% for the calibration set, and a R2 of 0.984 and a RMSE of 0.626% for the validation set. Further, the model was validated in terms of sensitivity, selectivity, and limits of detection and quantification, and the results confirmed that this model can be used in most applications, as well as for quality assurance.

Boosting the Performance of Python-based Geodynamic Code using the Just-In-Time Compiler (Just-In-Time 컴파일러를 이용한 파이썬 기반 지구동역학 코드 가속화 연구)

  • Park, Sangjin;An, Soojung;So, Byung-Dal
    • Geophysics and Geophysical Exploration
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    • v.24 no.2
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    • pp.35-44
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    • 2021
  • As the execution speed of Python is slower than those of other programming languages (e.g., C, C++, and FORTRAN), Python is not considered to be efficient for writing numerical geodynamic code that requires numerous iterations. Recently, many computational techniques, such as the Just-In-Time (JIT) compiler, have been developed to enhance the calculation speed of Python. Here, we developed two-dimensional (2D) numerical geodynamic code that was optimized for the JIT compiler, based on Python. Our code simulates mantle convection by combining the Particle-In-Cell (PIC) scheme and the finite element method (FEM), which are both commonly used in geodynamic modeling. We benchmarked well-known mantle convection problems to evaluate the reliability of our code, which confirmed that the root mean square velocity and Nusselt number obtained from our numerical modeling were consistent with those of the mantle convection problems. The matrix assembly and PIC processes in our code, when run with the JIT compiler, successfully achieved a speed-up 30× and 258× faster than without the JIT compiler, respectively. Our Python-based FEM-PIC code shows the high potential of Python for geodynamic modeling cases that require complex computations.

Intermetallic Compound Growth Characteristics of Cu/thin Sn/Cu Bump for 3-D Stacked IC Package (3차원 적층 패키지를 위한 Cu/thin Sn/Cu 범프구조의 금속간화합물 성장거동분석)

  • Jeong, Myeong-Hyeok;Kim, Jae-Won;Kwak, Byung-Hyun;Kim, Byoung-Joon;Lee, Kiwook;Kim, Jaedong;Joo, Young-Chang;Park, Young-Bae
    • Korean Journal of Metals and Materials
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    • v.49 no.2
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    • pp.180-186
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    • 2011
  • Isothermal annealing and electromigration tests were performed at $125^{\circ}C$ and $125^{\circ}C$, $3.6{\times}10_4A/cm^2$ conditions, respectively, in order to compare the growth kinetics of the intermetallic compound (IMC) in the Cu/thin Sn/Cu bump. $Cu_6Sn_5$ and $Cu_3Sn$ formed at the Cu/thin Sn/Cu interfaces where most of the Sn phase transformed into the $Cu_6Sn_5$ phase. Only a few regions of Sn were not consumed and trapped between the transformed regions. The limited supply of Sn atoms and the continued proliferation of Cu atoms enhanced the formation of the $Cu_3Sn$ phase at the Cu pillar/$Cu_6Sn_5$ interface. The IMC thickness increased linearly with the square root of annealing time, and increased linearly with the current stressing time, which means that the current stressing accelerated the interfacial reaction. Abrupt changes in the IMC growth velocities at a specific testing time were closely related to the phase transition from $Cu_6Sn_5$ to $Cu_3Sn$ phases after complete consumption of the remaining Sn phase due to the limited amount of the Sn phase in the Cu/thin Sn/Cu bump, which implies that the relative thickness ratios of Cu and Sn significantly affect Cu-Sn IMC growth kinetics.

Integrated calibration weighting using complex auxiliary information (통합 칼리브레이션 가중치 산출 비교연구)

  • Park, Inho;Kim, Sujin
    • The Korean Journal of Applied Statistics
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    • v.34 no.3
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    • pp.427-438
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    • 2021
  • Two-stage sampling allows us to estimate population characteristics by both unit and cluster level together. Given a complex auxiliary information, integrated calibration weighting would better reflect the level-wise characteristics as well as multivariate characteristics between levels. This paper explored the integrated calibration weighting methods by Estevao and Särndal (2006) and Kim (2019) through a simulation study, where the efficiency of those weighting methods was compared using an artificial population data. Two weighting methods among others are shown efficient: single step calibration at the unit level with stacked individualized auxiliary information and iterative integrated calibration at each level. Under both methods, cluster calibrated weights are defined as the average of the calibrated weights of the unit(s) within cluster. Both were very good in terms of the goodness-of-fit of estimating the population totals of mutual auxiliary information between clusters and units, and showed small relative bias and relative mean square root errors for estimating the population totals of survey variables that are not included in calibration adjustments.