• Title/Summary/Keyword: Spectrum Database

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Highly Expressed Integrin-α8 Induces Epithelial to Mesenchymal Transition-Like Features in Multiple Myeloma with Early Relapse

  • Ryu, Jiyeon;Koh, Youngil;Park, Hyejoo;Kim, Dae Yoon;Kim, Dong Chan;Byun, Ja Min;Lee, Hyun Jung;Yoon, Sung-Soo
    • Molecules and Cells
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    • v.39 no.12
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    • pp.898-908
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    • 2016
  • Despite recent groundbreaking advances in multiple myeloma (MM) treatment, most MM patients ultimately experience relapse, and the relapse biology is not entirely understood. To define altered gene expression in MM relapse, gene expression profiles were examined and compared among 16 MM patients grouped by 12 months progression-free survival (PFS) after autologous stem cell transplantation. To maximize the difference between prognostic groups, patients at each end of the PFS spectrum (the four with the shortest PFS and four with the longest PFS) were chosen for additional analyses. We discovered that integrin-${\alpha}8$ (ITGA8) is highly expressed in MM patients with early relapse. The integrin family is well known to be involved in MM progression; however, the role of integrin-${\alpha}8$ is largely unknown. We functionally overexpressed integrin-${\alpha}8$ in MM cell lines, and surprisingly, stemness features including $HIF1{\alpha}$, VEGF, OCT4, and Nanog, as well as epithelial mesenchymal transition (EMT)-related phenotypes, including N-cadherin, Slug, Snail and CXCR4, were induced. These, consequently, enhanced migration and invasion abilities, which are crucial to MM pathogenesis. Moreover, the gain of integrin-${\alpha}8$ expression mediated drug resistance against melphalan and bortezomib, which are the main therapeutic agents in MM. The cBioPortal genomic database revealed that ITGA8 have significant tendency to co-occur with PDGFRA and PDGFRB and their mRNA expression were up-regulated in ITGA8 overexpressed MM cells. In summary, integrin-${\alpha}8$, which was up-regulated in MM of early relapse, mediates EMT-like phenotype, enhancing migration and invasion; therefore, it could serve as a potential marker of MM relapse and be a new therapeutic target.

A Study of Traffic Noise Characteristics on the National Highways (일반국도의 교통소음특성에 관한 연구)

  • Son, Hyeon Jang;An, Deok-Soon;Baek, Cheolmin;Kwon, Soo-Ahn;Lee, Jaejun
    • International Journal of Highway Engineering
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    • v.15 no.2
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    • pp.11-18
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    • 2013
  • PURPOSES : This study presents the noise level and frequency characteristics investigated in the national highways with the consideration of various measuring conditions and/or methods. METHODS : The noise levels on the asphalt concrete pavement(ACP) and the jointed plain concrete pavement(JPCP) of the national highway were measured and analysed with respect to three variables, i.e., pavement type, surface condition, and measurement distance. The PASS-By method is utilized for the noise measurement and then using CPB spectrum analysis method with 1/3 octave bandwidth, the noise levels and frequency characteristics were calculated for two-second periods before and after the peak noise. RESULTS : Depending on the pavement type, the noise level was changed as the average noise levels are 73.3dB(A) and 78.3dB(A) for ACP and JPCP, respectively. With respect to the effect of surface condition, the average noise levels for crack H(high), M(medium), and L (low) sections are 77.4dB(A), 77.4dB(A), and 78.1dB(A), respectively. Regarding the measurement distance, 1.2meter difference in measuring location reduces 1.6dB(A) of noise level; the average noise levels at 5.3m and 7.5m from the centerline of outer lane are 72.8dB(A) and 71.2dB(A), respectively. It should be noted that the noise levels are slightly different as a function of vehicle speed and type. However, the overall trends for each case was similar. It was found that the domain frequency bands for ACP and JPCP were 400Hz~2000Hz and 500Hz~2000Hz, respectively. CONCLUSIONS : Based on the analysis with the measured noise date from national highway, it was concluded that the noise level and frequency band vary depending on the various conditions. It was also found that some variables significantly affect the noise level while others do not. With further systematic investigation, the comprehensive noise characteristics on the national highway can be achieved. Using such database, it is possible to develop the fundamental noise reduction technology.

Analysis of the composition of trail pheromone secreted from live Camponotus japonicus by HS-SPME GC/MS (HeadSpace-Solid Phase MicroExtraction Gas Chromatography/Mass Spectrometry) (HS-SPME GC/MS법을 이용한 일본왕개미의 trail pheromone 성분 분석)

  • Park, Kyung-Eun;Lee, Dong-Kyu;Kwon, Sung Won;Lee, Mi-Young
    • Analytical Science and Technology
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    • v.25 no.5
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    • pp.292-299
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    • 2012
  • GC/MS has been utilized for many applications due to great resolution and reproducibility, which made it possible to build up the database of mass spectrum, while HS-SPME has the advantage of solventfree extraction of volatile compounds. The combination of these two methods, HS-SPME GC/MS, enabled many scientific applications with various possibilities. In this study, the analysis of trail pheromone excreted from live Camponotus japonicus with the feature of solvent-free extraction was carried out and the optimization for this analysis was performed. The major compounds detected were n-decane, n-undecane, and n-tridecane. Optimization for the best detection of these hydrocarbons was processed in the point of SPME parameter (selection of fiber, extraction temperature, extraction time, etc.). The advantage of the analysis of live sample is to analyze phenomenon right after it is excreted by ants. But the experimental process has restriction of extraction temperature and time because of the analysis of live ants. Establishing the process of HS-SPME GC/MS applied to live samples shown in this study can be a breakthrough for the ecofriendly and ethical research of live things.

A Study on the Classifying Quality Standard by Comparison with Physicochemical Characteristics of Virgin, Pure, Pomace Olive Oil (버진, 퓨어, 포마스 올리브유의 이화학적인 특성 비교를 통한 품질등급 구분에 관한 연구)

  • Cho, Eun-Ah;Lee, Young-Sang
    • The Korean Journal of Food And Nutrition
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    • v.27 no.3
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    • pp.339-347
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    • 2014
  • This study investigated the classification of olive oils that are mainly distributed in Korea via imports. The fatty acid contents, degree of color, pigments, anti-oxidants, and sterol contents are analyzed on the different types of olive oil as follows: 10 kinds of extra virgin olive oil, 5 kinds of pure olive oil, and 5 kinds of refined olive-pomace oil. As a result of fatty acid analysis, the majority of oleic acid ($C_{18:1}$) and palmitic acid ($C_{16:0}$), and minority of linoleic acid ($C_{18:2}$) and stearic acid ($C_{18:0}$) were detected without any significant differences between the grades of olive oils. The UV spectrum is related to the ${\Delta}K$, and it is a part of the analysis factor for the purity and degree of degradation of the oil. Extra virgin olive oil had ${\Delta}K$ of almost 0, pure olive oil had 0.07~0.12, and refined olive-pomace oil had 0.1~0.13. These differed from extra virgin oil, and the pure or pomace oil ${\Delta}K$ had a confirmed distinct difference. The color degrees of chlorophyll with a low $L^*$ value and $(-)a^*$ (green) and carotenoid with $(+)b^*$ (yellow) were confirmed to have correlation between extra virgin and other olive oils. To compare chlorophyll and carotenoid as natural pigment in olive oils, 417 nm and the ratio of the absorbance at 480 nm (417/480) was calculated at 1.62 of extra virgin, 1.85 of pure olive oil, and 3.32 of refined olive-pomace oil. Therefore, it will be possible to distinguish when the extra virgin or pure olive oil are mixed with olive-pomace oil. The total amount of tocopherol, an anti-oxidant, were 19.06 in extra virgin, 10.91 in pure olive oil, and 27.88 in refined olive-pomace oil. The high content of tocopherol in pomace oil caused recovery of solvent extraction from olive pulp. Thus, extra virgin oil and pure olive oil were distinguished by olive-pomace oil. Polyphenol compounds in extra virgin olive oil measured high only in ferulic acid with 0.543 mg/kg, caffeic acid with 0.393 mg/kg, and other vanillic acid, vanillin, and p-coumaric acid had similar amount of 0.3 mg/kg. All grade of olive oils had the highest ${\beta}$-sitosterol content. Af (Authenticity factor) value were estimated with campesterol and stigmasterol content ratio (%). Af value was 19.2 in extra virgin olive oil, 17.1 in pure olive oil, 16.9 in refined olive-pomace oil, which were distinctive from sunflower oil with 3.7, corn oil with 2.4, and soybean oil with 2.0. It can provide important indicator of olive oil adulteration with other cheap vegetable oils. The results of this study can be used as a database for the classification of olive oil grade and distinguishing between the different types of oils.

Selectivity Estimation for Spatio-Temporal a Overlap Join (시공간 겹침 조인 연산을 위한 선택도 추정 기법)

  • Lee, Myoung-Sul;Lee, Jong-Yun
    • Journal of KIISE:Databases
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    • v.35 no.1
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    • pp.54-66
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    • 2008
  • A spatio-temporal join is an expensive operation that is commonly used in spatio-temporal database systems. In order to generate an efficient query plan for the queries involving spatio-temporal join operations, it is crucial to estimate accurate selectivity for the join operations. Given two dataset $S_1,\;S_2$ of discrete data and a timestamp $t_q$, a spatio-temporal join retrieves all pairs of objects that are intersected each other at $t_q$. The selectivity of the join operation equals the number of retrieved pairs divided by the cardinality of the Cartesian product $S_1{\times}S_2$. In this paper, we propose aspatio-temporal histogram to estimate selectivity of spatio-temporal join by extending existing geometric histogram. By using a wide spectrum of both uniform dataset and skewed dataset, it is shown that our proposed method, called Spatio-Temporal Histogram, can accurately estimate the selectivity of spatio-temporal join. Our contributions can be summarized as follows: First, the selectivity estimation of spatio-temporal join for discrete data has been first attempted. Second, we propose an efficient maintenance method that reconstructs histograms using compression of spatial statistical information during the lifespan of discrete data.

A Research Review of High-technology AAC Intervention for Individuals with Disabilities (장애인을 위한 하이-테크놀로지 보완·대체의사소통체계 실험 연구 동향 분석)

  • Song, Jaeok;Jeon, Byung-un
    • 재활복지
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    • v.20 no.4
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    • pp.203-228
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    • 2016
  • The purpose of this study was to find out the recent trend of high-tech AAC intervention studies for individuals with disabilities. Electronic database searches were completed to identify studies published between 2009 and 2016. 46 studies were identified for inclusion in this review. The studies were classified as participants, research design, intervention settings, independent variables, dependent variables, communication skills by High-tech device, type of high-tech AAC device. Across these studies, intervention was provided to total of 126 participants. Most participants are aged 6-11 and the most common diagnosis was autistic spectrum disorder. Most common study designs were multiple probe design and multiple treatment design. The majority of studies implemented interventions in a special education school(classroom) setting. The majority of studies implemented interventions to compare the effect of high-tech and low-tech AAC device interventions. The majority of targeted behavioral outcomes were communication skills. Tablet PC was the most frequently used for intervention in both domestic and foreign studies. The most common softwares were 'My talky' in domestic studies and 'Proloquo2Go' in foreign studies. The synthesis of evidence describing views of users and providers and the implementation of high-tech AAC device can provide valuable data to inform intervention studies and functional outcome measures. Suggestions for the future research are discussed.

Validation of Sea Surface Wind Estimated from KOMPSAT-5 Backscattering Coefficient Data (KOMPSAT-5 후방산란계수 자료로 산출된 해상풍 검증)

  • Jang, Jae-Cheol;Park, Kyung-Ae;Yang, Dochul
    • Korean Journal of Remote Sensing
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    • v.34 no.6_3
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    • pp.1383-1398
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    • 2018
  • Sea surface wind is one of the most fundamental variables for understanding diverse marine phenomena. Although scatterometers have produced global wind field data since the early 1990's, the data has been used limitedly in oceanic applications due to it slow spatial resolution, especially at coastal regions. Synthetic Aperture Radar (SAR) is capable to produce high resolution wind field data. KOMPSAT-5 is the first Korean satellite equipped with X-band SAR instrument and is able to retrieve the sea surface wind. This study presents the validation results of sea surface wind derived from the KOMPSAT-5 backscattering coefficient data for the first time. We collected 18 KOMPSAT-5 ES mode data to produce a matchup database collocated with buoy stations. In order to calculate the accurate wind speed, we preprocessed the SAR data, including land masking, speckle noise reduction, and ship detection, and converted the in-situ wind to 10-m neutral wind as reference wind data using Liu-Katsaros-Businger (LKB) model. The sea surface winds based on XMOD2 show root-mean-square errors of about $2.41-2.74m\;s^{-1}$ depending on backscattering coefficient conversion equations. In-depth analyses on the wind speed errors derived from KOMPSAT-5 backscattering coefficient data reveal the existence of diverse potential error factors such as image quality related to range ambiguity, discrete and discontinuous distribution of incidence angle, change in marine atmospheric environment, impacts on atmospheric gravity waves, ocean wave spectrum, and internal wave.

A study on deep neural speech enhancement in drone noise environment (드론 소음 환경에서 심층 신경망 기반 음성 향상 기법 적용에 관한 연구)

  • Kim, Jimin;Jung, Jaehee;Yeo, Chaneun;Kim, Wooil
    • The Journal of the Acoustical Society of Korea
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    • v.41 no.3
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    • pp.342-350
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    • 2022
  • In this paper, actual drone noise samples are collected for speech processing in disaster environments to build noise-corrupted speech database, and speech enhancement performance is evaluated by applying spectrum subtraction and mask-based speech enhancement techniques. To improve the performance of VoiceFilter (VF), an existing deep neural network-based speech enhancement model, we apply the Self-Attention operation and use the estimated noise information as input to the Attention model. Compared to existing VF model techniques, the experimental results show 3.77%, 1.66% and 0.32% improvements for Source to Distortion Ratio (SDR), Perceptual Evaluation of Speech Quality (PESQ), and Short-Time Objective Intelligence (STOI), respectively. When trained with a 75% mix of speech data with drone sounds collected from the Internet, the relative performance drop rates for SDR, PESQ, and STOI are 3.18%, 2.79% and 0.96%, respectively, compared to using only actual drone noise. This confirms that data similar to real data can be collected and effectively used for model training for speech enhancement in environments where real data is difficult to obtain.

Incidence and Spectrum of Chromosomal Abnormalities associated with Spontaneous Abortions in Korea: 470 Products of Conception over a Period of 6 Years (2005-2010) (국내 자연유산에 의한 수태산물 핵형분석에서 관찰된 염색체 이상의 발생율과 유형: 6년(2005-2010)간 수태산물 470예 분석)

  • Han, Sung-Hee;An, Jeong-Wook;Yang, Young-Ho;Kim, Young-Jin;Cho, Han-Ik;Lee, Kyoung-Ryul
    • Journal of Genetic Medicine
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    • v.8 no.1
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    • pp.44-52
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    • 2011
  • Purpose: Cytogenetic analysis of spontaneous abortions (SABs) provides valuable information to establish the causes of fetal loss, information that is essential to provide accurate reproductive and genetic counseling couples. Such analysis also provides information on the frequencies and types of chromosomal abnormalities and associated risks of recurrence. However, there have only been a few reports of chromosomal abnormalities in small samples of SABs in the Korean population. Here, we report the incidence and spectrum of chromosomal abnormalities for cases of 470 SAB in Korea. Material and Methods: Between 2005 and 2010, a total of 470 products of conception (POC) resulting from SABs were submitted to our laboratory for cytogenetic analysis from various medical sites in Korea. The incidences and types of specific chromosomal abnormalities were determined. The abnormalities were distinguished by gestational age at the time of SAB and by maternal age. Results: The frequency of chromosomal abnormalities in POCs was 54.3% (255/470), including 228 (89.3%) numerical and 27 (10.7%: 3 balanced and 24 unbalanced) structural abnormalities. Among the numerical abnormalities, trisomy was predominant (67.0%), followed by monosomy X (12.5%), polyploidy (8.2%), triple X (0.8%), and autosomal monosomy (0.8%). The overall sex ratio (male: female) among the 470 POCs with normal and abnormal karyotypes were 0.58 and 0.65, respectively. Trisomies were identified for each autosome, with the exceptions of 1, 3, and 19. Among the 171 autosomal trisomies, trisomy 16 was the most common (19.9%), followed by trisomy 22 (13.5%), trisomy 21 (12.3 %), trisomy 15 (9.9%), and trisomies 18 and 13 (5.3%). The frequency of chromosomal abnormalities decreased with gestational age and increased with maternal age, but only because of increases in trisomies and complex abnormalities. Conclusions: We have presented a large collection of cytogenetic data for SABs collected during the past 6 years and provided a database for prenatal genetic counseling of parents who have experienced SABs in Korea.

Characteristics of Spectra of Daily Satellite Sea Surface Temperature Composites in the Seas around the Korean Peninsula (한반도 주변해역 일별 위성 해수면온도 합성장 스펙트럼 특성)

  • Woo, Hye-Jin;Park, Kyung-Ae;Lee, Joon-Soo
    • Journal of the Korean earth science society
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    • v.42 no.6
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    • pp.632-645
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    • 2021
  • Satellite sea surface temperature (SST) composites provide important data for numerical forecasting models and for research on global warming and climate change. In this study, six types of representative SST composite database were collected from 2007 to 2018 and the characteristics of spatial structures of SSTs were analyzed in seas around the Korean Peninsula. The SST composite data were compared with time series of in-situ measurements from ocean meteorological buoys of the Korea Meteorological Administration by analyzing the maximum value of the errors and its occurrence time at each buoy station. High differences between the SST data and in-situ measurements were detected in the western coastal stations, in particular Deokjeokdo and Chilbaldo, with a dominant annual or semi-annual cycle. In Pohang buoy, a high SST difference was observed in the summer of 2013, when cold water appeared in the surface layer due to strong upwelling. As a result of spectrum analysis of the time series SST data, daily satellite SSTs showed similar spectral energy from in-situ measurements at periods longer than one month approximately. On the other hand, the difference of spectral energy between the satellite SSTs and in-situ temperature tended to magnify as the temporal frequency increased. This suggests a possibility that satellite SST composite data may not adequately express the temporal variability of SST in the near-coastal area. The fronts from satellite SST images revealed the differences among the SST databases in terms of spatial structure and magnitude of the oceanic fronts. The spatial scale expressed by the SST composite field was investigated through spatial spectral analysis. As a result, the high-resolution SST composite images expressed the spatial structures of mesoscale ocean phenomena better than other low-resolution SST images. Therefore, in order to express the actual mesoscale ocean phenomenon in more detail, it is necessary to develop more advanced techniques for producing the SST composites.