• Title/Summary/Keyword: Specific plant

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Species-specific Detection of Erwinia pyrifoliae by PCR Assay Using Enterobacterial Repetivive Intergenic Consensus (ERIC) Primers

  • Park, Duck-Hwan;Thapa, Shree Prasad;Kim, Won-Sik;Hur, Jang-Hyun;Lim, Chun-Keun
    • The Plant Pathology Journal
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    • v.26 no.3
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    • pp.267-270
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    • 2010
  • We designed a sensitive and specific PCR-based method with enterobacterial repetitive intergenic consensus (ERIC) primer to detect Erwinia pyrifoliae, which cause shoot blight in Asian pear, from a mixed culture and infected plant materials. The primers specifically detected only E. pyrifoliae and showed no cross-reactivity with other bacterial phytopathogens.

Characteristics of water treatment plant sludges on raw water source (취수원별 정수장 슬러지의 물리화학적 특성)

  • Moon, Yong-Taik;Kim, Byung-Goon
    • Journal of environmental and Sanitary engineering
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    • v.21 no.3 s.61
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    • pp.37-43
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    • 2006
  • Recently, needs for reuse of sludge produced from WTP(water treatment plant) have been increased with shortage of landfill sites and difficulties of the treatment and disposal processes. Therefore, Reusing is becoming an Increasingly popular waste management alternative to divert waste from landfills. In order to research the characteristics of WTP sludges, we used the sludges of C WTP which intake the lake Dae-Cheong and the sludges of S WTP which intake Keum river, The specific surface area of C and S WTP sludges were $0.9986m^2/cc\;and\;1.874m^2/cc$, respectively. The gravity was about $2.0{\sim}2.4$ which are scope of peat or loamy clay. The major minerals of C WTP sludges were kaolinite(48.4%), muscovite(19.5%), and quartz(16.7%). Also, muscovite(31.6%), quartz(30.3%), and kaolinite(17.3%) in S WTP sludges were major minerals.

Allelopathy of Tagetes minuta L. Aqueous Extracts on Seed Germination and Root Hair Growth

  • Kil, Ji-Hyun;Shim, Kew-Cheol;Lee, Kyu-Jin
    • The Korean Journal of Ecology
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    • v.25 no.6
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    • pp.395-398
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    • 2002
  • Present paper showed allelopahtic effects of Tagetes minuta aqueous extracts on seed germination and root hair development. Allelopathy of aqueous extracts derived from T. minuta examined using two test plant species (Lotus comiculatus var. japonicus and Lactuca sativa). The seeds of test species were inoculated in petri dishes containing 0, 10,50 and 100% aqueous extracts from T. minuta. At day 5, the relative seed germination ratio to control was evaluated, and the development of seedling root hairs was observed through light microscopy. Seed germination of L. comiculatus var. japonicus was significantly inhibited proportional to the concentrations of aqueous extract, but that of L. sativa wasn't inhibited. The inhibitory allelopathic effect of T. minuta was found in the development and growth of seedling root hairs. It was concluded that the inhibitory allelophatic effects have been to be investigated using various bioassay, for the allelopathy of plant species shows species-specific and organ-specific.

A Study on the Heat Transfer Reduction due to the Clinker in the Thermal Poorer Plant (화력발전소에서 용융회가 열전달 감소에 미치는 영향에 관한 연구)

  • Kang, H.C.;Lee, K.W.
    • Journal of Power System Engineering
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    • v.4 no.1
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    • pp.13-19
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    • 2000
  • This study was conducted for the heat transfer reduction due to the clinker formed in the furnace of the thermal power plant. The thermal properties of clinker such as thermal conductivity, specific heat, density and void fraction were measured. The thermal conductivities of the clinker were ranged $0.32-0.54W/m{\cdot}K$ and the average specific heat and the void fraction were $930J/kg{\cdot}K$ and 0.36 respectively. The thermal resistance of clinker was the greatest among the thermal resistances. It was found that the clinker reduces more than 90% of the heat transfer if the clinker is thicker than 10 cm.

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Rapid Identification of Potato Scab Causing Streptomyces spp. Using Pathogenicity Specific Primers

  • Shin, Pyung-Gyun;Kim, Jeom-Soon;Hahm, Young-Il
    • The Plant Pathology Journal
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    • v.18 no.6
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    • pp.338-341
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    • 2002
  • The potato scab is caused by several species of Streptomyces. Among these species, only pathogenic strains were found to produce thaxtomin A characterized by necrotic bioassay and HPLC. In this study, identification of the pathogenic strains of Streptomyces was performed through the polymerase chain reaction (PCR) by using specific pathogenicity primer sets derived from the nec1 gene sequences of Streptomyces scabies. The expected PCR products were obtained approximately 580 bp and confirmed by sequencing. This PCR technique can be used effectively to identify the pathogenic Streptomyces species, that cause scab on potato tubers.

Prediction of the Noise Levels for a Newly-founded Petrochemical Plant (신설 석유화학 공장의 소음도 예측)

  • 윤세철;이해경
    • Journal of the Korean Society of Safety
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    • v.11 no.4
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    • pp.135-142
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    • 1996
  • Prolonged in-plant personnel exposure to high noise levels results in permant hearing damage. There are no way to correct this hearing damage by treatment or use of hearing aids. Therefore, every employer is responsible for providing a workplace free of such hazards as excessive noise. This study was carried out to evalute and predict a given noise environment based on specific limit as the noise guarantee for a newly-founded petrochemical plant. The maximum total sound level should not exceed 85dBA in the work area, except where the area is defined as a restricted area and 70dBA at the plant boundary. Prediction of the noise levels within the plant area for a newly-founded petrochemical plant was achieved by dividing all plant area into 20m$\times$20m regular grid spaces and noise level inside the area or unit that in-plant personel exposure to high noise levels was estimated computed into 5m$\times$5m regular grid spaces. The noise level at the grid point that was propagated from each of the noise sources(equipments) computed using the methematical formula was defined as follows : $SPL_2$=$SPL_1-20log{\frac{r_2}{r_1}}$(dB) where $SPL_1$ =sound pressure level at distance $r_1$ from the source $SPL_2$=sound pressure level at distance $r_2$ from the source As a result, the equipments exceeded noise limit or irritaring noise levels were identified on the specific grid coordinates. As for equipments in the area that show high noise levels, appropriate counter-measures for noise control (by barriers, enclosure, silencers, or the change of equipments, for example) should be reviewed. Methods for identifying sources of noise applied in this study should be the model for prediction of the noise levels for any newly-founded plant.

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Development and Evaluation of Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Tylenchulus semipenetrans Using DNA Extracted from Soil

  • Song, Zhi-Qiang;Cheng, Ju-E;Cheng, Fei-Xue;Zhang, De-Yong;Liu, Yong
    • The Plant Pathology Journal
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    • v.33 no.2
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    • pp.184-192
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    • 2017
  • Tylenchulus semipenetrans is an important and widespread plant-parasitic nematode of citrus worldwide and can cause citrus slow decline disease leading to significant reduction in tree growth and yield. Rapid and accurate detection of T. semipenetrans in soil is important for the disease forecasting and management. In this study, a loop-mediated isothermal amplification (LAMP) assay was developed to detect T. semipenetrans using DNA extracted from soil. A set of five primers was designed from the internal transcribed spacer region (ITS1) of rDNA, and was highly specific to T. semipenetrans. The LAMP reaction was performed at $63^{\circ}C$ for 60 min. The LAMP product was visualized directly in one reaction tube by adding SYBR Green I. The detection limit of the LAMP assay was $10^{-2}J2/0.5g$ of soil, which was 10 times more sensitive than conventional PCR ($10^{-1}J2/0.5g$ of soil). Examination of 24 field soil samples revealed that the LAMP assay was applicable to a range of soils infested naturally with T. semipenetrans, and the total assay time was less than 2.5 h. These results indicated that the developed LAMP assay is a simple, rapid, sensitive, specific and accurate technique for detection of T. semipenetrans in field soil, and contributes to the effective management of citrus slow decline disease.

Identification of Brucella melitensis isolates originating from Mongolia and diagnostic real-time PCR evaluation using a specific SNP (몽골 유래 Brucella melitensis 동정 및 특이 SNP를 이용한 real-time PCR법에 의한 진단 평가)

  • Kang, Sung-Il;Kim, Ji-Yeon;Kim, Suk Mi;Lee, Jin Ju;Sung, So-Ra;Kim, Yeon-Hee;Jung, Suk Chan;Her, Moon
    • Korean Journal of Veterinary Research
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    • v.55 no.2
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    • pp.105-110
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    • 2015
  • A real-time PCR assay using hybridization probe (HybProbe) has been developed to detect Brucella (B.) melitensis strains. The primer and HybProbe sets were designed based on the gap gene of chromosome I with a specific single nucleotide polymorphism of B. melitensis. Specificity of the assay was confirmed by comparison to reference Brucella species and other related strains. In the melting curve analysis, B. melitensis generated a peak at $67^{\circ}C$ unlike those for other Brucella species observed at $61^{\circ}C$. Sensitivity of the assay for B. melitensis ranged from 20 ng to 200 fg of genomic DNA. The ability to identify 94 Mongolian B. melitensis isolates using the real-time PCR assay was identical to that of classical biotyping methods and differential multiplex PCR. These data showed that this new molecular technique is a simple and quick method for detecting B. melitensis, which will be important for the control and prevention of brucellosis.

Platform of Hot Pepper Defense Genomics: Isolation of Pathogen Responsive Genes in Hot Pepper (Capsicum annuum L.) Non-Host Resistance Against Soybean Pustule Pathogen (Xanthomonas axonopodis pv. glycines)

  • Lee, Sang-Hyeob;Park, Do-Il
    • The Plant Pathology Journal
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    • v.20 no.1
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    • pp.46-51
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    • 2004
  • Host resistance is usually parasite-specific and is restricted to a particular pathogen races, and commonly is expressed against specific pathogen genotypes. In contrast, resistance shown by an entire plant species to a species of pathogen is known as non-host resistance. Therefore, non-host resistance is the more common and broad form of disease resistance exhibited by plants. As a first step to understand the mechanism of non-host plant defense, expressed sequence tags (EST) were generated from a hot pepper leaf cDNA library constructed from combined leaves collected at different time points after inoculation with non-host soybean pustule pathogen (Xanthomonas axonopodis pv. Glycines; Xag). To increase gene diversity, ESTs were also generated from cDNA libraries constructed from anthers and flower buds. Among a total of 10,061 ESTs, 8,525 were of sufficient quality to analyze further. Clustering analysis revealed that 55 % of all ESTs (4685) occurred only once. BLASTX analysis revealed that 74% of the ESTs had significant sequence similarity to known proteins present in the NCBI nr database. In addition, 1,265 ESTs were tentatively identified as being full-length cDNAs. Functional classification of the ESTs derived from pathogen-infected pepper leaves revealed that about 25% were disease- or defense-related genes. Furthermore, 323 (7%) ESTs were tentatively identified as being unique to hot pepper. This study represents the first analysis of sequence data from the hot pepper plant species. Although we focused on genes related to the plant defense response, our data will be useful for future comparative studies.

Development of a CMS-specific marker based on chloroplast-derived mitochondrial sequence in pepper

  • Jo, Yeong Deuk;Jeong, Hee-Jin;Kang, Byoung-Cheorl
    • Plant Biotechnology Reports
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    • v.3 no.4
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    • pp.309-315
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    • 2009
  • Molecular markers developed from the flanking sequences of two cytoplasmic male sterility (CMS)-associated genes, orf456 and ${\Psi}atp6-2$, have been used for marker-assisted selection of CMS in pepper. However, in practice, the presence of orf456 and ${\Psi}atp6-2$ at substoichiometric levels even in maintainer lines hampers reliable selection of plants containing the CMS gene. In this study, we developed a novel CMS-specific molecular marker, accD-U, for reliable determination of CMS lines in pepper, and used the newly and previously developed markers to determine the cytoplasm types of pepper breeding lines and germplasms. This marker was developed from a deletion in a chloroplast-derived sequence in the mitochondrial genome of a CMS pepper line. CMS pepper lines could be unambiguously determined by presence or absence of the accD-U marker band. Application of orf456, ${\Psi}atp6-2$and accD-U to various pepper breeding lines and germplasms revealed that accD-U is the most reliable CMS selection marker. A wide distribution of orf456, but not ${\Psi}atp6-2$, in germplasms suggests that the pepper cytoplasm containing both orf456 and ${\Psi}atp6-2$ has been selected as CMS cytoplasm from cytoplasm containing only orf456. Furthermore, factors other than orf456 may be required for the regulation of male sterility in pepper.