• Korean Journal of Soil Science and Fertilizer
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• v.40 no.3
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• pp.221-228
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• 2007

Quantitative analysis of distribution characteristics of soils in Jeju Island was conducted by using geographic information system (GIS) technology. Soil series could be classified 5 groups after cluster analysis with proximity ratios among soil series which mean ratios of boundary lengths of other soils to total boundary length. Classification with proximity only was similar to conventional classification system at detailed soil map although conventional system was made from several criteria such as soil color, altitude and chemical characteristics of soils. Altitudinal sequence of soil series was also suggested from representative altitudes of them which could be found from areal distribution curve along altitudes. The sequence was brown forest soils - black soils - very dark brown soils - dark brown soils from the peak of Halla Mt. to the coast on all sides, which maybe related to pedogenesis process in Jeju Island.

• The Korean Journal of Quaternary Research
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• v.18 no.2 s.23
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• pp.33-42
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• 2004

In South Korea a Pedo-sedimentary Sequence(PS) indicating the Last Glacial Maximun(LGM) is typified y a brown to dark brown, relatively stiff paleosol layers formed by repetitive freezing and thawing processes which in turn left characteristi glossic textures in soil-solum, polygolnal structures with a flagipans, vertical soil wedges or freezing cracks, and horizontal foliations, As a pre-LGM sedimentary sequences (older than 25Ka), the Old Fluvial Sequence(OFS) overlain by the Slope Sedimentary Sequence(SS) are distributed commonly at the base level higher than 14-15m above present river-bed along the major river basin. After the LGM (ca. 18Ka), the Young Fluvial Sequence(YFS) appears at an altitude ascending order of sedimentary profiles. In this fluvial organic muds of Jangheungri site(Jinju), Sorori site(Cheonwon), and Youngsan estruarine rivermouth(Mokpo) were exemplified in order to interpret their formation ages and environments. As result of $^{14}C$ datings, the formation ages of te organic muds are Boelling to Alleroed (MIS-1). These organic muds were fomed in fluvial backswamp or local pond/bog in response to shifting fluvial system. On the basis of palynological production dominant with Abies/Picea-Betula and Ranunculaceae, Compositae, Cyperaceae, and Graminae, it was interpreted that more boreal to subboreal condition was prevailed rather than temperate like today during the formation of organic muds and soil moisture condition was a repetition of wet and dry condition.

• Food Science of Animal Resources
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• v.35 no.1
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• pp.86-90
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• 2015

In this study, we reported the morphogenetic analysis and genome sequence by genomic analysis of the newly isolated staphylococcal phage SMSAP5 from soil of slaughterhouses for cattle. Based on transmission electron microscopy evident morphology, phage SMSAP5 belonged to the Siphoviridae family. Phage SMSAP5 had a double-stranded DNA genome with a length of 45,552 bp and 33 % G+C content. Bioinformatics analysis of the phage genome revealed 43 open reading frames. A blastn search revealed that its nucleotide sequence shared a high degree of similarity with that of the Staphylococcus phage tp310-2. In conclusion, this study is the first report to show the morphological features and the complete genome sequence of the phage SMSAP5 from soil of slaughterhouses for cattle.

• Geotechnical Engineering
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• v.12 no.3
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• pp.149-164
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• 1996

The sequential behavior of earth retaining structure is investigated by using soil springs in elasto -plastic soil. Mathematical model that can be used to construct the p-y curves for subgrade modulus is proposed by using piecewise linear function. The excavation sequence of retaining wall is analyzed by the beam -column method. Reliability on the developed computer program is verfied through the comparison between the prediction and the in -situ measuidments. It is concluded that the proposed method simulates well the construction sequence and thus represents a significant improvement in the prediction of deflections of anchored wall excavation. Based on the results the proposed method can be effectively used for the evaluation of the relative importance of the parameters employed in a sensitivity analysis.

• Korean Journal of Microbiology
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• v.46 no.4
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• pp.405-408
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• 2010

Diversity of myxobacteria in five soil samples from Asansi and Uponeup in Korea was explored by means of polymerase chain reaction (PCR) using primers that specifically bind 16S rDNA of myxobacteria. DNA sequence analysis of 76 PCR fragments containing myxobacterial 16S rDNA revealed five putative novel myxobacterial genera whose 16S rDNA sequences shared <95% sequence identity with those of the type strains. This finding indicates the presence of many uncultured and unidentified myxobacterial species in Korean soil.

• Journal of the Korean Geographical Society
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• v.44 no.4
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• pp.463-480
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• 2009

The weathering properties and provenance of loess-paleosol sequence deposited on gravel layer of river terrace in Bongdong-eup, Wangju-gun, Jeonbuk Province are examined using soil analysis, magnetic susceptibility measurement, grain size and element analysis. The Bongdong section consists of, from top to bottom, Layer 1(paleosol), Layer 2(loess), Layer 3(paleosol) and the gravel layer of river terrace. The magnetic susceptibility values show the systematic variations in the sequence and the results of grain size analysis reveal that the sequence was deposited by not fluvial or slope process, but eolian process, and that contains finer materials than the Daecheon loess and Chinese Loess Plateau. Among the results of soil analysis, organic contents indicate systematic variations similar to the magnetic susceptibility. The wet soil colors further reflect the characteristics of the sequence rather than the dry soil colors. Based on the analytical results of major and rare earth elements, the eolian materials contained in the sequence were deposited by the materials originated from the areas where the Chinese Loess Plateau has been originated or the reworked materials from the Chinese Loess Plateau, and after the depositions, the materials experienced the intensive chemical weathering under the humid-warm climatic conditions in the Korean Peninsula.

• Proceedings of the Korean Society of Soil Zoology Conference
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• 2003.06a
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• pp.1-2
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• 2003

• Journal of Life Science
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• v.16 no.2 s.75
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• pp.360-364
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• 2006

Fibrin clots of blood vessels are one of the serious factor caused cardiovascular disease. The development of a antithrombotic and thrombolysis solvent is necessary to prevent and treat these diseases. It has been reported that a strong fibrin-specific fibrinolytic enzyme was produced from a Korean fermented soybean paste similar to Japanese miso. We have been screened the known or novel fibrinolytic enzymes by activity-based and sequence-based screening from soil DNA metagenome library containing all kinds of environmental genomic DNA. The activity-based screening was determined the protease activity on 0.5% skim milk. For sequence-based screening, we designed a set of primer expanding gene sequence of fibrinolytic enzyme, performed PCR and selected clones showing the expected size of amplicons from metagenome library. Transformation of the gene encoding fibrinolytic enzyme was carried out with commercial vectors and their transformants were selected. Finally, we found 15 positive clones from metagenome library. Then each of sequences were analyzed and identified as similar or known the clones of nattokinase. We are going to perform full sequence of each clones, ligate with expression vector, transform into competent cells and then determine activity of expressed enzymes.

• Korean Journal of Microbiology
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• v.55 no.2
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• pp.177-179
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• 2019

Pseudomonas kribbensis CHA-19 was isolated from a temperate forest soil (mid latitude) in New Jersey, USA, for its ability to degrade humic acids, a main component of humic substances (HS), and subsequently confirmed to be able to decolorize lignin (a surrogate for HS) and catabolize lignin-derived ferulic and vanillic acids. The draft genome sequence of CHA-19 was analyzed to discover the putative genes for depolymerization of polymeric HS (e.g., dye-decolorizing peroxidases and laccase-like multicopper oxidases) and catabolic degradation of HS-derived small aromatics (e.g., vanillate O-demethylase and biphenyl 2,3-dioxygenase). The genes for degradative activity were used to propose a HS degradation pathway of soil bacteria.

• Journal of Korean Society of Forest Science
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• v.96 no.4
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• pp.425-431
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• 2007

To investigate genetic diversity and PCR detection of Rhizina undulata, PCR detection and sequence analysis of rDNA ITS region of R. undulata in soil were analyzed and developed. The length of partial 18S rDNA from four R. undulata isolates were 1,375 nt. The sequence similarity of R. undulata isolates was 100%. The rDNA ITS regions of R. undulata isolates were 585 nt long. Nucleotide sequencing of the ITS regions showed that PDK-1, PTT-1 and PDJ-9 isolates had 100% sequence identity. But, PDS-5 isolate differed from the three isolates by two nucleotide substitution. R. undulata-specific primers designed by the sequence of ITS region were used in PCR detection of R. undulata. PCR products about 525 bp size, which is specific to R. undulata, were amplified from total DNAs of R. undulata isolates. To assay the sensitivity of PCR detection by R. undulata ITS-specific primer, purely cultured mycelial suspension of R. undulata was serially diluted and mixed with 100g of sterile sandy loam soil, respectively. And then, PCR products of total DNAs extracted from each mycelium-soil mixtures were analysed. The PCR protocol could detected up to 1ng mycelium of R. undulata within 100g of soil.