• Journal of Ecology and Environment
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• v.48 no.2
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• pp.163-172
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• 2024

Background: Fruit bats are natural carriers of Nipah virus (NiV). The primary objective of this study is to identify potential reservoir species in a selected geographic regions. It is necessary to determine an accurate species identification of the associated reservoir bat species distributed in a specific region. Results: In this study, we collected 20 different bat specimens from the NiV-prone area of the Kushtia district. Among these, 14 were tissue samples (BT-1-14) and six were fecal samples (BF-1-6). We used the mitochondrial gene cytochrome b, one of the most abundant and frequently used genetic markers, for polymerase chain reaction amplification and sequencing. Out of the 20 samples, 12 tissue samples and 2 fecal samples were successfully amplified and sequenced. However, two tissue samples and four fecal samples yielded chimeric sequences, rendering them unsuitable for annotation. The sequences of the successfully amplified samples were compared to those deposited in the National Center for Biotechnology Information database using basic local alignment search tool to identify the bat specimen collected. The study identified six different bat species using both morphological and genetic data, which may carriers of the NiV. Conclusions: Our results suggest that additional research should be conducted to gather more information on fruit bats from different localities across the country. The study contributes to the establishment of appropriate measures for NiV carrying disease control and management.

• ALGAE
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• v.34 no.4
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• pp.267-275
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• 2019

Three new species of the genus Micractinium were collected from five localities on the South Shetland Islands in maritime Antarctica, and their morphological and molecular characteristics were investigated. The vegetative cells are spherical to ellipsoidal and a single chloroplast is parietal with a pyrenoid. Because of their simple morphology, no conspicuous morphological characters of new species were recognized under light microscopy. However, molecular phylogenetic relationships were inferred from the concatenated small subunit rDNA, and internal transcribed spacer (ITS) sequence data indicated that the Antarctic microalgal strains are strongly allied to the well-supported genus Micractinium, including M. pusillum, the type species of the genus, and three other species in the genus. The secondary structure of ITS2 and compensatory base changes were used to identify and describe six Antarctic Micractinium strains. Based on their morphological and molecular characteristics, we characterized three new species of Micractinium: M. simplicissimum sp. nov., M. singularis sp. nov., and M. variabile sp. nov.

• Journal of Environmental Science International
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• v.5 no.3
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• pp.337-346
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• 1996

The purpose of this study was to provide basic data of the growth characteristics of the landscape trees for better landscape planting design, construction and maintenance through the prediction of landscape change as time passes fly the analysis of survival rate, distribution patterns & increment percent of tree height, width, stem diameter (breast or surface) of widely used six tree species in Seongnam-si Eunhang-jugong apartment housing areas (8 years have passed after landsape alanting work). The main results can be summarized as followed. The tree survival rate of Pinus parviflora was the highest rate 89.2% than any other species, but Acer buergerianum showed the lowest survival rate at that of it 35.0%, & that of Picea abies 70.5 %, Metasequoia glyptostroboides 71.6%, Maknolia denudata 38.9%, Acer paimatum was 71.7%, As a whole, the tree survival rate of coniferous trees were relatively high. The tree height increment percent of the deciduous species wert relatively high. And that of Metasequoia glyptostroboides was the highest rate 11.61% than any other species, but that of Magnolia denudata was the lowest rate 5.59% than any other species. According to this results, the increment percent of trees in this apartment areas were comparatively lower than that of each related species planted in nursery area. And this results would be considered when landscape experts do landscape planting design, construction & maintenance. The distribution patterns of present tree size showed a Normal Distribution like any other biological features.

• Journal of the Korean Wood Science and Technology
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• v.46 no.4
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• pp.402-414
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• 2018

Species identification of wood provides important information for archaeology, restoration of cultural assets, preventing illegal logging, and more. Wood species are usually identified based on their anatomical features with the use of a microscope. However, this method may not be able to distinguish between anatomically similar species or subspecies. To overcome this problem, wood species need to be identified at the molecular level using DNA sequencing. However, unlike living plant cells, wood is difficult to pulverize using a mortar, and DNA extraction from dried wood is challenging. To solve these problems, we propose a pretreatment method in which wood is pulverized using 60-grit sandpaper and hydrated with water for 2 days. Using this method, we were able to stably amplify the rpoB gene from the extracted DNA of Pinus rigida. In addition, sequence analysis of the rpoB gene revealed six single nucleotide polymorphisms (SNPs), which classified the rpoB sequences in the genus Pinus into five groups. Our data indicate that although these SNPs were not suitable for species identification, they can potentially be used to determine the origin of different wood subspecies or individual samples of wood.

• The Korean Journal of Malacology
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• v.17 no.1
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• pp.1-6
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• 2001

The genetic relationship was examined with PCR-RAPD markers among three scallop species, Chlamys farreri farreri, Patinopecten yessoensis, and Agropecten irradians. Six primers were selected from 60 primers used to compare PCR-RAPD profiles among species. All primers showed distinct RAPD band patterns between the three species. In Chiamys farreri farreri, the morphological characteristics such as shell size and color were considerably different between the two geographical populations. RAPD profile, however, showed that no significant genetic differences were found between the two geographical populations. Polymorphic alleles were observed within a population of each species. Thus, PCR-RAPD markers are useful in identifying scallop species and in understanding scallop population genetic structure.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.49 no.2
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• pp.214-223
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• 2016

Joint time-frequency images of the broadband acoustic echoes of six fish species were obtained using the smoothed pseudo-Wigner-Ville distribution (SPWVD). The acoustic features were extracted by changing the sliced window widths and dividing the time window by a 0.02-ms interval and the frequency window by a 20-kHz bandwidth. The 22 spectrum amplitudes obtained in the time and frequency domains of the SPWVD images were fed as input parameters into an artificial neural network (ANN) to verify the effectiveness for species-dependent features related to fish species identification. The results showed that the time-frequency approach improves the extraction of species-specific features for species identification from broadband echoes, compare with time-only or frequency-only features. The ANN classifier based on these acoustic feature components was correct in approximately 74.5% of the test cases. In the future, the identification rate will be improved using time-frequency images with reduced dimensions of the broadband acoustic echoes as input for the ANN classifier.

• Journal of Microbiology
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• v.43 no.2
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• pp.158-165
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• 2005

Psilocybe fagicola comprises a complex of more than eight species, six of them in Mexico, and all of them possessing a long pseudorhiza, a characteristic not listed by Heim and Cailleux in 1959 in the original description of the type species, but described by Guzman in 1978 and 1983. The description of Psilocybe fagicola s.s. is here emended to include the length of the cheilocystidia of(6-) 12-20 (-30) llm, as well as the absence or scarcity of pleurocystidia. Psilocybe xalapensis and P. wassoniorum are considered to be synonymous with P. fagicola s.s. However, Psilocybe banderillensis and P. herrerae from Mexico, P. columbiana from Colombia, and P. keralensis from India are considered to be valid species within this complex. Moreover, P. novoxalapensis and P. teofilae, both from Mexico, are described as new species. Length of spores, presence or absence of pleurocystidia and their variations, and type of cheilocystidia constitute the principal defining characteristics of the species. Setaceous hyphae at the base of the stipe, as well as caulocystidia, lack taxonomic value, as do other morphological characteristics, including pileipellis and subpileipellis. A key to the eight considered species is also presented within the paper.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.48 no.1
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• pp.82-87
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• 2015

For the ecological evaluation of marine algal vegetation, flora and their communities were surveyed seasonally at Goseong, on the southern coast of Korea. A total of 102 algal species, comprising 17 green, 18 brown and 67 red algae, was identified. Representative dominant species were assessed as Ulva australis, Sargassum thunbergii, and Gelidium amansii. Of these, Ulva australis was remarkably dominant in all seasons. High biomass of the dominant species were recorded. The total seasonal biomass was highest in winter and lowest in summer. The mean biomass value was $1315.6g/m^2$ across the four seasons. Each species was classified into six functional groups, and two ecological state groups (ESG) were evaluated based on these groups. While ESG I, the late successional species group, formed only 18.6% of the algal community; ESG II, composed of opportunistic species, comprised 81.4%. This suggests that environmental stress has been continuously imposed on the marine algal vegetation of the present study area.

• Journal of Environmental Impact Assessment
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• v.19 no.5
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• pp.483-495
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• 2010

The passenger pigeon (Ectopistes migratorius) was a species of pigeon that was once the most common bird in North America. According to some ornithologists, the number of passenger pigeons is estimated as many as five to six billions at the time when the first Europeans arrived there. But this species became extinct in 1914. There were a multiplicity of causes in the extinction; first, the extension of telegraph lines and railroads into the Middle West of the USA beginning in 1850s, second, the loss of vast feeding, nesting, and roosting sites of the passenger pigeon due to the massive deforestation, third, the rapid population growth of the USA during nineteen century, fourth, the commercial exploitation of the species, and finally, the infirm and weak protective efforts. Some important lessons can be learned from the extinction of the passenger pigeon. First, it shows how much critical the public interest is for a successful conservational movement. Second, it illustrates the need for strong laws and practices in the protection of an endangered species from going extinct. Third, the fate of the passenger pigeon proves a very important principle in conservational biology. That is, for each species (bird or other animal) there is a minimum population to sustain the species. Ecologists generally believe that the extinction of the passenger pigeon was due to the loss of their numbers below the minimum owing to overexploitation.

• Korean Journal Plant Pathology
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• v.10 no.2
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• pp.129-135
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• 1994

Ninety-two isolates of Fusarium species were obtained from Chinese corn samples. The predominant Fusarium species isolated from corn seeds were F. moniliforme, F. proliferatum, F. oxysporum and F. subglutinans, and all 13 species were identified. Each isolate was grown on autoclaved wheat grains and wheat cultures were fed by twenty-one-day-old female rats for the toxicity test. Twenty-six out of 92 isolates caused the death accompanying feed refusal, severe weight loss, liver damage, and hemorrhages in the stomach and intestines. Of the toxigenic isolates, 17 isolates of F. moniliforme, 4 of F. oxysporum, 3 of F. proliferatum, and one of each F. sporotrichioides and unknown species were lethal to rats. The analyses of fumonisin B1 production of the 26 toxigenic Fusarium isolates were carried out by thin layer chromatography and high-performance liquid chromatography, and fumonisin B1 was confirmed by mass spectrometry. Fumonisin B1 was produced in wheat culture at levels ranging from 280 $\mu\textrm{g}$/g to 3,952 $\mu\textrm{g}$/g by all of toxigenic F. moniliforme and F. proliferatum, but by none of the other toxigenic Fusarium species. The present results suggest the high possibility of natural occurrence of fumonisin B1 in corn samples imported from China.