• 제목/요약/키워드: Sequence Pattern Analysis

검색결과 321건 처리시간 0.034초

Antioxidant capacity in seedling of colored-grain wheat under water deficit condition

  • Kim, Dae Yeon;Hong, Min Jeong;Jung, Woo Joo;Seo, Yong Weon
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2017년도 9th Asian Crop Science Association conference
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    • pp.140-140
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    • 2017
  • Nutritious and functional foods from crop have received great attention in recent years. Colored-grain wheat contains high phenolic compound and a large number of flavonoid. The anthocyanin and polyphenolic synthesis and accumulation is generally stimulated in response to biotic or abiotic stresses. Here, we analyzed genome wide transcripts in seedling of colored-grain wheat response to ABA and PEG treatment. About 900 and 1500 transcripts (p-value < 0.05) from ABA and PEG treatment were aligned to IWGSC1+popseq DB which is composed of over 110,000 transcripts including 100,934 coding genes. NR protein sequences of Poaceae from NCBI and protein sequence of transcription factors originated from 83 species in plant transcription factor database v3.0 were used for annotation of putative transcripts. Gene ontology analysis were conducted and KEGG mapping was performed to show expression pattern of biosynthesis genes related in flavonoid, isoflavonoid, flavons and anthocyanin biopathway. DroughtDB (http://pgsb.helmholtz-muenchen.de/droughtdb/) was used for detection of DEGs to explain that physiological and molecular drought avoidance by drought tolerance mechanisms. Drought response pathway, such as ABA signaling, water and ion channels, detoxification signaling, enzymes of osmolyte biosynthesis, phospholipid metabolism, signal transduction, and transcription factors related DEGs were selected to explain response mechanism under water deficit condition. Anthocyanin, phenol compound, and DPPH radical scavenging activity were measured and antioxidant activity enzyme assays were conducted to show biochemical adaptation under water deficit condition. Several MYB and bHLH transcription factors were up-regulated in both ABA and PEG treated condition, which means highly expressed MYB and bHLH transcription factors enhanced the expression of genes related in the biosynthesis pathways of flavonoids, such as anthocyanin and dihydroflavonols in colored wheat seedlings. Subsequently, the accumulation of total anthocyanin and phenol contents were observed in colored wheat seedlings, and antioxidant capacity was promoted by upregulation of genes involved in maintaining redox state and activation of antioxidant scavengers, such as CAT, APX, POD, and SOD in colored wheat seedlings under water deficit condition. This work may provide valuable and basic information for further investigation of the molecular responses of colored-grain wheat to water deficit stress and for further gene-based studies.

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대구지역 안면골 골절의 임상역학적 연구 (Clinical Epidemiologic Study of Facial Bone Fractures in Daegu)

  • 권혁준;한준;김준형;정호윤;김종엽;윤신혁;송철홍;류민희;김용하;서만수
    • Archives of Plastic Surgery
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    • 제34권3호
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    • pp.365-370
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    • 2007
  • Purpose: There are many reports about facial bone fractures, but limited to retrospective data of a single hospital. Etiology and severity of the facial bone fracture have been changed and treatment method and materials have been advanced. In order to reflect those changes and provide up-to-date data of the facial bone fractures in Daegu, we gathered the data and analyzed the epidemiologic study. Methods: The medical records of 1058 fractures in 895 patients were gathered from 5 general hospitals in Daegu during last year and these data were analyzed by following parameters: age, sex, place of residence, occupation, cause of injury, time of injury, location of fracture, length of in-hospital stay, time of operation, treatment method, associated injury, complication. Statistical analysis was performed using the Chi-square test. Results: Most commonly involved age group was 20s(26%) and the sex ratio was 3.4:1(male predominance). Fractures were occurred more in unban and white-color workers. Among variable etiology of injury, traffic accident was the most common cause. Time of injury was heighest at 6 to 7 P.M., on Sunday, in July. Locations of fractures were following sequence: nasal, zygoma, mandible, orbit, maxilla. Mean length of in-hospital stay and time of operation after injury were 6.3 and 3.2 days, respectively. In treatment methods, operative methods were dominant than conservative management and general anesthesia were favored than local anesthesia. Associated injuries were noticed in 188 cases(21.2%) and complications were in 94 cases(8.9%) and among them, ocular problem were common. Conclusion: Compared to previous studies, mean age of occurrence was lowered and the etiologies showed age-specific pattern and reflected the change of lifestyle. In young age groups, sports injury, violence were more dominant and the other hand, traffic accident and fall were dominant in older groups.

신팔달콩 유래 IFS (isoflavone synthase)유전자 클로닝 및 기능 규명 (Cloning and Characterization of Soybean IFS (Isoflavone Synthase) Genes from Korean Cultivar, Sinpaldalkong)

  • Park, Hayng-Mi;Shin, Sang-Hyun;Ko, Jong-Min;Yi, Gi-Hwan;Nam, Min-Hee;Chung, Young-Soo;Chung, Won-Bok;Lee, Jai-Heon;Park, Seong-Whan
    • 생명과학회지
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    • 제14권1호
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    • pp.38-44
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    • 2004
  • 이소플라본의 함량이 매우 높은 것으로 알려진 국내 콩품종 신팔달로부터 2개의 유전자 IFS1 (SinIFS1)과 IFS2(SinIFS2)가 클로닝되었다. 유전자의 염기서열을 밝힌 후, 기존에 알려진 콩과의 다른 IFS 유전자들과 유전자 염기서열의 유사성을 비교 분석하였다. 유전자 SinIFS1은 전체 1,828bp의 nucleotide와 521개의 아미노산으로 이루어져 있었고 SinIFS2의 경우, 1912bp의 nucleotide와 521의 아미노산으로 이루어져 있었다. 두 유전자 모두 cytochrome P45O superfamily의 일원이었고, 상응하는 conserve된 motif들을 가지고 있었다. 콩과의 다른 식물에서 클로닝된 IFS들과의 염기서열비교에서는 매우 높은 염기서열 유사성(98% 이상)이 관측되었다. 유전자의 발현과 유발에 관한 노던분석 실험 결과, 무처리구로 사용한 암처리보다 모두 유발된 유전자의 발현을 나타났는데, 특히 곰팡이 elicitor 처리구의 경우, 무처리보다 6배 이상의 유전자 유발을 보였다. 그 다음으로는 자외선 처리가 높은 유전자 발현 유발효과를 나타내었고, 그 다음으로 저온과 명처리순으로 유발효과를 나타내었다.

대장암과 선종 병변에서 mTOR 신호 단백질의 면역조직화학 염색성 평가 (Evaluation of the Immunohistochemical Staining Pattern of the mTOR Signaling Proteins in Colorectal Cancers and Adenoma Lesions)

  • 김진목;이현욱
    • 대한임상검사과학회지
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    • 제49권4호
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    • pp.470-476
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    • 2017
  • mTOR 신호전달 단백질의 변화는 다양한 종류의 암에서 관찰 되었다. 따라서 이들 단백질은 최근에 암 치료제에 대한 새롭고 흥미로운 표적이 되고 있다. 우리는 대장암과 선종 환자의 mTOR 세포신호의 활성도를 조사하였다. 면역조직화학적 방법으로 대장암과 선종의 세포신호 단백질 성분인 mTOR, p70-S6K, S6, 4EBP1 발현을 분석하였다. 이번 연구는 모두 100개의 예를 악성(Colorectal Adenocarcinoma, CRAC) 40건, 고등급 선종(Adenoma with High grade intraepithelial neoplasms, HIN) 30건, 저등급 선종(Adenoma with Low-grade intraepithelial neoplasms, LIN) 30건으로 분류하여 진행하였다. p-mTOR의 발현률은 LIN 7%, HIN 30%, CRAC 75%였고 p-S6의 발현률 또한 LIN 10%, HIN 27%, CRAC 55%였다. p-mTOR, p-S6의 발현과 선종-선암 연속성은 중요한 상관관계 있다는 것이 발견되었다. 그리고 흥미롭게도 p-S6 발현률은 진행암보다 초기암에서 더 높았다.

서베일런스 네트워크에서 패턴인식 기반의 실시간 객체 추적 알고리즘 (Real-Time Object Tracking Algorithm based on Pattern Classification in Surveillance Networks)

  • 강성관;천상훈
    • 디지털융복합연구
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    • 제14권2호
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    • pp.183-190
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    • 2016
  • 본 논문은 서베일런스 네트워크에서 이동하는 객체 추적 시 영상 데이터의 전송량을 감소시키는 신경망 계산 시간의 단축 알고리즘을 제안한다. 객체 검출은 디지털화 연속된 영상으로부터 객체 존재 유무를 판단하고, 객체가 존재할 경우 영상 내 객체의 위치, 방향, 크기 등을 알아내는 기술로 정의된다. 그러나 영상 내의 객체는 위치, 크기, 빛의 방향 및 밝기, 장애물 등의 환경적 변화로 인해 객체 모양이 다양해지므로 정확하고 빠른 검출이 어렵다. 따라서 본 논문에서는 신경망을 사용하여 몇 가지 환경적 조건을 극복한 정확하고 빠른 객체 검출 방법을 제안한다. 검색 영역의 축소는 영상 내 색상 영역의 분할과 차영상을 이용하였고, 주성분 분석을 통해 신경망의 입력 벡터를 축소시킴으로써 신경망 수행 시간과 학습 시간을 단축시켰다. 실시간으로 입력되는 동영상에서 모두 실험하였으며, 색상 영역의 분할을 사용할 경우 입력 영상의 칼라 설정의 유무에 따른 검출 성공률의 차를 보였다. 실험 결과에서 보면 제안하는 방법으로써 객체의 움직임을 탐지하였을 때 기존의 방법보다 30% 정도 더 높은 인식 성능을 보여준다.

아마추어 씨름 선수들의 부상 발생 양상과 물리치료 이해도에 관한 연구 (The Pattern of Trauma and Level of Understanding to the Physical Therapy of Amateur Ssirum Player)

  • 김종렬;박래준;김철용
    • The Journal of Korean Physical Therapy
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    • 제12권2호
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    • pp.107-119
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    • 2000
  • This study is fulfilled from September 1st to December 31st in 1999 and the object of investigation are all 289 students belong to 5 universities managing amateur Ssirum team in Kyungnam, Kyungpook. Pusan and Seoul(158 people) and 6 high schools(131 people). And these results were derived from percentage and cross analysis of Person Chi-square test ann interview and 47 questioned paper based on this purpose of study. 1. There were no significant differences between high school students and university students in the comprehension of physical therapy and injury occurrence by technique. 2. According to the relation between satisfaction of life as a player and injured part, the injury of soft tissue ranked high among satisfied and unsatisfied people. and the satisfaction or unsatisfaction of practicing place also derived same result. 3. $46.8\%$ of Ssirum players got the injury of soft tissue during practice. the articular injury and bone injury in regular sequence. But there were no relations between the time of injury and the sort of injury. 4. There were no statistical differences ortho sort of injury by technique.(p=0.399). 5. According to the part of injury by using techniques, the injury of soft tissue ranked high$(50.0\%)$, articular injury ranked high$(42.6\%)$ in the leg technique, bone injury ranked high in the leg technique, and nerve injury ranked high in hand technique. 6. The injury of soft tissue ranked high during the practice$(46.8\%)$, practice on the purpose of a match$(50.0\%)$ and match$(41.7\%)$ but there were no relations between the time of injury and son of injury. 7. The part of injury by technique ranked high in the soft tissue$(50.0\%)$, articular injury by leg technique$(42.6\%)$, bone injury in leg and waist technique and nerve injury in hand technique high. 8. The time of injury ranked high during the practice$(65.7\%)$, and $66.1\%$ of injury occurred in the afternoon. 9. During the practice, the cold weather ie related on the rate of injury because $67\%$ of injury occurred in winter, but there are no statistical significance. 10. There were no relations between the satisfaction of place far practice and time of injury. 11. The particular part of injury occurred very much during the match between defense and offense. 12. In the relation between the degree of understanding of physical therapy and the experience of physical therapy, the people who know physical therapy had much experiences of physical therapy(p=.000) And independent of the physical therapy experiences, the effectiveness of physical therapy therapy to players was $48.8\%$, no idea was 42.65 and no effectiveness was $8.7\%$(p=.000). 13. $59.6\%$ of the people admitting the physical therapy effectiveness answered they would follow the order of the doctor and $56.6\%$ of the people not admitting the physical therapy effectiveness answered no.

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개방교합자의 설근과 구륜근 활성도에 관한 연구 (AN ELECTROMYOGRAGHIC STUDY OF MUSCULAR ACTIVITIES OF TONGUE AND LIP MUSCLES IN ANTERIOR OPEN-BITE)

  • 최연석;이기수;박영국
    • 대한치과교정학회지
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    • 제24권2호
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    • pp.233-246
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    • 1994
  • The purpose of the present study was to investigate the difference of muscular activities of the tongue and lip muscles between anterior open-bite and normal occlusion during various function. Thirty eight subjects of 12.1-39.6 years were employed in this study : Eighteen subjects were anterior open-bites and tweenty subjects were normal occlusions. During rest position, maximum effort of lip sealing, command swallow of saliva and sucking & swallowing of juice, the electromyographic datas of the genioglossus, superior longitudinal muscle of tongue, upper and lower orbicularis oris were recorded and integrated with Medelec MS 25 electromyographic machine. Lateral cephalometric radiographs were taken on all subjects for the analysis of tongue posture and size. All data were recored and statistically processed. The findings of this study can be summerized as follows : 1. During the rest position, muscular activity of tongue was higher than that of lip muscle in open-bite, but no difference in normal occlusion group. 2. During the swallowing of juice, the activity of orbicularis oris was higher than that of genioglossus in open-bite. But the normal occusion was showed higher activity of tongue during the swallowing of juice. 3. The open-bite, compared to the normal occlusion, had higher value of tongue muscle activity during the rest position. 4. Compared to normal occlusion group, the open-bite had higher value of lip muscle activity during the sucking and swallowing of juice. 5. During the command swallow of saliva, the normal occlusion was showed harmonious swallowing pattern, but the open-bite showed much variation and disharmony in muscular contraction sequence, tended to absent of lip muscle activity. 6. At the lateral cephalometric radiographs, compared to the normal occlusion, the open-bite was showed lower tongue posture. But no difference was found in intermaxillary space. It is suggested that the open-bite, compared to the normal occlusion, had higher muscular activity of tongue during the rest position and various functions, showed lower tongue posture on the lateral cephalogram. In the development of anterior open-bite malocclusion, these factors may be an etiologic factor.

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Analysis of genetic diversity of cowpea landraces from Korea determined by Simple Sequence Repeats and establishment of a core collection

  • Lee, Jeongran;Baek, Hyung-Jin;Yoon, Mun-Sup;Park, Sang-Koo;Cho, Yang-Hee;Kim, Chang-Yung
    • 한국육종학회지
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    • 제41권4호
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    • pp.369-376
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    • 2009
  • Cowpea might have been introduced from China to Korea and cultivated for several hundred years but it has never been a staple food crop in Korea. In this study, genetic diversity of 492 Korean cowpea landrace accessions that have passport information was estimated using six SSR markers. The mean of Weir's gene diversity was 0.665 from all accessions investigated in the study. Cowpea gene diversity of six local provinces in Korea was ranged from 0.370 in accessions of Gangwon to 0.680 in Jeonra provinces. Low gene diversity of the cowpea genepool of Gangwon province was probably derived from relatively few introductions. Especially SSR markers VM36 and VM39 seem to be good markers to distinguish the Gangwon accessions from others by occurring at a specific locus with higher than 78% of allele frequency. Except for the Gangwon province with the low genetic diversity, gene diversity of cowpea accessions from other provinces was ranged from 0.600 to 0.680 indicating no big differences among provinces. Distribution pattern of the allele frequencies was similar among the other provinces. This may reveal that Korean farmers might exchange cowpea seeds easily with even their neighbors with geographical barriers. A core collection, 100 landraces, ca. 20% of base collection, was developed at the 70% of a similarity coefficient level using random sampling approaches after stratification of the entire landrace collection based on the phenetic dendrogram. The variability of SSR in the base and core collections of Korean cowpea landrace was compared by calculating Weir's gene diversity. The mean of Weir's gene diversity of the core was 0.707 while that of the base collection was 0.665. The higher diversity index in the core collection indicates that it maintains the initial variability and well represents the base collection. The core collection included one of determinate accession (IT 216155) and two of no branching type accessions (IT 103959 and IT 161024). The core collection could be used to guide more efficient management and utilization of the entire collection. This core collection should be revised periodically as additional accessions are collected and further characterization is conducted.

셋톱박스 오디언스 타겟팅을 위한 세션 기반 개인화 추천 시스템 개발 (Personalized Session-based Recommendation for Set-Top Box Audience Targeting)

  • 차지수;정구섭;김우영;양재원;백상덕;이원준;장서호;박태준;정찬우;김우주
    • 지능정보연구
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    • 제29권2호
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    • pp.323-338
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    • 2023
  • 셋톱박스 오디언스(TV 시청자) 타겟팅의 핵심은 오디언스의 시청패턴을 분석하여 광고의 효과성이 높을 것으로 예상되는 오디언스에게 맞춤형 광고를 내보내는 것이다. 세션 기반 추천 시스템은 인터넷 광고 추천, 유저 검색 기록 기반 추천 등에 많이 이용되고 있지만, TV 광고의 측면에서 셋톱박스 데이터 수집의 어려움을 이유로 연구하기에 어려움이 있었다. 또한 오디언스 개인의 식별정보가 있는 데이터에서, 오디언스의 선호가 반영되는 시청 패턴을 모델링하는 데 한계가 있었다. 따라서 본 연구에서는 한국방송광고진흥공사(KOBACO)와 방송3사(SKB, KT, LGU+)와의 협업을 통해 익명화된 오디언스 4,847명의 6개월간 시청 데이터를 확보하여 연구를 진행하였으며, 유저-세션-아이템의 계층적 구조를 가지는 개인화 세션 기반 추천 시스템을 개발하여 성능 검증을 진행하였다. 그 결과, 셋톱박스 오디언스 데이터셋과 그 외 검증을 위한 2개의 데이터셋에서 제안된 모델이 비교 대상 모델보다 높은 성능을 보이는 것을 확인하였다.

RAPD 마커를 이용한 무의 유전자지도 작성 (Construction of a Genetic Linkage Map in Radish(Raphanus sativus L.) Using RAPD Markers)

  • 안춘희;최수련;임용표;정해준;예병우;윤화모
    • Journal of Plant Biotechnology
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    • 제29권3호
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    • pp.151-159
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    • 2002
  • 작물의 신품종 육성 과정에 있어서 선발은 육종의 성패를 좌우하는 중요한 과정이다. 하지만 개체가 나타내는 표현형은 유전적 요인과 환경적 요인이 동시에 작용하여 나타나기 때문에 유전적인 효과만 구분하여 선발하는 것은 매우 어렵다. 최근에 분자생물학 분야의 연구가 급속도로 발전함에 따라 분자 수준의 표지 인자를 유용 유전자의 간접선발 지표로 활용하여 선발 효율을 높일 수 있게 되었다. 작물의 유전자 지도 및 분자 표지인자는 작물 육종에 매우 유용하게 활용될 수 있다. 따라서 본 연구에서는 무에서 양친인 '835'와 'B$_2$'에서 유래한 여교잡 집단 82개체를 이용하여 RAPD 유전자군 지도를 작성하고 관련 마커를 탐색하여 육종에 이용하고자 연구를 수행하였다. Primer 375종류를 이용하여 양친, 835와 B$_2$ 사이의 다형화 밴드 128개를 찾았다. BC$_1$F$_1$집단 조사를 통해 MAPMAK ER/EXP를 이용하여 연관군 지도를 작성하였다. 분리 분석된 RAPD 표지인자 128개 중 126개는 멘델의 이론 분리비 1:1에 적합하였으며. 2개는 동형접합체 (모본형) 쪽으로 편중되어 분리되었다. LOD 3.0 수준에서 128개의 표지인자가 9개의 연관군으로 나뉘어졌고 전체거리는 1,688.3 cM이었으며, 표지인자 간 평균거리는 13.8 cM으로 Lefebvre 등 (1996)이 발표한 자료를 참고하여 무 genome 전체의 유전적 거리를 계산한 결과 무의 유전자지도는 무 genome전체의 68.7%~80.1%를 포함하는 것으로 추정할 수 있었다. RAPD 마커에서 문제시되는 재현성 문제를 검정하기 위해 이를 STS 마커로 변환하고자 OPE10 primer에 의해 증폭된 특정 밴드를 클로닝하고 염기서열을 분석한 다음 얻어진 염기서열을 기본으로 하여 primer를 제작하여 PCR 하였다. 그 결과 10mer인 OPE10을 이용하여 분석했을 때와 동일하였으며 목적 밴드 외 다른 밴드는 생성되지 않아 앞으로 분자 마커로서 충분히 이용될 수 있음을 보여주었다.