• Journal of the Korean Wood Science and Technology
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• v.47 no.1
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• pp.101-109
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• 2019

This paper examines the classification of five coniferous species, including larch (Larix kaempferi), red pine (Pinus densiflora), Korean pine (Pinus koraiensis), cedar (Cryptomeria japonica), and cypress (Chamaecyparis obtusa), using near-infrared (NIR) spectra. Fifty lumber samples were collected for each species. After air-drying the lumber, the NIR spectra (wavelength = 780-2500 nm) were acquired on the wide face of the lumber samples. Soft independent modeling of class analogy (SIMCA) was performed to classify the five species using their NIR spectra. Three types of spectra (raw, standard normal variated, and Savitzky-Golay $2^{nd}$ derivative) were used to compare the classification reliability of the SIMCA models. The SIMCA model based on Savitzky-Golay $2^{nd}$ derivatives preprocessing was determined as the best classification model in this study. The accuracy, minimum precision, and minimum recall of the best model (PCA models using Savitzky-Golay $2^{nd}$ derivative preprocessed spectra) were evaluated as 73.00%, 98.54% (Korean pine), and 67.50% (Korean pine), respectively.

• Fisheries and Aquatic Sciences
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• v.25 no.9
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• pp.489-497
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• 2022

The first specimen (54.8 mm standard length) of Ernogrammus zhirmunskii Markevich & Kharin, 2011, belonging to the family Stichaeidae, was recorded in Dokdo, East Sea, Korea on July 26, 2021. This species was characterized by a single ventral lateral-line canal from the posterior margin of the pelvic-fin base extending to the anus and one or two rigid spines on the posterior part of the anal fin. This species is similar to Ernogrammus hexagrammus and Ernogrammus walkeri but differs in the number of ventral lateral-line canal present, with E. zhirmunskii consisting of one (unpaired) ventral lateral-line canal compared to other two Ernogrammus species, which have a pair of parallel ventral lateral-line canal. For further analysis of species identification, a partial gene sequence from the mitochondrial DNA cytochrome oxidase subunit I (554 bp) of E. zhirmunskii was obtained for the first time. This study documents the first record of E. zhirmunskii in Korean waters and proposes the new Korean name of 'Il-gob-julbe-do-la-chi' for the species.

• Journal of the Korean Wood Science and Technology
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• v.45 no.6
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• pp.797-808
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• 2017

Automatic wood species identification systems have enabled fast and accurate identification of wood species outside of specialized laboratories with well-trained experts on wood species identification. Conventional automatic wood species identification systems consist of two major parts: a feature extractor and a classifier. Feature extractors require hand-engineering to obtain optimal features to quantify the content of an image. A Convolutional Neural Network (CNN), which is one of the Deep Learning methods, trained for wood species can extract intrinsic feature representations and classify them correctly. It usually outperforms classifiers built on top of extracted features with a hand-tuning process. We developed an automatic wood species identification system utilizing CNN models such as LeNet, MiniVGGNet, and their variants. A smartphone camera was used for obtaining macroscopic images of rough sawn surfaces from cross sections of woods. Five Korean softwood species (cedar, cypress, Korean pine, Korean red pine, and larch) were under classification by the CNN models. The highest and most stable CNN model was LeNet3 that is two additional layers added to the original LeNet architecture. The accuracy of species identification by LeNet3 architecture for the five Korean softwood species was 99.3%. The result showed the automatic wood species identification system is sufficiently fast and accurate as well as small to be deployed to a mobile device such as a smartphone.

• Proceedings of the National Institute of Ecology of the Republic of Korea
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• v.3 no.2
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• pp.77-83
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• 2022

This study was conducted from March 2018 to December 2019 to identify bird diversity and environmental correlates within the Mulchat-oream wetlands in the Jeju Islands of South Korea. A total of 255 individual belonging to 37 species were recorded form Mulchat-oream. The observation produced a species diversity of 3.14, species richness of 6.54 and species evenness of 0.88 in 2018, and in 2019, the observed species diversity was 3.02, species richness was 6.56 and species evenness was 0.84. The highly dominant species are composed of Passeriformes. The absence of diverse submerged plants, deep water depth and isolated geographical locations makes difficult for aquatic birds to prefer this area, and this has resulted in the dominance of Passeriformes. The appearance of the birds was the lowest in the winter and highest during the summer. The analysis showed that the species richness and evenness increased with an increase in temperature and precipitation. However, the number of species appearing during Mulchat-oream significantly dependent on the temperature (P<0.001, df=2). To date, there has been little research on bird diversity together with environmental factors for the Hallasan National Park. This study shows the environmental factors and seasonal patterns that affect bird population.

• ALGAE
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• v.38 no.1
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• pp.39-55
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• 2023

Exploring mixotrophy of dinoflagellate species is critical to understanding red-tide dynamics and dinoflagellate evolution. Some species in the dinoflagellate genus Karenia have caused harmful algal blooms. Among 10 Karenia species, the mixotrophic ability of only two species, Karenia mikimotoi and Karenia brevis, has been investigated. These species have been revealed to be mixotrophic; however, the mixotrophy of the other species should be explored. Moreover, although K. mikimotoi was previously known to be mixotrophic, only a few potential prey species have been tested. We explored the mixotrophic ability of Karenia bicuneiformis, Karenia papilionacea, and Karenia selliformis and the prey spectrum of K. mikimotoi by incubating them with 16 potential prey species, including a cyanobacterium, diatom, prymnesiophyte, prasinophyte, raphidophyte, cryptophytes, and dinoflagellates. Cells of K. bicuneiformis, K. papilionacea, and K. selliformis did not feed on any tested potential prey species, indicating a lack of mixotrophy. The present study newly discovered that K. mikimotoi was able to feed on the common cryptophyte Teleaulax amphioxeia. The phylogenetic tree based on the large subunit ribosomal DNA showed that the mixotrophic species K. mikimotoi and K. brevis belonged to the same clade, but K. bicuneiformis, K. papilionacea, and K. selliformis were divided into different clades. Therefore, the presence or lack of a mixotrophic ability in this genus may be partially related to genetic characterizations. The results of this study suggest that Karenia species are not all mixotrophic, varying from the results of previous studies.

• Korean Journal of Environmental Biology
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• v.33 no.3
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• pp.314-329
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• 2015

The fish fauna was investigated from 2010 and 2013 at main stream and tributaries in the Seomjin River which has no estuary dike. The collected fishes were identified into 37,751 individuals of 107 species of 81 genera belonging to 41 families. Among the collected fishes the primary freshwater fishes were 57 species (Relative Abundance: 53.3%), the secondary fishes were 10 species (RA: 9.3%) and the marine fishes were 40 species (RA: 37.4%). The dominant species was Zacco platypus (RA: 28.7%), and the subdominant species was Zacco koreanus (RA: 15.0%). The endemic species were 21 species (RA: 31.3%). The endangered fishes were Acheilognathus somjinensis (Level I), Lampetra reissneri (Level II) and Microphysogobio koreensis (Level II). The exotic species were Carassius cuvieri, Lepomis macrochirus and Micropterus salmoides. We supposed that Odontobutis interrupta in the Seomjin River is translocated species.

• ALGAE
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• v.38 no.4
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• pp.265-281
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• 2023

Hypoxia can indeed impact the survival of protists, which play a crucial role in marine ecosystems. To better understand the protistan community structure and species that can thrive in hypoxic waters, we collected samples from both the surface and bottom waters during the hypoxic period in Jinhae and Masan Bays and the non-hypoxic period in Jinhae Bay. Subsequently, we utilized metabarcoding techniques to identify the protistan species. During hypoxia, with dissolved oxygen concentrations of 0.8 mg L^-1 in Jinhae Bay and 1.8 mg L^-1 in Masan Bay within the bottom waters, the phylum Dinoflagellata exhibited the highest amplicon sequence variants richness among the identified protist phyla. Following the Dinoflagellata, Ochrophyta and Ciliophora also displayed notable presence. In hypoxic waters of Jinhae and Masan Bays, we identified a total of 36 dinoflagellate species that exhibited various trophic modes. These included one autotrophic species, 14 mixotrophic species, 9 phototrophic species with undetermined trophic modes (either autotrophic or mixotrophic), 2 kleptoplastidic species, and 10 heterotrophic species. Furthermore, the hypoxic bottom water exhibited a greater number of heterotrophic dinoflagellate species compared to the non-hypoxic surface water within the same water column or the non-hypoxic bottom water. Therefore, feeding by mixotrophic and heterotrophic dinoflagellates may be partially responsible for their dominance in terms of the number of species surviving in hypoxic waters. This study not only introduces the initial documentation of 26 dinoflagellate species surviving in hypoxic conditions but also establishes a foundation for a more comprehensive understanding of the ecophysiology of dinoflagellates in hypoxic marine environments.

• 한국문화재보존과학회:학술대회논문집
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• 2003.03a
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• pp.28-28
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• 2003

• Proceedings of the Korean Society of Fisheries Technology Conference
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• 2002.05a
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• pp.612-612
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• 2002

• Journal of Life Science
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• v.13 no.4
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• pp.383-389
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• 2003

A cDNA (SeMIPS) encoding myo-inositol 1-phosphate synthase has been isolated from developing sesame (Sesamum indicum L. cv. Dan-Baek) seeds and its structure and function analyzed. The SeMIPS protein was highly homologous with those from plant species (88-94%), while a much lower degree of sequence homology (60%) was found with that of human. The functional domains commonly found in MIPS protein were identified and their amino acid residues were compared with each other. Northern blot indicated that the expression of the SeMIPS gene might be organ-specifically regulated. A complementation assay based on a yeast mutant system confirmed that the SeMIPS gene encodes a myo-inositol 1-phosphate synthase (MIPS) of sesame by showing functional expression of the SeMIPS cDNA in the yeast mutants containing the disrupted INO1 gene.