• Title/Summary/Keyword: SHANNON'S DIVERSITY

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Ecological Characteristics of Sub-Alpine Coniferous Forest on Banyabong in Mt. Jiri (지리산 반야봉 아고산 침엽수림의 생태적 특성)

  • Cho, Min-Gi;Chung, Jae-Min;Im, Hyo-In;Noh, Il;Kim, Tae-Woon;Kim, Chung-Yeol;Moon, Hyun-Shik
    • Journal of Climate Change Research
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    • v.7 no.4
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    • pp.465-476
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    • 2016
  • This study was conducted to elucidate the ecological characteristics of sub-alpine coniferous forest on Banyabong, Mt. Jiri. Soil pH was 4.20. The contents of organic matter, total N, available P and CEC were 14.15%, 0.43%, 10.1 ppm and $17.17cmol^+/kg$, respectively. Sub-alpine coniferous forest had a relatively soil moisture content with 22.9%. According to the results of importance value analysis, Picea jezoensis (42.7) and Abies koreana (34.0) for tree layer, Rhododendron schlippenbachii (25.5) for subtree layer and Tripterygium regelii (18.4) and Rhododendron mucronulatum (16.6) for shrub layer were high, respectively. Shannon's diversity ranged from 0.3560 to 1.050. Evenness and dominance ranged from 0.398 to 0.733 and 0.267 to 0.601, respectively. A. koreana population had a reverse J-shaped DBH distribution, while P. jezoensis population had a normal DBH distribution. Height growth according to DBH of A. koreana was higher than that of P. jezoensis, which indicate than A. koreana have more effective water use efficiency than P. jezoensis. Annual mean tree ring growth of P. jezoensis and A. koreana showed up 1.792, 1.652, 1.389 mm/yr and 2.081, 1.921, 1.576 mm/yr for small, middle and large diameter tree, respectively.

Phylogenetic Analysis of Bacterial Populations in a Tomato Rhizosphere Soil Treated with Chicken Feather Protein Hydrolysate (닭우모 단백질 가수분해물을 처리한 토마토 근권토양 내 세균군집의 계통 해석)

  • Kim, Se-Jong;Han, Song-Ih;Whang, Kyung-Sook
    • Korean Journal of Microbiology
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    • v.49 no.4
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    • pp.328-335
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    • 2013
  • As a result of conducting a cultural experiment of tomato using chicken feather protein hydrolysate (CPH) which was mass produced by keratin protein degrading bacterium Chryseobacterium sp. FBF-7 (KACC 91463P), we found that the stem and the root of tomato showed significant improvement in growth. For the purpose of phylogenic interpretation, a comparison was drawn between the effect of CPH, a treated CPH and untreated, on the changes of bacterial populations by 454 pyrosequencing based on 16S rRNA gene sequences. Tomato rhizosphere soil untreated with CPH (NCPH) showed 6.54 Shannon index from 3,281 sequence reads, and the rhizosphere soil treated with CPH (TCPH) showed 6.33 Shannon index from 2,167 sequence reads, displaying that it does not affect the diversity. Bacterial populations were composed of 19 phyla in the rhizosphere soil, and the phylum Proteobacteria occupied 40% of total bacterial populations. Bradyrhizobium, Agromonas, Nitrobacter, and Afipia (BANA group) which belong to Bradyrhizobiaceae were abundant and commonly detected in both the treated and untreated soils, suggesting the dominance of bacterial group in rhizosphere soil. The results obtained showed that CPH treatment does not affect the indigenous bacterial populations present in the rhizosphere soil.

Cometabolism degradation of lignin in sequencing batch biofilm reactors

  • Kuang, Faguo;Li, Yancheng;He, Lei;Xia, Yongqiu;Li, Shubai;Zhou, Jian
    • Environmental Engineering Research
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    • v.23 no.3
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    • pp.294-300
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    • 2018
  • Cometabolism technology was employed to degrade lignin wastewater in Sequencing Batch Biofilm Reactor. Cometabolic system (with glucose and lignin in inflow) and the control group (only lignin in inflow) were established to do a comparative study. In contrast with the control group, the average removal rates of lignin increased by 14.7% and total oarganic carbon increased by 32% in the cometabolic system with glucose as growth substrate, under the condition of 5 mg/L DO, $0.2kgCOD/(m^3{\cdot}d)$ lignin and glucose $1.0kgCOD/(m^3{\cdot}d)$. Functional groups of lignin are degraded effectively in cometabolic system proved by fourier transform infrared spectroscopy and Gas Chromatography-Mass Spectrometer, and the degradation products were amides (mainly including acetamide, N-ethylacetamide and N, N-diethylacetamide), alcohols (mainly including glycerol and ethylene glycol) and acids. Meanwhile, results of Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis showed great differences in microbial population richness between cometabolic system and the control group. The Margalef's richness index and Shannon-Wiener's diversity index of microorganism in cometabolic system were 3.075 and 2.61, respectively. The results showed that extra addition of glucose, with a concentration of 943 mg/L, was beneficial to lignin biodegradation in cometabolic system.

A Study on Vegetation Structure Changes between Natural land and Damaged land in Regional Ecological Network at Chungnam Province (충남 광역생태네트워크 자연녹지의 훼손지 식생구조 변화)

  • Song, Ju-Hyeon;Yun, Chung-Weon;Cho, Yong-Hyeon;Kang, Hee-Kyoung
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.20 no.2
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    • pp.13-35
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    • 2017
  • This study was carried out to analyze vegetation structure and change of the disturbed area in forest ecosystem(FE), riparian ecosystem(RE) and coastal ecosystem(CE) related to Regional Ecological Network at Chungnam province through constancy and dominance analysis, species diversity index, similarity index and canonical correlation analysis. Data were collected from April to October in 2015. As a result of constancy and dominance analysis of forest disturbed area, non-effective species(NES) was 30 species(17.0%), exported species(ES) was 98 species(55.7%) and imported species(IS) was 48 species(27.3%) among the total 176 species, respectively. In riparian disturbed area with total 139 species, there were 16 NES(11.5%), 98 ES(70.5%) and 25 IS(18.0%) respectively. In coastal disturbed area with 140 species, there were 20 NES(14.3%), 88 ES(62.9%) and 32 IS(22.9%) respectively. In all types of disturbed areas, the ratio of ES was higher than IS. As a result of species diversity, species richness and shannon's diversity index of disturbed area decreased in all kinds of crown strata such as tree, subtree, shrub and herb layer compared to the control area. As a result of similarity index, that of each type between control site and disturbed site was 0.374 in FE, 0.329 in CE and 0.259 in RE in the order. As a result of the CCA analysis, the number of present species, vine plants ratio and exported species ratio in disturbed area of FE and RE were decreased, and the naturalized plant ratio, imported species ratio and herb ratio were increased. But environmental factors of CE were not shown any clear tendency. In conclusion, many species occupied in control site disappeared into the disturbed area, and the naturalized plants and herb species were abundantly imported in the area. Therefore, it was considered that this study could be applied to the development of long-term and short-term ecological restoration techniques in view of vegetation changes.

The Relationship between the Dragonfly Diversity and the Environmental Factors in the Juam Wetland (주남습지에 서식하는 잠자리와 주변환경과의 관계)

  • Kim, Ji-Suk;Lee, Soo-Dong;Kim, Dong-Pil
    • Korean Journal of Environment and Ecology
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    • v.32 no.1
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    • pp.66-76
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    • 2018
  • This study surveyed the species and population of dragonflies in 20 study sites in the Junam wetland in May and July 2015 to investigate the relationship between the dragonflies and the inhabited environment. We measured the environmental factors such as the area of emergent plants, the area of floating and floating-leaved plants, the area of water surface, the area of water plants, and the nearby land-use type and analyzed the relationship to the dragonfly species, population, and diversity index. We found 757 dragonflies belonging to 21 species of 6 families. The area of floating and floating-leaved plants and the area of water surface affected the species diversity. The area of floating and floating-leaved plants and the area of surface water, in particular, showed the positive correlation with the species richness and the dominance value, respectively. The area of water surface showed the negative correlations with Shannon's diversity index and evenness. Among the type of surrounding land-uses, the dry fields and orchards showed significantly lower average species richness than wetlands. Among the species, Cercion calamorum and Crocothemis servilia were positively correlated with floating and floating-leaved plants. Cercion v-nigrum and Epophthalmia elegans were positively correlated with the area of water surface, and Ischnura asiatica and Ceriagrion nipponicum were negatively correlated. The recent uncontrolled proliferation of lotus colony in the Junam wetland is likely to affect greatly the species composition of dragonflies which have a close relationship with plant species.

Assessment of Rhizosphere Microbial Community Structure in Tomato Plants after Inoculation of Bacillus Species for Inducing Tolerance to Salinity (토마토에 염류 내성을 유도하는 바실러스 균주 처리 후 근권 미생물 군집 구조 연구)

  • Yoo, Sung-Je;Lee, Shin Ae;Weon, Hang-Yeon;Song, Jaekyeong;Sang, Mee Kyung
    • Korean Journal of Environmental Agriculture
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    • v.40 no.1
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    • pp.49-59
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    • 2021
  • BACKGROUND: Soil salinity causes reduction of crop productivity. Rhizosphere microbes have metabolic capabilities and ability to adaptation of plants to biotic and abiotic stresses. Plant growth-promoting bacteria (PGPB) could play a role as elicitors for inducing tolerance to stresses in plants by affecting resident microorganism in soil. This study was conducted to demonstrate the effect of selected strains on rhizosphere microbial community under salinity stress. METHODS AND RESULTS: The experiments were conducted in tomato plants in pots containing field soil. Bacterial suspension was inoculated into three-week-old tomato plants, one week after inoculation, and -1,000 kPa-balanced salinity stress was imposed. The physiological and biochemical attributes of plant under salt stress were monitored by evaluating pigment, malondialdehyde (MDA), proline, soil pH, electrical conductivity (EC) and ion concentrations. To demonstrate the effect of selected Bacillus strains on rhizosphere microbial community, soil microbial diversity and abundance were evaluated with Illumina MiSeq sequencing, and primer sets of 341F/805R and ITS3/ITS4 were used for bacterial and fungal communities, respectively. As a result, when the bacterial strains were inoculated and then salinity stress was imposed, the inoculation decreases the stress susceptibility including reduction in lipid peroxidation, enhanced pigmentation and proline accumulation which subsequently resulted in better plant growth. However, bacterial inoculations did not affect diversity (observed OTUs, ACE, Chao1 and Shannon) and structure (principle coordinate analysis) of microbial communities under salinity stress. Furthermore, relative abundance in microbial communities had no significant difference between bacterial treated- and untreated-soils under salinity stress. CONCLUSION: Inoculation of Bacillus strains could affect plant responses and soil pH of tomato plants under salinity stress, whereas microbial diversity and abundance had no significant difference by the bacterial treatments. These findings demonstrated that Bacillus strains could alleviate plant's salinity damages by regulating pigments, proline, and MDA contents without significant changes of microbial community in tomato plants, and can be used as effective biostimulators against salinity stress for sustainable agriculture.

Plant Community Structure of Abies holophylla Community from Sinseongam to Jungdaesa in Odaesan National Park (오대산국립공원 신성암~중대사 전나무림 식물군집구조 특성)

  • Kim, Dong-Wook;Han, Bong-Ho;Kim, Jong-Yup;Yeum, Jung-Hun
    • Korean Journal of Environment and Ecology
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    • v.29 no.6
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    • pp.895-906
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    • 2015
  • This study was carried out to the structure of plant community from Sinseongam to Jungdaesa in Odaesan National Park, furthermore, it seeks to curate the basic data for planning of the Abies holophylla's forest management in Odaesan National Park. In order to identify the current ecological environment, this study explored the actual vegetation as primary research and set to twenty plots(i.e. $400m^2$) for analysing detailed structure of plant communities. The research methodology was qualitative analysis, therefore it used TWINSPAN and DCA analysis tools. Especially, TWINSPAN performed well in several comparisons of classification techniques, DCA is one of the ordination technique showed that the plant communities. The plant community was analysed classification and ordination by TWINSPAN and DCA, moreover it was analysed the structure of plant community such as importance percentage of woody species, DBH class distribution, the index of diversity and rate of sample tree growth. The main vegetation was A. holophylla-Quercus mongolica forest and Deciduous broad-leaved forest in the communities where located in low altitude and valley, whereas main vegetation where located in high altitude and slope was Q. mongolica forest. The research site's plant communities were classified four groups. In all of communities, A. holophylla was dominant species in main canopy layer, furthermore, the three communities (community I, II, III) are growing up next generation of A. holophylla excluding community IV. The communities (community I, II, III) can be sustained current status which dominates the A. holophylla communities, simultaneously, there might be expanded the Deciduous broad-leaved communities by Carpinus cordata, Betula schmidtii and so on. While, it showed that the community IV tended to be weaken the forces of A. holophylla, therefore the community IV can be transferred to C. cordata-Deciduous broad-leaved communities in the future. The age of sample trees was 79~128(i.e. A. holophylla), 75~87(i.e. Pinus koraiensis) and 190 years(i.e. Ulmus davidiana var. japonica). The index of Shannon's Species diversity (H') were ranged from 0.3889 to 1.3332 in the communities.

Plant Community Structure of Pinus densiflora S. et Z. Forest in the Geumjeongsan (Mt.), Busan Metropolitan City (부산광역시 금정산 소나무림 식생구조 연구)

  • Lee, Kyoung-Jae;Kwak, Jeong-In;Kwak, Nam-Hyun;Jang, Jong-Soo
    • Korean Journal of Environment and Ecology
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    • v.27 no.4
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    • pp.462-472
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    • 2013
  • This study was carried out to provide a basic data for preservation of Pinus desiflora forest as cultural landscape forest by analyzing characteristics of plant community of P. desiflora forest in Geumjeongsan(mountatin) in Busan city. In order to analyze plant community of P. densiflora in Geumjeongsan, we set up 10 study plots inside and 8 plots outside of Geumjeongsansung(mountain fortress, hereinafter 'Sansung')(unit area: $400m^2$), a total of 18 plots. TWINSPAN analysis divided these 18 study plots into 6 communities which are Querqus serrata-P. desiflora community, P. desiflora community, P. desiflora-Q. serrata community, P. thunbergii-P. densiflora community, P. densiflora-P. thubergii-Q. acutissima community, and P. densiflora-Platycarya strobilacea community. Importance Percentage (I.P.) of each area and DBH class distribution of main species showed that P. densiflora community would succeed to Q. serrata community or C. tschonoskii community. Analysis on tree age found out that communities in the Sansung were 32~37 years old and those outside the Sansung were 44~57 years old. Shannon's species diversity index ranged from 0.4826 to 1.2499. Regarding correlation between species, P. densiflora had negative correlation with Styrax japonica. Based on abovementioned result we expected ecological succession from P. densiflora community to Q. serrata community inside of the Sansung. Outside the Sansung, succession from P. densiflora-P. thunbergii community to C. tschonoskii-Q. serrata community was expected. In order to manage P. densiflora forest as cultural landscape forest, Q. spp in the understory and shrub layer and deciduous broad-leaved arboreal trees should be managed. Tree crown management of deciduous broad-leaved trees in competition with P. desiflora, is also required.

Needle Characteristics and Genetic Variation of Pinus pumila Natural Population in Mt. Seorak (설악산 눈잣나무 천연집단의 침엽특성과 유전변이)

  • Song, Jeong-Ho;Lim, Hyo-In;Jang, Kyung-Hwan
    • Korean Journal of Plant Resources
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    • v.25 no.5
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    • pp.517-522
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    • 2012
  • This study was conducted to investigate the morphological and anatomical characteristics of needle and the genetic diversity of Pinus pumila Regel which is a unique and the southern peripheral population in South Korea. ANOVA test showed that there were significant differences among individuals within population in all 8 needle characteristics. Average characteristics of 66 individuals were 53.59 mm in needle length, 0.78 mm in needle width, 68.98 in needle index, 0.65 mm in needle thickness, 4.56 ea. in maximum stomata row, 3.80 ea. in minimum stomata row, 8.36 ea. in total stomata row and 1.71 ea. in resin canals, respectively. Resin canal per needle of this species ranged from one to three, depending on external type. Especially, arrangement types were 69.47% in two resin canals and 30.45% in a single resin canal. A total of 78 bands was generated from 9 selected I-SSR primers. The estimates of genetic variation were 61.5% in proportion of polymorphic bands (P), 1.698 in effective number of alleles ($A_e$), 0.388 in expected heterozygosity ($H_e$) and 0.567 in Shannon's information index (S.I.), respectively.

Application of Forest Bird Naturalness Index for Evaluating Biodiversity in National Parks in Korea (국립공원 생물다양성 평가를 위한 산림성 조류 자연성 지수 적용)

  • Choi, Sei-Woong;Jang, Jin;Chae, Hee-Young;Park, Jin-Young
    • Korean Journal of Ecology and Environment
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    • v.54 no.2
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    • pp.108-119
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    • 2021
  • We aimed to develop a naturalness index for forest-dwelling birds in four national parks in Korea and to simulate the effect of species loss on this naturalness index. Five bird specialists were asked to give 112 bird species a disturbance susceptibility score (DSS), and the naturalness index was calculated based on this. The 112 bird species represented 8 orders (Cuculiformes, Piciformes, Accipitriformes, Falconiformes, Columbiformes, Caprimulgiformes, Strigiformes, and Passeriformes). DSS was the highest for Terpsiphone atrocaudata and Pitta nympha, and lowest for Pica pica, Hypsipetes amaurotis, and Streptopelia orientalis. There was a significant negative relationship between a species' population number and its DSS. Among the four national parks, Mt. Songni had the highest naturalness index, followed by Mt. Wolak, Mt. Juwang, and Mt. Wolchul. We investigated the change in biodiversity indices under four scenarios, which assumed the extinction of species with less than 5 (Scenario 1), 10 (Scenario 2), 50 (Scenario 3), and 100 individuals (Scenario 4). The results showed that although all biodiversity indices decreased as the species loss increased, they all behaved differently. Fisher's alpha diversity decreased as the number of species proportionally decreased. There was almost no change in Shannon-Wiener H' index in Scenarios 1 and 2. The naturalness index showed increased sensitivity in Scenarios 1 and 4. Our future aims are to obtain the DSS for all forest-dwelling bird species, and to adopt the naturalness index to evaluate temporal and spatial changes in biodiversity.