• 한국작물학회지
• /
• 제50권2호
• /
• pp.131-141
• /
• 2005

Molecular-based genetic diversity for a set of 141 accessions of Korean barley cultivars and 24 accessions of foreign exotic cultivars were analyzed using random amplified polymorphic DNAs (RAPDs). Different level of genetic variability was observed with 30 random decamer primers in the Korean barley varieties and breeding lines which were preliminarily classified by morphological (hulled & hulless barley) and end-use (malting barley) and/or by the released periods. A total of 74 RAPD bands were scored, and the number of bands per primer varied from 1 to 7 with an average of 2.74. The hulled barley pool had one more marker genotype per primer than the hulless barley pool. The polymorphic information content (PIC) values based on the band pattern frequencies among genotypes varied depending on genetic pools where mean PICs of hulled, hulless and malting barleys were 0.62, 0.57, and 0.43, respectively. Certain genomic loci amplified by opR04, opF01, opB05, and opC13 were highly polymorphic with PIC>0.8. Patterns and temporal trends of genetic diversity assessed over the period from 1970s to 1990s had a tendency to increase, and in particular, this upward slant was quite clear and significant for the hulless barley pool. In the cluster analysis using genetic similarity matrix calculated from RAPD profiles, two major groups and several small subgroups were classified. Major grouping of materials was not affected by the presence of the husk but by their genetic background and the spike-row type. The validity of information on the genetic diversity and relationships between genotypes will have been reviewed to predict their yield potential.

• Asian-Australasian Journal of Animal Sciences
• /
• 제21권9호
• /
• pp.1233-1237
• /
• 2008

The genetic variability within and among three deer species in Malaysia, namely Cervus nippon (sika), Cervus timorensis (rusa) and Cervus unicolor (sambar), were evaluated using the RAPD technique. The DNA extracted from the buffy coat of 34 sika, 38 rusa and 9 sambar were analysed using ten primers that gave bands which showed good resolution. The primers generated 164 RAPD markers in total, and these ranged in size from 150 to 900 bp. The percent of polymorphism of the bands generated per primer ranged from 66.66-93.33% for rusa, 36.84-61.14% for sambar and 52.38-100% for sika. The overall percent polymorphism observed for the 164 RAPD markers was 99.39%. The results revealed five exclusive, monomorphic markers for sambar and one exclusive, monomorphic marker for sika; none was observed for rusa. However, these cannot be declared as markers for the identification of the species without analysis of more samples, populations and species. The means of within population genetic distances, based on Dice's and Jaccard's similarity indices, were similar for the rusa (0.383 and 0.542, respectively) and sika (0.397 and 0.558, respectively) populations with the sambar population being the least variable (0.194 and 0.323, respectively). The Dice based genetic distances within the species ranged from 0.194 to 0.397 and the genetic distances among the species were 0.791-0.911. The genetic distances based on Dice's and Jaccard's similarity indices between the rusa and sambar were 0.556 and 0.713, between the rusa and sika populations were 0.552 and 0.710, and between sambar and sika were 0.622 and 0.766, respectively.

• Fisheries and Aquatic Sciences
• /
• 제8권3호
• /
• pp.151-160
• /
• 2005

Genomic DNA samples isolated from Fenneropenaeus chinensis (fleshy prawn; FP) and Palaemon gravieri (Chinese ditch prawn; CDP) collected in the West Sea, off the Korean Peninsula, at Buan, were PCR-amplified repeatedly. The sizes of the DNA fragments generated by seven different primers varied from 50 bp to 1,600 bp. We identified 358 fragments for the FP species and 301 fragments for the CDP species. There were 18 polymorphic fragments (5.03$\%$) for the FP species and 12 (3.99$\%$) for the CDP species. In total, 66 common fragments (average of 9.4 fragments per primer) were observed for the FP species and 44 fragments (average of 6.3 fragments per primer) were observed for the CDP species. The numbers of specific fragments seen for the FP species and CDP species were 38 and 47, respectively. The complexity of the banding patterns varied dramatically between the primers and the two species. In the FP species, a specific fragment of approximately 1,200 bp generated by primer OPB-04 exhibited inter-individual-specific characteristics that were indicative of DNA polymorphisms. Moreover, in the CDP species, a major fragment of approximately 550 bp generated by primer OPB-20 was found to be specific for the CDP. The average bandsharing value between the two prawn species was 0.421$\pm$0.006, and ranged from 0.230 to 0.611. The dendrogram obtained using the data from the seven primers indicated seven genetic clusters: cluster 1, FLESHY 01, 02, 03, and 04; cluster 2, FLESHY 05, 06, and 07; cluster 3, FLESHY 08, 09, 10, and 11; cluster 4, DITCH 13, 14, 16, and 18; cluster 5, DITCH 12, 15, and 17; cluster 6, DITCH 19, 20, and 21; and cluster 7, DITCH 22. The genetic distance between the two prawn species ranged from 0.071 to 0.642. Thus, RAPD-PCR analysis revealed a significant genetic distance between the two prawn species. Using various arbitrary primers, RAPD-PCR may be applied to identify specific/polymorphic markers that are particular to a species and geographic population, and to define genetic diversity, polymorphisms, and similarities among shrimp species.

• 한국버섯학회지
• /
• 제13권2호
• /
• pp.135-138
• /
• 2015

갓색이 진한 장안5호와 기존에 다포자임의교배법으로 육성된 대가 길고 두꺼운 특징을 가지는 대장1호를 Di-mon교잡하여 '대장3호'를 육성하였다. 갓색은 진회색이며 갓모양은 깊은깔때기형이다. 대길이와 대굵기는 각각 77.4 mm와 13.5 mm로 춘추2호보다 두껍고 길었다. 초발이는 4-5일로 춘추2호와 비슷하였으며, 생육온도는 $14-17^{\circ}C$로 조금 낮은 편이었다. 춘추2호와 비교하여 수량은 13.9% 높았다. 생육시 습도가 높으면 춘추2호와 '대장3호'는 대표면이 회백색을 띄기도 하였다. URP-primer를 사용하여 RAPD를 하였으며, URP primer #03, #08, #10, #11에서 '대장3호'와 모균주, 그리고 다른 교잡균주들과 동일하지 않음을 알 수 있었다. 대조직의 물리적 특성은 깨짐성과 응집성은 춘추2호보다 컸으며, 강도와 경도, 씹힘성은 춘추2호보다 낮았으나 통계적 유의성을 나타내지 않았다.

• 한국잠사곤충학회지
• /
• 제38권2호
• /
• pp.81-92
• /
• 1996

1. 우리나라 재래뽕과 육성종 30품종에 대한 재배 생태학적 조사를 한 결과는 다음과 같다. 올뽕에 속한 것은 금상, 조상1호, 영변추우, 순천뽕, 당상3호, 대당상이고 당상6호, 황추우, 영변교, 당상4호, 당상5호는 늦뽕이었다. 가지끝마름률은 당상8호, 덕천뽕, 금상, 용천뽕, 영변추우, 수계뽕, 조선상, 강원3호, 조상1호이었다. 연간수량은 순천뽕, 당상7호, 황추우가 비교적 높았다. 그루당 가지수는 금상, 정선뽕, 순천뽕, 용천뽕이 많았고, 평균가지길이에서는 자산, 강원3호가 길었으며 절간장이 짧고 측지가 적은 품종으로서는 수원뽕, 영변교, 순청뽕, 당상5호, 당상6호이었다. 2. 우리나라 재래뽕 및 육성종 30품종과 장려뽕 15품종의 peroxidase, acid phosphatase, malate dehydrogenase, glutamate dehydrogenase isozymes을 분석한 결과 품종간 특이성이 나타난 효소종은 peroxidase 뿐이었으며, acid phosphatase는 희미한 band 출현상황만 확인할 수 있었을 뿐 품종간 특이성은 나타나지 않았다. Malate dehydrogenase와 glutamate dehydrogenase isozyme에 있어서는 어떠한 band도 출현하지 않았다. 3. 뽕품종을 RAPD 분석한 결과 상당히 많은 유전적 변이를 찾을 수 있었다. 다섯개의 random decamer primer를 사용하여 분석한 결과 PCR 증폭된 DNA의 단편은 5개에서부터 13개까지 primer에 따라 달랐으며, 이들간의 뚜렷한 구분은 없었다. 4. 가장 유연정도가 높은 품종들은 수원상 1호와 수원상 2호로서 이들의 유연정도는 90%정도였으며 여타 품종들과 가장 유연정도가 낮은 품종은 재래뽕들 중 은척뽕으로서 이는 60%정도에서 다른 품종들과 유연을 이루었다.

• The Plant Pathology Journal
• /
• 제23권2호
• /
• pp.45-50
• /
• 2007

Genetic diversity among selected isolates of Macrophomina phaseolina, a causal agent of charcoal rot (stalk rot) disease in sorghum was studied using PCR-RAPD markers. A set of ten isolates, from ten different rabi sorghum genotypes representing two traditional sorghum growing situations viz., Dharwad- a transitional high rainfall region and Bijapur- a semi-arid low rainfall region in South India. From a set of 40 random primers tested, amplicon profiles of 15 were reproducible. A total of 149 amplicon levels, with an average of 9.9 bands per primer, were available for analysis, of which 148 were polymorphic (99.3%). It was possible to discriminate all the isolates with any of the 15 primers employed. UPGMA clustering of data indicated that the isolates shared varied levels of genetic similarity within a range of 0.14 to 0.72 similarity coefficient index and it was suggestive that grouping of isolates was not related to sampling location in anyway. A high level of genetic heterogeneity of 0.28 was recorded among the isolates.

• 아시안잔디학회지
• /
• 제13권3호
• /
• pp.153-158
• /
• 1999

'Konwoo', bermudagrass[Cynodon dactylon (L) Pers.] (Patent registration no. 2000-724), a vegetative cultivar, was developed by the Dept. of Horticultural Science, Konkuk University, Seoul. 'Konwoo' was selected in 1997 among 20 lines collected from Korea, Japan, Tiwan, China, U. S. A, and Australia. 'Konwoo' morphologically similar to Tifway 419 was selected due to the erect type, short leaf length($1.3\pm$0.3cm), fine leaf($2.0\pm$0.5mm), rapid establishment and recoverage, many stolon number and high shoot density. When 'Konwoo' was compared to the four other bermudagrass lines at the DNA level using 54 PCR primers, it had the specific bands with primer No. 102, 275, 280, 295, 300, 739 by RAPD analysis.

• 한국어류학회지
• /
• 제17권3호
• /
• pp.173-186
• /
• 2005

한국과 대서양산 갈치 (Trichiurus lepturus) 2지리적 집단으로부터 genomic DNA를 분리 추출하였다. 선택된 8개의 RAPD primer를 이용하여 common, polymorphic 그리고 specific fragment를 얻어냈다. 2지역으로부터 primer간 banding patterns 의 복잡성이 두드러지게 나타났다. DNA fragment 의 분자적 크기는 150 bp에서부터 3,000 bp까지 커다란 차이를 나타내었다. 본 연구에서 한국산 갈치 집단에서는 947개의 fragment가 나타났고, 대서양산 갈치 집단에서는 642개의 fragment 가 확인되었다. 또한 한국산 집단에서는 148개의 specific fragment (15.6%) 가 확인되었으며, 대서양산 갈치집단에서는 61개의 specific fragment (9.5%)가 발생되었다. 한국산 갈치집단에서는 638개의 common fragment가 나타났으며, 이는 primer 당 평균적으로 79.8개의 fragment 로 확인되었다. 또한 대서양산 갈치집단에서는 429개의 common fragment 가 확인되었고, 평균해서 primer 당 53.6개의 common fragment 가 나타났다. 한국산 갈치집단과 대서양산 갈치집단의 polymorphic fragment는 각각 76개와 27개로 확인되었다. 모든 갈치시료의 평균적인 bandsharing value를 기초로 해서 한국산 갈치집단의 similarity matrix를 조사해 본 결과 0.784 로부터 0.922까지 나타났고, 대서양산 갈치집단의 값은 0.833로부터 0.990까지 확인되었다. 결과적으로 대서양산 갈치집단내 개체의 bandsharing value 평균값은 한국산 갈치집단의 평균값보다 높게 나타났다. 8개의 primer를 사용하여 얻어진 dendrogram은 cluster 1 (KOREAN 01~KOREAN 11) 및cluster 2 (ATLANTIC 12~ATLANTIC 22)와 같이 2개의 유전적 클러스터로 나뉘어졌다. 한국산 갈치집단내의 10번째 개체(KOREAN no. 10)와 11번째 개체(KOREAN no. 11) 사이가 가장 가까운 유전적 관계(genetic distance = 0.038)를 나타내었다. 궁극적으로 볼 때 한국산 갈치집단의 1번째(KOREAN no. 01)와 대서양산 갈치집단의 16번째(ATLANTIC no. 16) 개체 사이가 가장 먼 유전적 거리(genetic distance = 0.708)를 나타내었다.

• 한국산림과학회지
• /
• 제95권4호
• /
• pp.388-392
• /
• 2006

국내에 분포하는 리지나뿌리썩음병균(Rhizina undulata)의 생리적 특성 및 유전적 다양성을 밝히기 위하여, 소나무(Pinus densiflora) 및 곰솔(P. thunbergii) 림으로부터 분리한 13종의 리지나뿌리썩음병균 분리주를 공시하여 각 분리주들의 배양 특성 및 RAPD에 의한 유전적 다양성을 분석하였다. P. densiflora 및 P. thunbergii로부터 제조한 수용성 추출물 첨가배지에서의 각 분리주들의 균사생장 특성을 조사한 결과, 각 분리주들의 기주와 분리주들의 기주로 부터 추출한 수용성 추출물 배지에서의 균사생장량 간에는 상관관계를 발견할 수 없었다. 한편, 12종의 random primer를 사용하여 R. undulata 분리주들의 genomic DNA의 random amplified polymorphic DNA(RAPD)에 의한 유전적 다양성을 분석한 결과, 국내 분리주들의 RAPD profile은 모두 동일하였다. 그러나, 국내 분리주들의 RAPD profile과 일본 분리주와는 다소 차이를 나타내었는데 즉, RAPD profile의 phylogenetic tree 분석 결과, 국내 분리주들과 일본분리주와는 88%의 상동성을 나타내었다.

• 한국식물병리학회:학술대회논문집
• /
• 한국식물병리학회 2003년도 정기총회 및 추계학술발표회
• /
• pp.116.1-116
• /
• 2003

Fusarium oxysporum f. sp. fragariae is a fungal pathogen causing wilt disease on strawberry. The RAPD and RFLP of IGS region of rDNA were used to identify genetic affinity among 22 isolates of F. oxysporum f. sp. fagariae obtained from various location of major strawberry cultivating areas in Korea. Approximately 2.6kb DNA fragment was amplified with primer CNS1 and CNL12, and polymorphisms were observed with Avail and HinfI. A dendrogram was constructed using the UPGMA for cluster analysis. Eight distinct groups were clustered based on the banding pattern obtained from RAPD and rDNA RFLP. There was high level genetic variation among Korean isolates of Fusarium of sporum f. sp. fragariae.