• 대한화장품학회지
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• 제31권1호
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• pp.13-16
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• 2005

미백 물질 탐색 방법으로, MC1R 발현 인자인 Mitf (microrhthalmia transcription factor)를 이용한 protein chip을 적용하였다. MC1R promoter와 Mitf 결합의 저해 인자로써, DNA 상의 결합 부위인 E-box (CATGTG)와 유사한 서열을 가진 oligomer를 사용하였고, E-box 내외부의 서열 변화에 따른 저해율 또한 측정하였다. 그 결과 DNA-Mitf 결합 저해율에 있어서, E-box 서열 내 변화를 준 oligonucleotide 경쟁자는, E-box 이외의 서열 변화를 준 경쟁자보다 낮은 수치를 보였다.

• 생명과학회지
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• 제13권1호
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• pp.99-104
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• 2003

Aromatic compounds are of major concern among environmental pollutants due to their toxicity and persistence. To monitor aromatic compounds in a real time with a better sensitivity, a new method of SPR (surface plasmon resonance) based on DNA chip (Biacore 3000) was developed here. It is thought that CapR regulatory protein as a complex with phenol, could bind to their corresponding promoter, Po. Biotinylated DNA oligomers for the promoter was synthesized by PCR and coupled onto streptoavidin-linked CM5-chip. CapR regulatory proteins were purified after cloning their genes in pET21a (+) vector and expressing proteins. The interaction was assessed by the system where the regulatory proteins flowed with or without phenol through the cells of DNA chip. CapR regulatory protein even in the presence of phenol had no response to its promoter, Po, suggesting that other factor(s) might be required for the activation of Po promoter. The present work reveals a promising possibility of the SPR-based DNA chip in monitoring specific environmental pollutants in a real time.

• 한국동물위생학회지
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• 제30권2호
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• pp.205-209
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• 2007

A protein chip based on surface plasmon resonance (SPR) imaging was developed for measuring classical swine fever virus (CSFV) antibody using a recombinant gp55 protein as an antigen. The diagnostic potential of SPR imaging for detecting antibodies to the CSFV gp55 protein was compared with that of a enzyme -linked immunosorbent assay (ELISA) using 70 pig sera. There was a strong positive correlation between the SPR imaging and ELISA (n=70, r=0.916, p<0.01). Therefore, the SPR imaging, which is a label-free and high-through put method, is expected to be a valuable tool in the serodiagnosis of CSFV.

• 인재니움
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• 제8권1호
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• pp.37-42
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• 2001

• BMB Reports
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• 제51권10호
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• pp.484-485
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• 2018

Receptor-interacting protein kinase-3 (RIP3 or RIPK3) is a serine-threonine kinase largely essential for necroptotic cell death; it also plays a role in some inflammatory diseases. High levels of RIP3 are likely sufficient to activate necroptotic and inflammatory pathways downstream of RIP3 in the absence of an upstream stimulus. For example, we have previously detected high levels or RIP3 in the skin of Toxic Epidermal Necrolysis patients; this correlates with increased phosphorylation of MLKL found in these patients. We have long surmised that there are molecular mechanisms to prevent anomalous activity of the RIP3 protein, and so prevent undesirable cell death and inflammatory effects when inappropriately activated. Recent discovery that Carboxyl terminus of Hsp 70-Interacting Protein (CHIP) could mediate ubiquitylation- and lysosome-dependent RIP3 degradation provides a potential protein that has this capacity. However, while screening for RIP3-binding proteins, we discovered that pellino E3 ubiquitin protein ligase 1 (PELI1) also interacts directly with RIP3 protein; further investigation in this study revealed that PELI1 also targets RIP3 for proteasome-dependent degradation. Interestingly, unlike CHIP, which targets RIP3 more generally, PELI1 preferentially targets kinase active RIP3 that has been phosphorylated on T182, subsequently leading to RIP3 degradation.

• 한국환경성돌연변이발암원학회지
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• 제22권1호
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• pp.54-59
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• 2002

We have used cDNA microarray hybridization to identify gene regulated in response to gamma-irradiation in U-937 cell. The cDNA-chip was composed entirely of 1,000 human cancer related gene including apoptosis and angiogenesis etc. In gamma-irradiated U-937 cell, highly charged protein, ribosomal protein L32, four and a half LIM domains 3, lipocalin 2 (oncogene 24p3) and interleukin 15, ataxia telangiectasia mutated (includes complementation groups A, C and D) genes showed increased level of its transcription, and cell division cycle 25A, dihydrofolate reductase, topoisomerase (DNA) II beta(180kD), kinase suppressor of ras and strarigin genes showed reduced level of its transcription compared to untreated U-937 cell. The significant change of level of transcription was not found in well-known ionizing radiation(IR)-responsive gene, such as transcription factor TP53 and p53 related gene, except ataxia telangiectasia mutated gene.

• 한국전기전자재료학회논문지
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• 제17권4호
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• pp.404-409
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• 2004

We fabricated photo-sensor for fluorescence detection in LOC. LOC is high throughput screening system. Our LOC screens biochemical reaction of protein using the immunoassay, and converts biochemical reaction into electrical signal using LIF(Laser Induced Fluorescence) detection method. Protein is labeled with rhodamine intercalating dye and finger PIN photodiode is used as photo-sensor We measured fluorescence emission of rhodamine dye and analyzed tendency of fluorescence detection, according to photo-sensor size, light intensity, and rhodamine concentration. Detection current was almost linearly proportional to two parameters, intensity and concentration, and was inversely proportional to photo-sensor size. Integrated LOC consists of optical-filter deposited photo-sensor and PDMS microchannel detected 50 (pg/${mu}ell$) rhodamine. For integrated LOC including light source, we used green LED as the light source and measured emitted fluorescence.

• 한국콘텐츠학회논문지
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• 제7권1호
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• pp.40-47
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• 2007

단백질 매크로 어레이 영상에서 단백질 칩 각각의 특징을 규명하는 것은 중요한 것이다. 사람의 시각에 의한 판단은 많은 단백질 칩 영상을 실험할 경우, 장시간의 관찰과 그로 인한 오류가 발생할 수 있다. 따라서 시뮬레이터를 통한 특성 파악이 필요하게 되고, 매크로 어레이 스캔 영상에 대해 특성 분석을 할 경우 효율을 극대화할 수 있다. 형광 스캔 영상에 있어서, 각 셀의 반응도는 컬러 영상의 R, G, B 분포에 의존하여 왔다. 그러나 중첩되는 영상의 경우는 한쪽으로 구분하여 분류하기가 어렵다. 본 논문은 이러한 단점을 극복하기 위해 사용자가 원하는 색상에 대한 퍼지 측도 값을 적용한 퍼지 적분 값으로서 단백질 칩의 반응색상을 구분 지었다. Scan Array 5000에 의해 구성된 매크로 어레이 형광 영상들에 대해 실험한 결과, 퍼지 적분을 사용한 제안 방법이 모호한 색상에 대해 결정을 내릴 수 있는 요소가 됨을 보여 주었다.

• 한국정보통신학회논문지
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• 제13권7호
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• pp.1475-1482
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• 2009

본 논문에서는 최적의 Lab-on-a-Chip을 설계하기 위해 나선형 마이크로 채널에서 등속영동 프로틴 분리를 수행하는 컴퓨터 시뮬레이션을 이차원 유한 요소법을 이용하여 개발하였다. 개발한 이차원 ITP 모델은 다섯 가지 요소로 구성되며 Leader로서 염산을, Terminator로서 카르로산, 두 개의 프로틴 중 프로틴 A는 아세트산, 프로틴 B는 벤조산, 그리고 BE(Background Electrolyte)로서 히스티딘을 사용하였다. 컴퓨터 모델은 다섯 가지 구성 요소들에 대한 질량 보존 방정식과 전위에 대한 전하 보존 방정식, 그리고 pH 계산은 전기적 중성 조건식에 기반하고 있다. 제안된 이차원 공간 ITP 모델의 검증을 위해 제안한 모델의 결과와 Bohuslav Gas 그룹에서 개발한 Simu 5의 결과를 비교하였다. 시뮬레이션 결과 일차원 채널에서 두 모델이 매우 유사한 일치를 보임으로 제안한 모델의 정확성을 검증해 주었다. 이차원 프로틴 분리는 Lab-on-a-Chip 설계를 위한 이차원 곡선 채널에서 수행되어 채널 형상이 프로틴 포커싱분포(dispersions)의 변화를 초래함을 알 수 있었다.

• Bioinformatics and Biosystems
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• 제2권2호
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• pp.62-65
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• 2007

We present here the strategy of data integration for inference of genetic regulatory modules. First, we construct all possible combinations of regulators of genes using chromatin-immunoprecipitation(ChIP)-chip data. Second, hierarchical clustering method is employed to analyze mRNA expression profiles. Third, integration method is applied to both of the data. Finally, we construct a genetic regulatory module which is involved in the function of ribosomal protein synthesis.