• 한국콘텐츠학회논문지
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• 제8권6호
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• pp.74-81
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• 2008

단백질 상호작용 네트워크는 허브(hub)라 할 수 있는 상호작용 수가 많은 소수의 단백질과 상호작용수가 적은 다수의 단백질들로 구성된다. 최근 들어 여러 연구들에서 허브 단백질이 비 허브(non-hub) 단백질보다 상호작용 네트워크에 필수적인 단백질일 가능성이 높다고 보고되고 있다. 이러한 현상을 중심-치명 룰(centrality-lethality rule)이라 하는데, 이는 복잡계 네트워크에서 허브단백질의 중요성 및 네트워크 구조의 중요성을 설명하기 위한 방법으로 폭넓게 신뢰받고 있다. 이에 본 논문에서는 중심-치명 룰이 항상 옳게 적용되는지를 확인하기 위해 Uetz, Ito, MIPS, DIP, SGD, BioGRID와 같은 효모에 관한 공개된 모든 단백질 상호작용 데이터베이스들을 분석하였다. 흥미롭게도, 상호작용 데이터가 적은 데이터베이스들(Uetz, Ito, DIP)에서는 중심-치명 룰을 잘 나타냈지만 상호작용 데이터가 대용량인 데이터 베이스들(SGD, BioGRID)에서는 중심-치명 룰이 잘 맞지 않음을 확인하였다. 이에 따라 SGD와 BioGRID 데이터베이스로 부터 얻은 상호작용 네트워크의 특징을 분석하고 DIP 데이터베이스의 상호작용 네트워크와 비교하였다.

• Journal of Nutrition and Health
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• 제37권2호
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• pp.100-107
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• 2004

This study was performed to evaluate the effect of dietary protein source and sulfur amino acid content on bone metabolism in ra. Thirty male rats (body weight 145$\pm$2g) were divided into three groups. The rats in the first group were fed on casein 20% diet as animal protein source and those in the second group were fed on soy 20% diet as plant protein source. Sulfur amino acid ratio of these group was 1.07:1. The rats in the third group were fed on soy 20% diet and the sulfur amino acid were supplemented with the amount contained as much in the soy 20% diet. All rats were fed on experimental diet and deionized water ad libitum for 9 weeks, The total body, spine, femur bone mineral density and bone mineral content were measured using Dual Energy X-ray Absorptiometry Calcium, phosphate, pyridinoline, creatinine in urine and calcium, phosphate, alkaline phosphatase, osteocalcin in serum were measured. During the experimental period, plant protein (soy protein) group had a lower urinary Ca excretion, urine pyridinoline ＆ crosslinks value and had a higher Ca efficiency in total bone and femur bone mineral density than animal protein (casein) group. There were no significant differences in serum calcium, phosphate, alkaline phosphatase and osteocalcin among the three groups of the rats. The findings from this study demonstrated that plant protein (soy protein) is beneficial of bone mineral density because it had a higher Ca efficiency in total bone and femur bone mineral density than animal protein (casein). However, the supplementation of sulfur amino acid on soy results were consistent with prior studies that dietary sulfur amino acid load had a negative effect on calcium balance. The rats fed sulfur amino acid supplementation diet increased urinary calcium excretion and decreased calcium efficiency for total and femur mineral density. Therefore, dietary protein source and sulfur amino acid content influence bone metabolism. (Korean J Nutrition 37(2): 100-107, 2004)

• 한국수산과학회지
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• 제28권5호
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• pp.599-606
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• 1995

포말 분리관에 단백질 용액을 일정하게 공급하여 분리 실험을 수행하며 초기 단백질 농도, 공탑 공기유속, 온도와 pH 등의 영향에 따른 포말 분리관의 단백질 분리특성을 연구한 결과, 액본체 단백질의 약 65% 이상이 약 10min이내에 제거되는 효과적인 분리특성을 나타내어 포말분리법은 양어장 순환수중의 주된 유기성분인 단백질을 분리하기 위한 매우 효과적인 방법이었다. 액본체 중의 단백질의 초기농도가 증가함에 따라 단백질 제거속도는 일정 농도 이하의 조건에서는 직선적으로 증가하다가 일정한 값을 유지하여 단백질 제거속도는 Langmuir 흡착형태를 나타내었으며, 제거속도는 공탑 공기유속에 대해서는 직선 관계를 보였다. 본 실험조건 범위 내에서는 단백질 제거에 있어 온도 및 pH의 영향은 그다지 크지 않는 것으로 나타났으며, 실험결과를 검토한 결과 이론식은 타당하였다

• Asian Pacific Journal of Cancer Prevention
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• 제15권13호
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• pp.5325-5330
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• 2014

Background: Chronic myelocytic leukemia is a disease that threatens both adults and children. Great progress has been achieved in treatment but protein-protein interaction networks underlining chronic myelocytic leukemia are less known. Objective: To develop a protein-protein interaction network for chronic myelocytic leukemia based on gene expression and to predict biological pathways underlying molecular complexes in the network. Materials and Methods: Genes involved in chronic myelocytic leukemia were selected from OMIM database. Literature mining was performed by Agilent Literature Search plugin and a protein-protein interaction network of chronic myelocytic leukemia was established by Cytoscape. The molecular complexes in the network were detected by Clusterviz plugin and pathway enrichment of molecular complexes were performed by DAVID online. Results and Discussion: There are seventy-nine chronic myelocytic leukemia genes in the Mendelian Inheritance In Man Database. The protein-protein interaction network of chronic myelocytic leukemia contained 638 nodes, 1830 edges and perhaps 5 molecular complexes. Among them, complex 1 is involved in pathways that are related to cytokine secretion, cytokine-receptor binding, cytokine receptor signaling, while complex 3 is related to biological behavior of tumors which can provide the bioinformatic foundation for further understanding the mechanisms of chronic myelocytic leukemia.

• 한국동물학회지
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• 제31권3호
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• pp.207-217
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• 1988

배양 계배 근원세포의 분화에 미치는 계배추출물의 영향을 조사하고, 이 추출물로부터 근워세포의 분화에 필수적인 myotrophic protein(MP)를 순수분리하였다. 그리고 이 MP는 철 운반 단백질인 trsnaferrin과 동일하거나 또는 대단히 유사한 단백질임을 알 수 있었다. 이 단백질은 철을 근원세포에 공급하고 이 철근이 근원세포의 융합에 필수적인 역할을 하는 것으로 보인다. 또 계배추출물속에는 이 MP이외에 근원세포의 융합을 억제하는, 그리고 열에 비교적 안정한 단백질이 존재하다고 생각된다. 이 MP의 수용체(receptor)분석을 한 결과, 수용체의 수는 근원세포가 융합을 하고 나면 급속히 감소하는 것으로 나타났다. 그리고 근원세포의 내로의 철과 MP의 수송에는 약 10분이 소요되는 것으로 나타났다.

• 한국동물위생학회지
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• 제27권4호
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• pp.355-369
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• 2004

The equine herpesvirus type 1 (EHV-1) immediate-early (IE) protein is a potent transactivator responsible for the activation of both early and late genes during the course of infection and is comprised of discrete functional domains that mediate its many functions. Interaction between trans activators such as the IE protein and various components of the RNA polymerase II transcription initiation machinery has been demonstrated to be critical for transactivation. In the present report, it is addressed the hypothesis that the IE protein interacts with various components of transcription machinery to mediate transactivation of target viral genes. In these studies, it is demonstrated that in vitro transcribed and translated IE protein interacts with TFIIB-agarose conjugate but not with TFIID-agarose conjugate. Additional immunoprecipitation studies using nuclear extracts derived from EHV-1 infected RK-13 cells confirmed that the IE protein interacts strongly with TFIIB, but fails to interact with TFIID. IR2, a truncated form of the IE protein lacking the potent transactivation domain and involved in the down-regulation of the IE gene, also interacted with TFIIB but not with TFIID. Studies were also performed to ascertain if particular TBP-associated factors (TAFs) could mediate IE or IR2 binding to TFIID. In vitro transcribed and translated TAF250 added to nuclear extracts generated from EHV-1 infected cells also failed to mediate an interaction between the IE protein or the IR2 protein and TFIID. This study demonstrated that the IE protein mediates transactivation of target viral genes by a mechanism that involves TFIIB. This is in contrast to mechanisms that have been proposed for both the herpes simplex virus ICP4 and VP16 protein which have been proposed to transactivate viral genes through interactions involving both TFIIB and TFIID. This study also intimates that IR2 mediate its repressive effects during the course of EHV-1 infection by a mechanism that involves sequestration of various transcription factors.

• Biotechnology and Bioprocess Engineering:BBE
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• 제9권4호
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• pp.241-244
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• 2004

Protein A molecular thin film was fabricated as a platform of antibody-based biosensor. For the immobilization of the protein A thin film, a viologen multilayer was built up using the Langmuir-Blodgett (LB) technique, and then, protein A was adsorbed on the viologen LB film by an electrostatic interaction force, which was formed as a hetero-film structure. For the deposition of viologen, surface pressure area ($\pi$-A) isotherm was investigated. The fabricated protein A-viologen hetero LB film was investigated using atomic force microscopy (AFM). Using the developed molecular film, antibody immobilization and fluorescence measurement was carried out.

• Journal of Microbiology and Biotechnology
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• 제10권6호
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• pp.805-810
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• 2000

An antifungal protein antagonistic to the rice blast fungus, Pyricularia oryzae was purified from Paenibacillus macerans PM-1 by ammonium sulfate fractionation, Q Sepharose Fast Flow column chromatography, Phenyl Sepharose CL-4B column chromatography and Superose 12 gen filtration. An apparent molecular mass of the purified antifungal protein was determined as 8 kDa by SDS-PAGE and 9 kDa by analytical gel filtration, respectively, suggesting that the purified protein is a monomer. The antifungal protein was stable at pH range from 7-12 and up to $100^{\circ}C$. The protein was also stable at 0.1-1% Tween 20 and Triton X-100. The N-terminal amino acid sequence of the antifungal protein was Thr-Glu-Leu-Pro-Leu-Gly-Ile-Val-Met-Asp-Lys-Tyr-Thr-Asp-Ala-Phe-Lys-Phe-Asp-Met-Phe. Comparison of the determined sequence with other peptide and DNA sequences did not reveal homology at all. Therefore, the purified antifungal protein was speculated to be a novel protein. The condidial germination in vitro of P. oryzae KJ301:93-39 by the purified protein ($5.9{\mu} g/ml$) was limited to $9{\pm}3.2%$ only, compared with $69{\pm}2.4%$ of the control. Ungerminated conidia were swollen at basa and mid cell by the purified protein. In vivo bioassay for inhibition of conidial germination of P. oryzae KJ 301, one of the most predominating racesin Korea. the purified protein ($5.9{\mu} g/ml$)strongly inhibited the conidial germination. The conidia, even though germinated, could not develop any further to produce appressoria efficiently.

• 한국수산과학회지
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• 제46권4호
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• pp.377-383
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• 2013

We ran a feeding trial to determine optimal dietary protein and lipid levels for growth of juvenile long snout bullhead Leiocassis longirostris Gunther. Eight experimental diets (P20L7, P20L14, P30L7, P30L14, P40L7, P40L14, P50L7 and P50L14) were formulated to contain 20%, 30%, 40% or 50% protein combined with either 7% or 14% lipid. Three replicate groups of fish (mean mass: 3.9 g/fish) were fed one of the experimental diets ad libitum for 8 weeks. Survival of fish fed the P20L14 diet was lower than that of fish fed the P40L14, P50L7 and P50L14 diets. Growth of fish fed diets containing 7% lipid increased with increasing protein level (up to 50% protein); growth of fish fed diets containing 14% lipid increased with increasing protein level (up to 30% protein). The feed efficiency of fish fed a diet with 50% protein and 7% lipid was higher than that of other groups. Whole body moisture and lipid contents were affected by dietary lipid level but not by dietary protein level. The crude lipid contents of fish fed 14% lipid diets were higher than those fed 7% lipid diets across all protein levels (other than the 50% level). Thus, under our experimental conditions, an increase in dietary protein level improved growth and feed efficiency of fish; a diet containing 50% protein with 7% lipid was optimal for growth and effective feed utilization in juvenile long snout bullhead.

• 대한바이러스학회지
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• 제29권4호
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• pp.221-233
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• 1999

Prospect Hill Virus (PHV) is the well known serotype of hantavirus, a newly established genus in family Bunyaviridae. Extensive studies have upheld the original view of PHV genetics with three genes such as nucleocapsid (N) protein, envelope proteins (G1, G2) and RNA dependent RNA polymerase. In this study, we report the existence of additional gene that is encoded in an overlapping reading frame of the N protein gene within S genome segment of PHV. This gene is expected to encode a nonstructural small (NSs) protein and it seems to be only found in PHV infected cell. The presence and synthesis of NSs protein could be demonstrated in the cell infected with PHV using anti-peptide sera specific to the predicted amino acid sequence deduced from the second open reading frame. Ribosomal synthesis of this protein appears to occur at AUG codon at the 83rd base of S genome segment, downstream of N protein initiation codon. This protein is small in size (10.4 KDa) and highly basic in nature. The expression strategy of NSs protein appears that a signal mRNA is used to translate both N and NSs protein in PHV infected cell. 10 KDa protein in virus infected cell lysates can bind to mimic dsRNA. This fact strongly suggests that NSs protein may be involved in virus replication on late phase of viral life cycle.