• Title/Summary/Keyword: Principal components analysis (PCA)

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Phenotypic Characterization and Multivariate Analysis to Explain Body Conformation in Lesser Known Buffalo (Bubalus bubalis) from North India

  • Vohra, V.;Niranjan, S.K.;Mishra, A.K.;Jamuna, V.;Chopra, A.;Sharma, Neelesh;Jeong, Dong Kee
    • Asian-Australasian Journal of Animal Sciences
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    • v.28 no.3
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    • pp.311-317
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    • 2015
  • Phenotypic characterization and body biometric in 13 traits (height at withers, body length, chest girth, paunch girth, ear length, tail length, length of tail up to switch, face length, face width, horn length, circumference of horn at base, distances between pin bone and hip bone) were recorded in 233 adult Gojri buffaloes from Punjab and Himachal Pradesh states of India. Traits were analysed by using varimax rotated principal component analysis (PCA) with Kaiser Normalization to explain body conformation. PCA revealed four components which explained about 70.9% of the total variation. First component described the general body conformation and explained 31.5% of total variation. It was represented by significant positive high loading of height at wither, body length, heart girth, face length and face width. The communality ranged from 0.83 (hip bone distance) to 0.45 (horn length) and unique factors ranged from 0.16 to 0.55 for all these 13 different biometric traits. Present study suggests that first principal component can be used in the evaluation and comparison of body conformation in buffaloes and thus provides an opportunity to distinguish between early and late maturing to adult, based on a small group of biometric traits to explain body conformation in adult buffaloes.

Principal Component Analysis Based Ecosystem Differences between South and North Korea Using Multivariate Spatial Environmental Variables (다변량 환경 공간변수 주성분 분석을 통한 남·북 생태계 차이)

  • Yu, Jaeshim;Kim, Kyoungmin
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.18 no.4
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    • pp.15-27
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    • 2015
  • The objectives of this study are to analyze the quantitative ecological principal components of Korean Peninsula using the multivariate spatial environmental datasets and to compare the ecological difference between South and North Korea. Ecological maps with GIS(Geographical Information System) are constructed by PCA(Principal Component Analysis) based on seventeen raster(cell based) variables at 1km resolution. Ecological differences between South and North Korea are extracted by Factor Analysis using ecosystem maps masked from Korean ones. Spatial data include SRTM(Shuttle Radar Topography Mission), Temperature, Precipitation, SWC(Soil Water Content), fPAR(Fraction of Photosynthetically Active Radiation) representing for a productivity, and SR(Solar Radiation), which all cover Korean peninsula. When it performed PCA, the first three scores were assigned to red, green, and blue color. This color triplet indicates the relative mixture of the seventeen environmental conditions inside each ecological region. The first red one represents for 'physiographic conditions' worked by high elevation and solar radiation and low temperature. The second green one stands for 'seasonality' caused by seasonal variations of temperature, precipitation, and productivity. The third blue one means 'wetness condition' worked by high value such as precipitation and soil water contents. FA extraction shows that South Korea has relatively warm and humid ecosystem affected by high temperature, precipitation, and soil water contents whereas North Korea has relatively cold and dry ecosystem due to the high elevation, low temperature and precipitation. Results would be useful at environmental planning on inaccessible land of North Korea.

Reconstruction of Partially Occluded Facial Image Utilizing KPCA-based Denoising Method (KPCA 기반 노이즈 제거 기법을 이용한 부분 손상된 얼굴 영상의 복원)

  • Kang Daesung;Kim Jongho;Park Jooyoung
    • Proceedings of the Korean Institute of Intelligent Systems Conference
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    • 2005.04a
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    • pp.247-250
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    • 2005
  • In numerous occasions, there is need to reconstruct partially occluded facial image. Typical examples include the recognition of criminals whose facial images are captured by surveillance cameras- ln such cases a significant part of the face is occluded making the process of identification extremely difficult, both for automatic face recognition systems and human observers. To overcome these difficulties, we consider the application of Kernel PCA-based denoising method to partially occluded facial image in this paper.

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Comparison of Pyrolysis Patterns of Different Tobacco Leaves by Double-Shot Pyrolysis-GC/MSD Method

  • Lee, Chang-Gook;Lee, Jae-Gon;Jang, Hee-Jin;Kwon, Young-Ju;Lee, Jang-Mi;Kwag, Jae-Jin;Kim, Soo-Ho;Sung, Yong-Joo;Shin, Chang-Ho;Kim, Kun-Soo;Rhee, Moon-Soo
    • Journal of the Korean Society of Tobacco Science
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    • v.30 no.2
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    • pp.94-102
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    • 2008
  • In this paper, we describe our study on the characterization of tobacco leaves by their pyrolysis patterns. Two kinds of tobacco leaves were pyrolyzed and analyzed by Double-Shot Pyrolysis-Gas Chromatography/Mass Spectroscopy (Py-GC/MS) methods. Three grades of Korean flue-cured tobacco leafsuch as B1O, AB3O, CD3L and burley tobacco leaves such as B1T, AB3T, CD3W were pyrolyzed with six discrete but stepwise heating temperature ranges, those are from 100$^{\circ}C$ to 150$^{\circ}C$, 150$^{\circ}C$ to 200$^{\circ}C$, 200$^{\circ}C$ to 250$^{\circ}C$, 250$^{\circ}C$ to 300$^{\circ}C$, 300$^{\circ}C$ to 350$^{\circ}C$ and finally from 350$^{\circ}C$ to 400$^{\circ}C$. Using the resultant 52 pyrolytic components identified in the programs as components, principal component analysis (PCA) showed statistical classification between flue-cured and burley tobacco lamina. Among six pyrolysis temperature ranges, the best discrimination was achieved at the temperature range from 250$^{\circ}C$ to 300$^{\circ}C$ and from 300$^{\circ}C$ to 350$^{\circ}C$.

Performance Improvement of Automatic Basal Cell Carcinoma Detection Using Half Hanning Window (Half Hanning 윈도우 전처리를 통한 기저 세포암 자동 검출 성능 개선)

  • Park, Aa-Ron;Baek, Seong-Joong;Min, So-Hee;You, Hong-Yoen;Kim, Jin-Young;Hong, Sung-Hoon
    • The Journal of the Korea Contents Association
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    • v.6 no.12
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    • pp.105-112
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    • 2006
  • In this study, we propose a simple preprocessing method for classification of basal cell carcinoma (BCC), which is one of the most common skin cancer. The preprocessing step consists of data clipping with a half Hanning window and dimension reduction with principal components analysis (PCA). The application of the half Hanning window deemphasizes the peak near $1650cm^{-1}$ and improves classification performance by lowering the false negative ratio. Classification results with various classifiers are presented to show the effectiveness of the proposed method. The classifiers include maximum a posteriori probability (MAP), k-nearest neighbor (KNN), probabilistic neural network (PNN), multilayer perceptron(MLP), support vector machine (SVM) and minimum squared error (MSE) classification. Classification results with KNN involving 216 spectra preprocessed with the proposed method gave 97.3% sensitivity, which is very promising results for automatic BCC detection.

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Multi-Modal Biometries System for Ubiquitous Sensor Network Environment (유비쿼터스 센서 네트워크 환경을 위한 다중 생체인식 시스템)

  • Noh, Jin-Soo;Rhee, Kang-Hyeon
    • Journal of the Institute of Electronics Engineers of Korea CI
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    • v.44 no.4 s.316
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    • pp.36-44
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    • 2007
  • In this paper, we implement the speech & face recognition system to support various ubiquitous sensor network application services such as switch control, authentication, etc. using wireless audio and image interface. The proposed system is consist of the H/W with audio and image sensor and S/W such as speech recognition algorithm using psychoacoustic model, face recognition algorithm using PCA (Principal Components Analysis) and LDPC (Low Density Parity Check). The proposed speech and face recognition systems are inserted in a HOST PC to use the sensor energy effectively. And improve the accuracy of speech and face recognition, we implement a FEC (Forward Error Correction) system Also, we optimized the simulation coefficient and test environment to effectively remove the wireless channel noises and correcting wireless channel errors. As a result, when the distance that between audio sensor and the source of voice is less then 1.5m FAR and FRR are 0.126% and 7.5% respectively. The face recognition algorithm step is limited 2 times, GAR and FAR are 98.5% and 0.036%.

Replacement Condition Detection of Railway Point Machines Using Data Cube and SVM (데이터 큐브 모델과 SVM을 이용한 철도 선로전환기의 교체시기 탐지)

  • Choi, Yongju;Oh, Jeeyoung;Park, Daihee;Chung, Yongwha;Kim, Hee-Young
    • Smart Media Journal
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    • v.6 no.2
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    • pp.33-41
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    • 2017
  • Railway point machines act as actuators that provide different routes to trains by driving switchblades from the current position to the opposite one. Since point failure caused by the aging effect can significantly affect railway operations with potentially disastrous consequences, replacement detection of point machine at an appropriate time is critical. In this paper, we propose a replacement condition detection method of point machine in railway condition monitoring systems using electrical current signals, after analyzing and relabeling domestic in-field replacement data by means of OLAP(On-Line Analytical Processing) operations in the multidimensional data cube into "does-not-need-to-be replaced" and "needs-to-be-replaced" data. The system enables extracting suitable feature vectors from the incoming electrical current signals by DWT(Discrete Wavelet Transform) with reduced feature dimensions using PCA(Principal Components Analysis), and employs SVM(Support Vector Machine) for the real-time replacement detection of point machine. Experimental results with in-field replacement data including points anomalies show that the system could detect the replacement conditions of railway point machines with accuracy exceeding 98%.

Differences in the heritability of craniofacial skeletal and dental characteristics between twin pairs with skeletal Class I and II malocclusions

  • Park, Heon-Mook;Kim, Pil-Jong;Sung, Joohon;Song, Yun-Mi;Kim, Hong-Gee;Kim, Young Ho;Baek, Seung-Hak
    • The korean journal of orthodontics
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    • v.51 no.6
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    • pp.407-418
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    • 2021
  • Objective: To investigate differences in the heritability of skeletodental characteristics between twin pairs with skeletal Class I and Class II malocclusions. Methods: Forty Korean adult twin pairs were divided into Class I (C-I) group (0° ≤ angle between point A, nasion, and point B [ANB]) ≤ 4°; mean age, 40.7 years) and Class II (C-II) group (ANB > 4°; mean age, 43.0 years). Each group comprised 14 monozygotic and 6 dizygotic twin pairs. Thirty-three cephalometric variables were measured using lateral cephalograms and were categorized as the anteroposterior, vertical, dental, mandible, and cranial base characteristics. The ACE model was used to calculate heritability (A > 0.7, high heritability). Thereafter, principal component analysis (PCA) was performed. Results: Twin pairs in C-I group exhibited high heritability values in the facial anteroposterior characteristics, inclination of the maxillary and mandibular incisors, mandibular body length, and cranial base angles. Twin pairs in C-II group showed high heritability values in vertical facial height, ramus height, effective mandibular length, and cranial base length. PCA extracted eight components with 88.3% in the C-I group and seven components with 91.0% cumulative explanation in the C-II group. Conclusions: Differences in the heritability of skeletodental characteristics between twin pairs with skeletal Class I and II malocclusions might provide valuable information for growth prediction and treatment planning.

Differential Metabolomics Analysis of Ginseng (Panax ginseng) by Processing Time (가공시간에 따른 인삼의 대사체학 분석)

  • Choi, Moon-Young;Kim, Kyung-Min;Choi, Min-Suk;Heo, Yun-Seok;Lee, Hae-Na;Lee, Choong-Woo;Kwon, Sung-Won
    • Journal of Pharmaceutical Investigation
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    • v.38 no.1
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    • pp.23-29
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    • 2008
  • Red ginseng is made of white ginseng through the steaming and drying procedure. In this process, the amounts of toxic elements of ginseng are decreased and those of effective components, ginsenosides are increased. In order to identify the components alteration of white ginseng by processing time, we applied HPLC-based metabolomics approach combined with the principal component analysis (PCA) multivariate analysis. White ginsengs were steamed at 0, 1, 2, 4, 8 and 16 h, respectively and followed by drying process at moderate temperature. Then the steamed ginsengs and the commercial red ginsengs were analyzed by HPLC. On the basis of HPLC results, PCA multivariate analysis was applied for evaluating the quality of red ginseng, which showed the processed ginsengs are grouped by processed time because less polar ginsenosides were increased in proportion as the steaming time was increased. The purchased red ginsengs were distributed in the range of $0{\sim}1$ hour steaming time. This pilot experiment suggests that HPLC-based metabolomics approach is able to allow the quality of herbal medicines to be controlled with a simple and economic method.

Fuzzy Clustering Model using Principal Components Analysis and Naive Bayesian Classifier (주성분 분석과 나이브 베이지안 분류기를 이용한 퍼지 군집화 모형)

  • Jun, Sung-Hae
    • The KIPS Transactions:PartB
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    • v.11B no.4
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    • pp.485-490
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    • 2004
  • In data representation, the clustering performs a grouping process which combines given data into some similar clusters. The various similarity measures have been used in many researches. But, the validity of clustering results is subjective and ambiguous, because of difficulty and shortage about objective criterion of clustering. The fuzzy clustering provides a good method for subjective clustering problems. It performs clustering through the similarity matrix which has fuzzy membership value for assigning each object. In this paper, for objective fuzzy clustering, the clustering algorithm which joins principal components analysis as a dimension reduction model with bayesian learning as a statistical learning theory. For performance evaluation of proposed algorithm, Iris and Glass identification data from UCI Machine Learning repository are used. The experimental results shows a happy outcome of proposed model.