• Title/Summary/Keyword: Precise detecting

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Integration of metabolomics and transcriptomics in nanotoxicity studies

  • Shin, Tae Hwan;Lee, Da Yeon;Lee, Hyeon-Seong;Park, Hyung Jin;Jin, Moon Suk;Paik, Man-Jeong;Manavalan, Balachandran;Mo, Jung-Soon;Lee, Gwang
    • BMB Reports
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    • v.51 no.1
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    • pp.14-20
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    • 2018
  • Biomedical research involving nanoparticles has produced useful products with medical applications. However, the potential toxicity of nanoparticles in biofluids, cells, tissues, and organisms is a major challenge. The '-omics' analyses provide molecular profiles of multifactorial biological systems instead of focusing on a single molecule. The 'omics' approaches are necessary to evaluate nanotoxicity because classical methods for the detection of nanotoxicity have limited ability in detecting miniscule variations within a cell and do not accurately reflect the actual levels of nanotoxicity. In addition, the 'omics' approaches allow analyses of in-depth changes and compensate for the differences associated with high-throughput technologies between actual nanotoxicity and results from traditional cytotoxic evaluations. However, compared with a single omics approach, integrated omics provides precise and sensitive information by integrating complex biological conditions. Thus, these technologies contribute to extended safety evaluations of nanotoxicity and allow the accurate diagnoses of diseases far earlier than was once possible in the nanotechnology era. Here, we review a novel approach for evaluating nanotoxicity by integrating metabolomics with metabolomic profiling and transcriptomics, which is termed "metabotranscriptomics."

GEOTECHNICAL ENVIRONMENT SURVEY (2) (고심도 지반환경 조사 - 비파괴 물리탐사의 적용 (2))

  • HoWoongShon;SeungHeeLee;HyungSooKim
    • Journal of the Korean Geophysical Society
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    • v.6 no.4
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    • pp.261-268
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    • 2003
  • Lots of various utilities are buried under the surface. The effective management of underground utilities is becoming the very important subject for the harmonious administration of the city. Ground Penetrating Radar(GPR) survey including other various underground survey methods, is mainly used to detect the position and depth of buried underground utilities. However, GPR is not applicable, under the circumstances of shallow depth and places, where subsurface materials are inhomogeneous and are composed of clay, salt and gravels. The aim of this study is to overcome these limitations of GPR and other underground surveys. High-frequency electromagnetic (HFEM) method is developed for the non-destructive precise deep surveying of underground utilities. The method is applied in the site where current underground surveys are useless to detect the underground big pipes, because of poor geotechnical environment. As a result, HFEM survey was very successful in detecting the buried shallow and deep underground pipes and in obtaining the geotechnical information, although other underground surveys including GPR were not applicable. Therefore this method is a promising new technique in the lots of fields, such as underground surveying and archaeology.

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K-Band Radar Development for the Ground Moving Vehicle (지상 이동 차량용 K-대역 레이다 개발)

  • Lee, Jong-Min;Cho, Byung-Lae;Sun, Sun-Gu;Lee, Jung-Soo;Park, Sang-Soon
    • The Journal of Korean Institute of Electromagnetic Engineering and Science
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    • v.22 no.3
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    • pp.362-370
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    • 2011
  • This paper presents a K-band radar system installed on the ground moving vehicle to detect and track a high-speed target. The presented radar is separated into three search regions to satisfy a wide area detection and a limitation of the installing space of the radar, and each region performs detecting the target independently and tracking the detected target automatically. The presented radar radiating K-band FMCW waveform acquires range and velocity information of the target at the every dwell and receiving antenna of the radar is applied the multiple baseline interferometer to extract the precise angle information of the target. 3-dimensional tracking accuracy of the radar is 0.25 m RMSE measured actually through a fire experiment of an imitation target.

Color Code Detection and Recognition Using Image Segmentation Based on k-Means Clustering Algorithm (k-평균 클러스터링 알고리즘 기반의 영상 분할을 이용한 칼라코드 검출 및 인식)

  • Kim, Tae-Woo;Yoo, Hyeon-Joong
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.7 no.6
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    • pp.1100-1105
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    • 2006
  • Severe distortions of colors in the obtained images have made it difficult for color codes to expand their applications. To reduce the effect of color distortions on reading colors, it will be more desirable to statistically process as many pixels in the individual color region as possible, than relying on some regularly sampled pixels. This process may require segmentation, which usually requires edge detection. However, edges in color codes can be disconnected due tovarious distortions such as zipper effect and reflection, to name a few, making segmentation incomplete. Edge linking is also a difficult process. In this paper, a more efficient approach to reducing the effect of color distortions on reading colors, one that excludes precise edge detection for segmentation, was obtained by employing the k-means clustering algorithm. And, in detecting color codes, the properties of both six safe colors and grays were utilized. Experiments were conducted on 144, 4M-pixel, outdoor images. The proposed method resulted in a color-code detection rate of 100% fur the test images, and an average color-reading accuracy of over 99% for the detected codes, while the highest accuracy that could be achieved with an approach employing Canny edge detection was 91.28%.

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Peptide Nucleic Acid Probe-Based Analysis as a New Detection Method for Clarithromycin Resistance in Helicobacter pylori

  • Jung, Da Hyun;Kim, Jie-Hyun;Jeong, Su Jin;Park, Soon Young;Kang, Il-Mo;Lee, Kyoung Hwa;Song, Young Goo
    • Gut and Liver
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    • v.12 no.6
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    • pp.641-647
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    • 2018
  • Background/Aims: Helicobacter pylori eradication rates are decreasing because of increases in clarithromycin resistance. Thus, finding an easy and accurate method of detecting clarithromycin resistance is important. Methods: We evaluated 70 H. pylori isolates from Korean patients. Dual-labeled peptide nucleic acid (PNA) probes were designed to detect resistance associated with point mutations in 23S ribosomal ribonucleic acid gene domain V (A2142G, A2143G, and T2182C). Data were analyzed by probe-based fluorescence melting curve analysis based on probe-target dissociation temperatures and compared with Sanger sequencing. Results: Among 70 H. pylori isolates, 0, 16, and 58 isolates contained A2142G, A2143G, and T2182C mutations, respectively. PNA probe-based analysis exhibited 100.0% positive predictive values for A2142G and A2143G and a 98.3% positive predictive value for T2182C. PNA probe-based analysis results correlated with 98.6% of Sanger sequencing results (${\kappa}$-value=0.990; standard error, 0.010). Conclusions: H. pylori clarithromycin resistance can be easily and accurately assessed by dual-labeled PNA probe-based melting curve analysis if probes are used based on the appropriate resistance-related mutations. This method is fast, simple, accurate, and adaptable for clinical samples. It may help clinicians choose a precise eradication regimen.

Current Radiopharmaceuticals for Positron Emission Tomography of Brain Tumors

  • Jung, Ji-hoon;Ahn, Byeong-Cheol
    • Brain Tumor Research and Treatment
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    • v.6 no.2
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    • pp.47-53
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    • 2018
  • Brain tumors represent a diverse spectrum of histology, biology, prognosis, and treatment options. Although MRI remains the gold standard for morphological tumor characterization, positron emission tomography (PET) can play a critical role in evaluating disease status. This article focuses on the use of PET with radiolabeled glucose and amino acid analogs to aid in the diagnosis of tumors and differentiate between recurrent tumors and radiation necrosis. The most widely used tracer is $^{18}F$-fluorodeoxyglucose (FDG). Although the intensity of FDG uptake is clearly associated with tumor grade, the exact role of FDG PET imaging remains debatable. Additionally, high uptake of FDG in normal grey matter limits its use in some low-grade tumors that may not be visualized. Because of their potential to overcome the limitation of FDG PET of brain tumors, $^{11}C$-methionine and $^{18}F$-3,4-dihydroxyphenylalanine (FDOPA) have been proposed. Low accumulation of amino acid tracers in normal brains allows the detection of low-grade gliomas and facilitates more precise tumor delineation. These amino acid tracers have higher sensitivity and specificity for detecting brain tumors and differentiating recurrent tumors from post-therapeutic changes. FDG and amino acid tracers may be complementary, and both may be required for assessment of an individual patient. Additional tracers for brain tumor imaging are currently under development. Combinations of different tracers might provide more in-depth information about tumor characteristics, and current limitations may thus be overcome in the near future. PET with various tracers including FDG, $^{11}C$-methionine, and FDOPA has improved the management of patients with brain tumors. To evaluate the exact value of PET, however, additional prospective large sample studies are needed.

Development of body position sensor device for posture correction training (자세 교정훈련을 위한 체위 변환 감지 센서 디바이스의 개발)

  • Choi, Jung-Hyeon;Park, Jun-Ho;Seo, Jae-Yong;Kim, Soo-Chan
    • Journal of the Institute of Convergence Signal Processing
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    • v.21 no.2
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    • pp.80-85
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    • 2020
  • Recently the incidence of musculoskeletal disorders in students and office workers is increasing, and the necessity of maintaining correct posture and corrective training is required, but related research is insufficient. In the previous study, a membrane sensor or a pressure sensor was placed on the seat cushion to see the deviation of the body weight, or a sensor that restrained the user was attached to measure the position change. In this study, a sensor device for detecting a position change in consideration of wearing comfort was developed, and the measured angle was verified through an analysis app. A sensor device consisting of an IMU sensor is attached to the cervical spine and vertebra spine to measure the position transformation in the sitting position. The change value of the position measured by the two sensors was converted into an angle, and the angle value is displayed in real time through the analysis app. In this study, the possibility of measuring the real-time change value according to the change in position, the convenience of wearing, and the tendency of angle measurement were proved. Future research should proceed with more precise angle calculation and correction of motion noise.

Development of Snow Load Sensor and Analysis of Warning Criterion for Heavy Snow Disaster Prevention Alarm System in Plastic Greenhouse (비닐온실 폭설 방재 예·경보 시스템을 위한 설하중 센서 개발과 적설 경보 기준 분석)

  • Kim, Dongsu;Jeong, Youngjoon;Lee, Sang-ik;Lee, Jonghyuk;Hwang, Kyuhong;Choi, Won
    • Journal of The Korean Society of Agricultural Engineers
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    • v.63 no.2
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    • pp.75-84
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    • 2021
  • As the weather changes become frequent, weather disasters are increasing, causing more damage to plastic greenhouses. Among the damage caused by various disasters, damage by snow to the greenhouse takes a relatively long time, so if an alarm system is properly prepared, the damage can be reduced. Existing greenhouse design standards and snow warning systems are based on snow depth. However, even in the same depth, the load on the greenhouse varies depending on meteorological characteristics and snow density. Therefore, this study aims to secure the structural safety of greenhouses by developing sensors that can directly measure snow loads, and analysing the warning criteria for load using a stochastic model. Markov chain was applied to estimate the failure probability of various types of greenhouses in various regions, which let users actively cope with heavy snowfall by selecting an appropriate time to respond. Although it was hard to predict the precise snow depth or amounts, it could successfully assess the risk of structures by directly detecting the snow load using the developed sensor.

Prediction of Longline Fishing Activity from V-Pass Data Using Hidden Markov Model

  • Shin, Dae-Woon;Yang, Chan-Su;Harun-Al-Rashid, Ahmed
    • Korean Journal of Remote Sensing
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    • v.38 no.1
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    • pp.73-82
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    • 2022
  • Marine fisheries resources face major anthropogenic threat from unregulated fishing activities; thus require precise detection for protection through marine surveillance. Korea developed an efficient land-based small fishing vessel monitoring system using real-time V-Pass data. However, those data directly do not provide information on fishing activities, thus further efforts are necessary to differentiate their activity status. In Korea, especially in Busan, longlining is practiced by many small fishing vessels to catch several types of fishes that need to be identified for proper monitoring. Therefore, in this study we have improved the existing fishing status classification method by applying Hidden Markov Model (HMM) on V-Pass data in order to further classify their fishing status into three groups, viz. non-fishing, longlining and other types of fishing. Data from 206 fishing vessels at Busan on 05 February, 2021 were used for this purpose. Two tiered HMM was applied that first differentiates non-fishing status from the fishing status, and finally classifies that fishing status into longlining and other types of fishing. Data from 193 and 13 ships were used as training and test datasets, respectively. Using this model 90.45% accuracy in classifying into fishing and non-fishing status and 88.23% overall accuracy in classifying all into three types of fishing statuses were achieved. Thus, this method is recommended for monitoring the activities of small fishing vessels equipped with V-Pass, especially for detecting longlining.

A sampling and estimation method for monitoring poultry red mite (Dermanyssus gallinae) infestation on caged-layer poultry farms

  • Oh, Sang-Ik;Park, Ki-Tae;Jung, Younghun;Do, Yoon Jung;Choe, Changyong;Cho, Ara;Kim, Suhee;Yoo, Jae Gyu
    • Journal of Veterinary Science
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    • v.21 no.3
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    • pp.41.1-41.12
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    • 2020
  • Background: The poultry red mite, Dermanyssus gallinae, is a serious problem in the laying hen industry worldwide. Currently, the foremost control method for D. gallinae is the implementation of integrated pest management, the effective application of which necessitates a precise monitoring method. Objectives: The aim of the study was to propose an accurate monitoring method with a reliable protocol for caged-layer poultry farms, and to suggest an objective classification for assessing D. gallinae infestation on caged-layer poultry farms according to the number of mites collected using the developed monitoring method. Methods: We compared the numbers of mites collected from corrugated cardboard traps, regarding with length of sampling periods, sampling sites on cage, and sampling positions in farm buildings. The study also compared the mean numbers of mites collected by the developed method with the infestation levels using by the conventional monitoring methods in 37 caged-layer farm buildings. Results: The statistical validation provided the suitable monitoring method that the traps were installed for 2 days on feed boxes at 27 sampling points which included three vertical levels across nine equally divided zones of farms. Using this monitoring method, the D. gallinae infestation level can be assessed objectively on caged-layer poultry farms. Moreover, the method is more sensitive than the conventional method in detecting very small populations of mites. Conclusions: This method can be used to identify the initial stages of D. gallinae infestation in the caged-layer poultry farms, and therefore, will contribute to establishment of effective control strategies for this mite.