• 제목/요약/키워드: Phylogeny analysis

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Seven New Records of Penicillium Species Belonging to Section Lanata-Divaricata in Korea

  • Pangging, Monmi;Nguyen, Thuong T.T.;Lee, Hyang Burm
    • Mycobiology
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    • 제49권4호
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    • pp.363-375
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    • 2021
  • Penicillium species are known to be ubiquitous environmental saprophytes. In the survey of diversity of genus Penicillium, seven new records of Penicillium species belonging to section Lanata-Divaricata were isolated from freshwater and soil samples collected from different locations in Korea. Based on morphological characteristics and multilocus phylogenetic analysis of the rDNA internal transcribed spacer region (ITS), β-tubulin (BenA), and calmodulin (CaM) genes, the isolated strains were identified as P. annulatum, P. camponotum, P. echinulonalgiovense, P. globosum, P. limosum, P. onobense, and P. yunnanense, respectively. This study presents detailed phylogenetic analyses and morphological descriptions of these species that contribute to section Lanata-Divaricata in Korea.

Molecular Detection of Coxiella burnetii in Cattle on Ulleung Island, Korea: A Population-based Study with Four Years of Follow Up

  • Seo, Min-Goo;Kwon, Oh-Deog;Kwak, Dongmi
    • Parasites, Hosts and Diseases
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    • 제57권1호
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    • pp.69-73
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    • 2019
  • In a population-based study with 4 years of follow up, we evaluated the prevalence of Coxiella burnetii in cattle on Ulleung Island, Korea. In this study, the rates of C. burnetii infection in cattle on Ulleung Island were determined by PCR and were found to be 0.3-1.0% in the period 2011-2014. All 17 C. burnetii partial 16S rRNA gene sequences from PCR-positive cattle were identical and 2 geographic representatives were included in our analysis. The nucleotide sequences of the 2 samples showed high (98.4-100%) identity with C. burnetii sequences obtained from the GenBank. In this long-term tracking study, the number of cattle positive for C. burnetii on Ulleung Island was low. To prevent the transmission of C. burnetii on Ulleung Island, control strategy should include biosecurity improvement in surveillance, livestock management, administering suitable tests before purchasing animals to detect C. burnetii shedders, and restricting movements between herds.

Two New Species of the Genus Candelariella from China and Korea

  • Liu, Dong;Wang, Lisong;Wang, Xin Yu;Hur, Jae-Seoun
    • Mycobiology
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    • 제47권1호
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    • pp.40-49
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    • 2019
  • Candelariella is a widespread lineage of lichenized ascomycetes with ambiguous relationships among species that have not solved completely. In this study, several specimens belonging to Candelariella were collected from China and South Korea, and the internal transcribed spacer region was generated to confirm the system position of the newly collected specimens. Combined with a morphological examination and phylogenetic analysis, two new areolate species, Candelariella rubrisoli and C. subsquamulosa, are new to science. Detail descriptions of each new species are presented. In addition, C. canadensis is firstly reported from China mainland.

First Report of Apple Decline Caused by Botryosphaeria sinensis in Korea

  • Lee, Seung-Yeol;Ten, Leonid N.;Back, Chang-Gi;Jung, Hee-Young
    • 한국균학회지
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    • 제49권3호
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    • pp.417-423
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    • 2021
  • Apple decline symptoms were frequently observed on cv. Fuji apple orchards located in Gyeonggi, Gyeongbuk, and Gangwon provinces during surveys conducted from May until the end of September 2020. Three fungal strains were isolated from the margins of internal lesions of diseased apple trees, and their morphological characteristics were considered similar to Botryosphaeria sinensis. Phylogenetic analysis using internal transcribed spacer (ITS) regions, translation elongation factor 1-alpha (tef1), beta-tubulin (tub2), and the second largest subunit of RNA polymerase II (rpb2) gene sequences confirmed the closest relationship of isolates with B. sinensis at the species level. According to a pathogenicity test, the appearance of dark-brown discolorations and vascular necrosis on apple branches inoculated with the isolated strain KNUF-20-014 was observed. To the best of our knowledge, this is the first report of B. sinensis as the causal agent of apple disease in Korea.

Current Taxonomical Status of Korean Auricularia Species

  • Cho, Sung-Eun;Kwag, Young-Nam;Lee, Dong-Hyeon;Han, Jae-Gu;Kim, Chang Sun
    • 한국균학회지
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    • 제49권1호
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    • pp.21-31
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    • 2021
  • Auricularia (Auriculariaceae, Basidiomycota) is well-known jelly fungi, and most species are cultivated or utilized medicinally around the world. A total of 127 Auricularia specimens were collected during Korean mushroom forays by the Korea National Arboretum from 2008 to 2020. In this investigation, fungal barcode analysis and morphological examinations of 33 specimens were conducted and five Korean Auricularia species were identified. Of the species identified, A. americana, A. heimuer, and A. villosula were new to Korea, while A. auricula-judae which was previously identified in Korea, was not found. Herein, we discuss the Korean Auricularia species and provide a taxonomic key for their morphological identification.

Macruropyxis fraxini on Fraxinus rhynchophylla: Confirmation in the Korean Peninsula after 82 Years and the First Record in South Korea

  • Jung, Bok-Nam;Choi, Young-Joon;Shin, Hyeon-Dong;Park, Ji-Hyun
    • Mycobiology
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    • 제48권6호
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    • pp.518-521
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    • 2020
  • Macruropyxis fraxini has been recorded on several species of Fraxinus in China, Japan, Russia (Far East), and North Korea since its first recorded observation as a rust fungus on F. rhynchophylla in Jilin, China, in 1899. In the Korean Peninsula, the rust fungus was first recorded on F. rhynchophylla in 1935, based on four specimens collected at Mt. Kumgangsan, Gangwondo Province, in the North Korean territory. We confirmed this rust in the Korean Peninsula after 82 years. The rust fungus was identified based on morphological characteristics and a molecular phylogenetic analysis. This is the first record of M. fraxini in South Korea.

Report on a New Truffle Species, Tuber koreanum sp. nov., from Korea

  • Park, Hyeok;Gwon, Ju-Hui;Lee, Jong-Chul;Eom, Ahn-Heum
    • Mycobiology
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    • 제49권6호
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    • pp.527-533
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    • 2021
  • The truffle and ectomycorrhizal roots formed by Tuber sp. were collected from the rhizosphere of Quercus aliena in Korea. The morphological characteristics of the ascoma, and molecular phylogenetic analysis using sequences from the internal transcribed spacer (ITS) and large subunit (LSU) of ribosomal DNA, translation elongation factor 1-alpha (TEF), and RNA polymerase second largest subunit (RPB2) regions confirmed the distinct morphology of the truffle. This truffle belongs to a monophyletic clade among the other Tuber species in the phylogeny. This study describes the truffle, Tuber koreanum, as a new species reported from Korea.

New records of two ulvophycean freshwater species, Lithotrichon pulchrum (Ulvales, Ulvophyceae) and Tupiella speciosa (Ulotrichales, Ulvophyceae)

  • Kwon, Dae Ryul;Nam, Hyun Ju;Jo, Bok Yeon;Nam, Seung Won
    • Journal of Species Research
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    • 제11권2호
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    • pp.79-88
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    • 2022
  • The Ulvophyceae are a diverse group and most species are distributed in marine environments, however, a smaller diversity occurs in freshwater and terrestrial habitats. Also, the diversity of species belonging to Ulvophyceae has been superficially investigated in Korea. Here, we identify two freshwater ulvophycean species based on the morphology, ultrastructural observation, and phylogenetic analysis. As a result, their taxonomic classifications are as follows: order Ulvales Blackman and Tansley, 1902 - family Kornmanniaceae Golden and Cole, 1986 - Lithotrichon pulchrum Darienko and Proschold 2017; order Ulotrichales Borzi, 1895 - family Tupiellaceae Skaloud and Leliaert, 2018 - Tupiella speciosa Darienko and Proschold 2017. The family Tupiellaceae and the two genera Lithotrichon and Tupiella are reported for the first time in Korea.

Revisiting Rhytisma lonicericola: Morphological Characterization and Molecular Phylogenetic Analysis

  • Jung, Bok-Nam;Park, Ji-Hyun;Shin, Hyeon-Dong
    • Mycobiology
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    • 제50권2호
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    • pp.150-154
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    • 2022
  • Rhytisma lonicericola was identified as a tar spot fungus on Lonicera sp. in 1902, and has since been recorded on several species of Lonicera in China, Japan, and Korea. Most of the previous records of R. lonicericola have been based on a list of disease occurrences in the absence of any formal morphological identification or molecular analyses. Using six newly obtained specimens collected in the past 2 years, we confirmed the tar spot fungus found on L. japonica in Korea as R. lonicericola based on morphological examinations and molecular phylogenetic analyses. This fungus was distinguished from R. xylostei, another tar spot fungus on Lonicera, by ascospore size and geographical distributions. We present detailed mycological information and, for the first time, DNA sequence data useful for the identification of R. lonicericola.

Re-Examination of Several Elsinoë Species Reported from Japan

  • Anysia Hedy Ujat;Tsuyoshi Ono;Yukako Hattori;Chiharu Nakashima
    • Mycobiology
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    • 제51권3호
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    • pp.122-138
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    • 2023
  • Elsinoë are plant pathogenic fungi that cause scabs, spotted anthracnose, and some morphological distortions on various plants, including woody plants, economically important crops, and ornamental plants. Taxonomical reexamination of Elsinoë species in Japan has not yet been conducted based on the modern species criteria. In this study, several Japanese isolates were reexamine based on the morphological and molecular-phylogenetic analysis of the internal transcribed spacer region (ITS), large subunit gene (LSU)m and protein-coding gene such as RNA polymerase II subunit (rpb2) and Translation elongation factor 1-alpha (tef). Japanese isolates were divided into four clades and three new species, Elsinoë hydrangeae, E. sumire, and E. tanashiensis were proposed. One species, Sphaceloma akebiae, was transferred to the genus Elsinoë.