• Proceedings of the Korean Society for Applied Microbiology Conference
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• 2001.06a
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• pp.116-117
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• 2001

A thermotolerant bacterium, designated as PHS1, was isolated from a hot spring in Pohang, Korea, on the basis of its ability to grow on BTEX as a sole carbon source. We cloned and sequenced the entire BTEX-degrading pathway genes of PHS1 and found that two multicomponent mono-oxygenases together with meta-pathway genes are responsible for the BTEX biodegradation.

• Communications of the Korean Mathematical Society
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• v.36 no.2
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• pp.267-276
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• 2021

The aim of the present investigation is to establish the composition formulas for the pathway fractional integral operator connected with Hurwitz-Lerch zeta function and extended Wright-Bessel function. Some interesting special cases have also been discussed.

• Genomics & Informatics
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• v.17 no.4
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• pp.45.1-45.3
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• 2019

To identify pathways associated with survival phenotypes using gene expression data, we recently proposed the hierarchical structural component model for pathway analysis of gene expression data (HisCoM-PAGE) method. The HisCoM-PAGE software can consider hierarchical structural relationships between genes and pathways and analyze multiple pathways simultaneously. It can be applied to various types of gene expression data, such as microarray data or RNA sequencing data. We expect that the HisCoM-PAGE software will make our method more easily accessible to researchers who want to perform pathway analysis for survival times.

• BMB Reports
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• v.44 no.10
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• pp.613-618
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• 2011

Two key molecules in skeletal tissues are bone formation master transcription factor Runx2 and the steroid hormone estrogen. It is well known that these two molecules play pivotal roles in bone homeostasis; however, the functional interaction between Runx2 and estrogen synthesis in skeletal tissues is largely unknown. Recent studies have indicated that there is a positive relationship between Runx2 and the estrogen biosynthesis pathway. In this review, a possible functional link between Runx2 and estrogen synthesis pathway in skeletal tissues will be discusses as well as the biological significance of this interaction.

• Korean Journal of Acupuncture
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• v.33 no.3
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• pp.114-120
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• 2016

Objectives : It aims to establish a basic rule in Korean translation of the pathway of lung meridian in Miraculous Pivot Meridian vessel. Based on the rule, We tried to make standard translation of the pathway of lung meridian in Miraculous Pivot Meridian vessel. Methods : Books needed for this study were collected through searching Kyunghee University Library(http:// khis.khu.ac.kr). Keywords included "Miraculous Pivot of Huangdi's Internal Classic". We also include the book which is generally used as a textbook in Colleges of Korean Medicine. Results : In five Chinese books, the word-spacing was used differently in four phrases. Six Korean-translated books had the different translation in three phrases. We suggested a standard Korean translation of the pathway of lung meridian in Miraculous Pivot Meridian vessel. Conclusions : This result of the study would be expected to not only be published in Korean Journal of Acupuncture but be studied more about Korean translation by experts in this field.

• Proceedings of the Korean Society for Bioinformatics Conference
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• 2005.09a
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• pp.415-420
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• 2005

Mathematical modeling and simulation of biochemical reaction networks gained a lot of attention recently since it can provide valuable insights into the interrelationships and interactions of genes, proteins and metabolites in a reaction network. A number of attempts have been made for modeling and storing biochemical reaction networks without their dynamical properties but unfortunately storing and efficiently querying of the dynamic (mathematical) models are not yet studied extensively. In this paper, we present a novel nested relational data schema to store a pathway with its dynamic properties. We then show how to make the mapping between this dynamic pathway schema with the corresponding static pathway representation.

• Proceedings of the Korean Society for Bioinformatics Conference
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• 2005.09a
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• pp.383-387
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• 2005

One of the most important issues in post-genome era is identifying functions of genes and understanding the interaction among them. Such interactions from complex biochemical pathways, which are very useful to understand the organism system. We present an integrated biochemical pathway database system with a set of software tools for reconstruction, visualization, and simulation of the pathways from the database. The novel features of the presented system include: (a) automatic integration of the heterogeneous biochemical pathway databases, (b) gene ontology for high quality of database in the integration and query (c) various biochemical simulations on the pathway database, (d) dynamic pathway reconstruction for the gene list or sequence data, (e) graphical tools which enable users to view the reconstructed pathways in a dynamic form, (f) importing/exporting SBML documents, a data exchange standard for systems biology.

• Journal of Chest Surgery
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• v.23 no.1
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• pp.205-212
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• 1990

A 17 year old female patient with Ebstein`s anomaly received surgical treatment for WPW syndrome and AV nodal reentrant supraventricular tachycardia[SVT] Electrophysiologic study revealed that an anomalous pathway was located in the right posterolateral portion and antegrade dual AV nodal pathway responsible for AV nodal reentrant tachycardia. The patient was underwent surgery on February 18, 1987. Intraoperative mapping was used to define the location of accessory pathway. The accessory pathway was cryoablated through the epicardium. Simultaneously discrete cryoablation around the perinodal area was performed to prevent AV nodal reentrant SVT. The atrialized right ventricle of Ebstein`s anomaly was plicated with 11 pledget mattress sutures under the cardiopulmonary bypass. Two and half years after surgery, the patient has no evidence of WPW syndrome or supraventricular tachycardia.

• Proceedings of the Korean Information Science Society Conference
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• 2003.04c
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• pp.407-409
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• 2003

최근 바이오인포메틱스 분야는 IT의 발전과 더불어 급속한 발전을 이루어 왔다. 또한 기존의 분자생물학분야의 연구들을 컴퓨터의 첨단 기술을 이용하여 자동화, 전산화하는 것으로 생명정보의 데이터베이스 구축을 시작으로 서열정보의 주석처리 둥이 발전되어 왔다. 또한 분자생물학의 오랜 연구결과들 중 수많은 문헌들을 토대로 한 분석인 텍스트마이닝, 정보추출은 전산학의 방법으로 데이터를 추출, 수집하여 분자생물학 데이터의 양적 팽창을 더욱 가속화하고 있다. 본 논문에서는 수집된 biological Pathway 정보의 효율적인 저장, 재사용 그리고 활용을 위해 바이오 온톨로지 기반의 XML DB를 설계하고자 한다. XML 스키마를 이용해 표현한 온톨로지를 기반으로 다양한 포맷의 생물학 데이터를 수집하고 수집된 데이터들로 XML DB를 구축한 후 Biological Pathway 정보 표현과 재사용. 나아가 생명정보학 응용분야에 활용하려 한다.

• Biomolecules & Therapeutics
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• v.21 no.5
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• pp.323-331
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• 2013

TGF-${\beta}$ pathway is being extensively evaluated as a potential therapeutic target. The transforming growth factor-${\beta}$ (TGF-${\beta}$) signaling pathway has the dual role in both tumor suppression and tumor promotion. To design cancer therapeutics successfully, it is important to understand TGF-${\beta}$ related functional contexts. This review discusses the molecular mechanism of the TGF-${\beta}$ pathway and describes the different ways of tumor suppression and promotion by TGF-${\beta}$. In the last part of the review, the data on targeting TGF-${\beta}$ pathway for cancer treatment is assessed. The TGF-${\beta}$ inhibitors in pre-clinical studies, and Phase I and II clinical trials are updated.