• Journal of the Korea Academia-Industrial cooperation Society
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• v.20 no.12
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• pp.117-124
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• 2019

Vibrio cholerae is a very important pathogenic bacterium that has to be monitored in seafood and ships' ballast water. Various methods have been developed to identify this bacterium, yet these methods are time-consuming and have limitations for their sensitivity to detect contamination. The purpose of the present study was to develop a robust and reliable method for identifying V. cholerae. Peptide nucleic acid (PNA) probes were developed to use for PNA-based asymmetrical real-time PCR techniques. The toxigenic Cholera enterotoxin subunit B (ctxB) gene was selected as a target for detecting V. cholerae and the gene was synthesized as a positive template for conventional and real-time PCR. Real-time PCR primers and PNA probes were designed and standard curves were produced for the quantitative analysis. The selected PNA probes reacted specifically to V. cholerae without any ambiguity, even among closely related species, and the detection limit was 0.1 cfu/100 mL. Taken together, the PNA probes and asymmetrical qPCR methods developed in this present study could contribute to the rapid, accurate monitoring of V. cholerae in marine environments, and as well as in seafood and ships' ballast waters.

• Korean Journal of Medicinal Crop Science
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• v.20 no.5
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• pp.387-392
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• 2012

This study was carried out to identify Korean ginseng cultivars using peptide nucleic acid (PNA) microarray. Sixty-seven probes were designed based on nucleotide variation to distinguish Korean ginseng cultivars of Panax ginseng. Among those PNA probes, three (PGB74, PGB110 and PGB130) have been developed to distinguish five Korean ginseng cultivars. Five Korean ginseng cultivars were denoted as barcode numbers depending on their fluorescent signal patterns of each cultivar using three probe sets in the PNA microarray. Five Korean ginseng cultivars, Chunpoong, Yunpoong, Gopoong, Gumpoong and Sunpoong, were simply denoted as '111', '222', '211', '221' and '122', respectively. This is the first report of PNA microarray which provided an objective and reliable method for the authentication of Korean ginseng cultivars. Also, the PNA microarray will be useful for management system and pure guarantee in ginseng seed.

• The KIPS Transactions:PartC
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• v.8C no.6
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• pp.865-874
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• 2001

In this paper, we have designed and implemented Web based Home Phoneline Neworking Aliance(Home PNA)device management, system which can resolve the unfair bandwidth service form may subscribers and manage subscribes using these devices. To manage Home PNA device with Simple Network Management Protocol(SNMP) management elements are classified into system. Port performance, fault functional area based on Management Information Base(MIB) objects from Multi Dwelling Unit(MDU) devices MIB. System management provides configuration information of each MDU devices, and port management provides the current state of subscribes and performs filtering operation against the unauthorized users. And performance management provides traffic information about trunk and subscriber lines. Finally fault management provides fault logging fo the unexpected events and trap message from devices To verify the operability of the proposed system, we have tested it in real network environment.

• Annals of Clinical Microbiology
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• v.18 no.2
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• pp.37-43
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• 2015

Background: Tuberculosis is globally the most important cause of death from single pathogen. Rapid and accurate identification of mycobacteria is essential for the control of tuberculosis. We evaluated a fluorescence in situ hybridization (FISH) method using peptide nucleic acid (PNA) probes for the differentiation of Mycobacterium tuberculosis complex (MTB) and nontuberculous mycobacteria (NTM) in direct smears of sputum specimens. Methods: The cross-reactivity of MTB- and NTM-specific PNA probes was examined with reference strains of M. tuberculosis ATCC 13950, Mycobacterium kansasii ATCC 12479, Mycobacterium fortuitum ATCC 6841, several clinical isolates of mycobacteria (Mycobacterium abscessus, Mycobacterium avium, Mycobacterium intracellulare, Mycobacterium gordonae and Mycobacterium chelonae), and 11 frequently isolated respiratory bacterial species other than mycobacteria. A series of 128 sputa (89 MTB culture positive, 29 NTM culture positive, and 10 under treatment culture negative) with grades of trace to 4+ were used to evaluate the performance of the method. Results: The MTB- and NTM-specific PNA probes showed specific reactions with the reference strains of MTB and M. kansasii and clinical isolates of mycobacteria except M. fortuitum ATCC 6841, and no cross-reactivity with other tested bacteria. The PNA probe-based FISH assay for detection of MTB had a sensitivity and specificity of 100%, respectively. The sensitivity and specificity of the NTM-specific PNA probe was 100%. The smear grades of the PNA FISH test were same as with those of the fluorescence AFB stain in 2+ or higher grade. Conclusion: Detection and differentiation based on PNA FISH is sensitive and accurate for detecting mycobacteria and for differentiating MTB from NTM in clinical sputum smears.

• Proceedings of the IEEK Conference
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• 2002.06a
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• pp.61-64
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• 2002

In this paper, various equalizers are considered to improve the performance of Home Phoneline Networking Alliance (HomePNA) 2.0 system under dispersive channel with intersymbol interference. We evaluate and compare the performances of Recursive Least Squares (RLS) and Least Mean Squares (LMS) adaptation algorithms. Computer simulations show that the equalizers utilizing tile RLS algorithm outperforms the LMS algorithm, especially for the system of high symbol rate and complex constellation.

• Proceedings of the IEEK Conference
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• 2002.06a
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• pp.65-68
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• 2002

본 논문은 HomePNA 2.0 시스템에서 채널에 의한 왜곡을 보상하기 위한 방안을 제시하는 것으로서 심벌률과 전송 방식에 따른 등화기를 Fast RLS 알고리즘인 FTF (Fast Transversal Filter) 알고리즘을 사용하여 구현하여 그 성능을 분석하며, 또한 헤더 부분의 미결정 심벌들을 이용하는 DFE (Decision Feedback Equalizer)형태로 등화기를 구성하고 이에 대한 성능을 분석하고자한다.

• Bulletin of the Korean Chemical Society
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• v.19 no.11
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• pp.1189-1193
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• 1998

The determination of total paraffin, naphthene, and aromatic (PNA) contents in naphtha samples, which were directly obtained from actual refining process, has been studied using near-infrared (NIR) spectroscopy. Each of the total PNA concentrations in naphtha has been successfully analyzed using NIR spectroscopy. Partial least squares (PLS) regression method has been utilized to quantify the total PNA contents in naphtha from the NIR spectral bands. The NIR calibration results showed an excellent correlation with those of conventional gas chromatography (GC). Due to its rapidity and accuracy, NIR spectroscopy is appeared as a new analytical technique which can be substituted for the conventional GC method for the quantitative analysis of petrochemical products including naphtha.

• Proceedings of the IEEK Conference
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• 2000.11d
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• pp.131-134
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• 2000

This paper presents the circuit design and implementation of a HomePNA (Home Phoneline Network Alliance) 1M8 PHY transceiver for specification ver1.1. This paper describes a physical medium interface, an Ethernet MAC controller unit interface, and a management interface of the HomePNA transceiver. The designed HomePNA transceiver can support any specifications having more than 32Mbits/sec(maximum in HomePNA ver2.0) transmission rate by changing physical medium interface, because Ethernet MAC controller unit interface has been designed by using MII.

• Fisheries and Aquatic Sciences
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• v.17 no.3
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• pp.339-344
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• 2014

PCR amplification with universal primer is a useful tool for speciation of symbionts in marine eukaryote coupled with robust separation method such as denaturing high performance chromatography (DHPLC). To overcome the biased amplification, clamping PCR is recommended to suppress the amplification of host gene. In this study, we evaluated the efficiency of rare gene detection for two kinds of clamping probes which were successfully utilized for eukaryotic symbiont analysis: C3 linked nucleotide (C3) and peptide nucleic acid (PNA). PNA was 3-4 orders of magnitude higher than that of C3 tested in clamping efficiency and rare gene detection. This represented that PNA could be a more competent clamping probe for the enhancement of PCR amplification for rare symbiont genes.

• Proceedings of the Korean Vacuum Society Conference
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• 2012.02a
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• pp.540-540
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• 2012

Selective detection of single nucleotide polymorphism (SNP) of Cytochrome P450 2C19 (CYP2C19) was carried out by the PNA chips which were electrically-interfaced with interdigitated nanogap electrodes (INEs). The INEs whose average gap distance and effective gap length were about ~70 nm and ${\sim}140{\mu}m$, respectively, were prepared by the combination of the photo lithography and the surface-catalyzed chemical deposition, without using the e-beam lithography which is almost inevitable in the conventional lab-scale fabrication of the INEs. Four different types of target DNAs were successfully detected and discriminated by the INE-based PNA chips.