• KSBB Journal
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• v.27 no.5
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• pp.301-307
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• 2012

The hyphal growth, production of color pigments and monacolin K by Monascus strains were investigated in liquid medium. Thirty five different strains were collected and cultured in potato dextrose yeast extract broth (PDYB), potato dextrose broth (PDB) and malt extract broth (MEB) medea at $25^{\circ}C$ for 7 days. The growth rates of most of strains were highest in PDYB medium. Growth rate as well as pigment production were influenced by suspension conditions of mycelia during liquid cultivation. Most of strains producing monacolin K corresponded to strains producing red pigment highly and showing more pH changes of liquid media. Monacolin K produced from strains was detected in culture broth as well as mycelia. Any citrinin was not detected in monacolin K producing strains. These results imply that the selection of the strains producing red pigment highly and showing more pH changes in liquid cultivation could be applied for primary screening of Monascus strains for preparation of red mold rice.

• Journal of KIISE:Computer Systems and Theory
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• v.33 no.7
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• pp.380-389
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• 2006

In this paper, we present the MGrid system and its application for the construction of the Glycoconjugates simulation database called e-Glycoconjugates. The MGrid system is an integrated molecular simulation grid system for computing, databases, and analyses. For e-Glycoconjugates, we have been constructing the simulation database for 2,000 glycan chains and 100 glycoproteins until 2008. In this paper, we present the goal, architecture, and current implementation status of the MGrid system, and e-Glycoconjugates.

• Journal of Microbiology and Biotechnology
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• v.18 no.1
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• pp.48-54
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• 2008

A putative ${\omega}$-aminotransferase gene, cc3143 (aptA), from Caulobacter crescentus was screened by bioinformatical tools and overexpressed in E. coli, and the substrate specificity of the ${\omega}$-aminotransferase was investigated. AptA showed high activity for short-chain ${\beta}$-amino acids. It showed the highest activity for 3-amino-n-butyric acid. It showed higher activity toward aromatic amines than aliphatic amines. The 3D model of the ${\omega}$-aminotransferase was constructed by homology modeling using a dialkylglycine decarboxylase (PDB ID: 1DGE) as a template. Then, the ${\omega}$-aminotransferase was rationally redesigned to increase the activity for 3-amino-3-phenylpropionic acid. The mutants N285A and V227G increased the relative activity for 3-amino-3-phenylpropionic acid to 3-amino-n-butyric acid by 11-fold and 3-fold, respectively, over that of wild type.

• The Korean Journal of Pharmacology
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• v.32 no.2
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• pp.211-219
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• 1996

The inhibitory effect of cyclosporin A (CsA) on nitric oxide production is not related to the immunosuppressive action of the drug, but to the renal toxicity and arterial hyper-tension. In this study the experimental interventions to reverse the inhibition of nitric oxide production by cyclosporin A in rat aortic smooth muscle cells were examined. CsA inhibited the accumulation of nitrite, the stable end product of nitric oxide, in culture media in a concentration $(0.1{\sim}100{\mu}g/ml)-dependent$ manner. The inhibitory effect of CsA on nitrite accumulation were not antagonized by arginine (10 mM), a substrate of nitric oxide synthase, nor by calcium ionophore A23187 $(7{\mu}M)$. Forskolin, an activator of adenylate cyclase, which enhanced iNOS induction at transcriptional level, completely reversed the inhibitory action of CsA on nitrite accumulation. However, PMA (2 nM) and PDB (50 nM), PKC activators, increased the inhibitory action of CsA on nitrite accumulalion. From these results, it is suggested that cyclic AMP-elevating agents may be candidates of therapeutic agents in prevention and treatment of renal toxicity and arterial hypertension induced by CsA. Among conventional antihypertensive drugs, calcium channel blockers and ${\alpha}-blockers$ are preferred to ${\beta}-blockers$.

• Journal of the Institute of Convergence Signal Processing
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• v.8 no.1
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• pp.73-77
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• 2007

In this paper, we propose a VLSI architecture of an LMS filter based on a Cyclo-static scheduler for fast computation of LMS filteing algorithm which is widely used in adptive filtering area. This process is composed of two steps: scheduling and circuit synthesis. The scheduling step accepts a fully specified flow graph(FSFG) as an input, and generates an optimal Cyclo-static schedule in the sense of the sampling rate, the number of processors, and the input-output delay. Then the generated schedule is transformed so that the number of communication edges between the processors. The circuit synthesis part translates the modified schedule into a complete circuit diagram by performing resource allocations. The VLSI layout generation can be performed easily by an existing silicon compiler.

• Bulletin of the Korean Chemical Society
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• v.34 no.4
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• pp.1089-1095
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• 2013

The tumor necrosis factor-receptor 1 (TNFR1)-associated death domain protein (TRADD) contains an N-terminal TRAF binding domain and a C-terminal death domain. TRADD is known to interact directly with TNF receptor 2 (TNFR2) and the Fas-associated death domain protein (FADD), which are signal transducers that activate NF-${\kappa}B$ and induce apoptosis, respectively. To date, there has been no structural information on the TRADD and FADD death domain (DDs) complex. In this study, the death domains of TRADD and FADD were co-expressed and purified from Escherichia coli for structural characterization. We found that human TRADD (hTRADD) interacted strongly with mouse FADD (mFADD) via their DDs and interacted weakly with human FADD (hFADD)-DD. Moreover, the structures of the TRADD-DD:FADD-DD complexes were separately modeled from predicted structures in the protein data bank (PDB). The results of this study will have important applications in human diseases such as cancer, AIDS, degenerative and autoimmune diseases, and infectious diseases.

• Journal of Integrative Natural Science
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• v.7 no.4
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• pp.241-252
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• 2014

A series of N-benzoylated ligands incorporating three different benzoyl groups 2,2'-(benzoyliminodiethylene)-4-substituted phenols ($L^{1,4,7}$), 2,2'-(4-nitrobenzoyliminodiethylene)-4-substituted phenols ($L^{2,5,8}$) and 2,2'-(3,5-dinitrobenzoyliminodiethylene)-4-substituted phenols ($L^{3,6,9}$) were synthesized and characterized by IR, $^1H$ NMR, $^{13}C$ NMR and mass spectroscopy. The In vitro antibacterial activity of investigated ligands were tested against human pathogenic bacteria such as four Gram (-) Enterococcus faecalis, Pseudomonas aeruginosa, Staphylococcus aureus, Vibrio cholera, Vibrio harveyi and two Gram (+) Staphylococcus aureus, Streptococcus mutans. Furthermore, docking studies were undertaken to gain insight into the possible binding mode of these compounds with the binding site of the topoisomerase II (PDB: 4FM9) enzyme which is involved in DNA superhelicity and chromosome seggregation. The N-benzoylated derivatives $L^{5,7,8}$ have significant anticancer activity as Topoisomerase inhibitors. The ligands $L^5$ and $L^8$ were tested for their anticancer activity against human liver adenocarcinoma (HepG2) cell line with the MTT assay.

• The Journal of Natural Sciences
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• v.12 no.1
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• pp.69-79
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• 2002

850 strains of phosphate-solubilizing bacteria were isolated from soil of Chung-nam and Daejeon region using 0.5% calcium phosphate containing medium. The HS-2 strain with the highest rock phosphate-solubilizing activity was selected and identified as Azotobacter sp. HS-2 based on the microbiological characteristics. The optimum culture temperature and initial pH of medium for solubilization of rock phosphate were $30^{\circ}C$ and pH 6.0-7.0, respectively. Addition of oxalic acid(0.5M) into the PDB-rock phosphate medium increased 50% solubilization of rock phosphate.

• Genomics & Informatics
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• v.21 no.2
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• pp.21.1-21.14
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• 2023

Fusobacterium nucleatum is a gram-negative bacteria associated with diverse infections like appendicitis and colorectal cancer. It mainly attacks the epithelial cells in the oral cavity and throat of the infected individual. It has a single circular genome of 2.7 Mb. Many proteins in F. nucleatum genome are listed as "Uncharacterized." Annotation of these proteins is crucial for obtaining new facts about the pathogen and deciphering the gene regulation, functions, and pathways along with discovery of novel target proteins. In the light of new genomic information, an armoury of bioinformatic tools were used for predicting the physicochemical parameters, domain and motif search, pattern search, and localization of the uncharacterized proteins. The programs such as receiver operating characteristics determine the efficacy of the databases that have been employed for prediction of different parameters at 83.6%. Functions were successfully assigned to 46 uncharacterized proteins which included enzymes, transporter proteins, membrane proteins, binding proteins, etc. Apart from the function prediction, the proteins were also subjected to string analysis to reveal the interacting partners. The annotated proteins were also put through homology-based structure prediction and modeling using Swiss PDB and Phyre2 servers. Two probable virulent factors were also identified which could be investigated further for potential drug-related studies. The assigning of functions to uncharacterized proteins has shown that some of these proteins are important for cell survival inside the host and can act as effective drug targets.

• Proceedings of the Korea Information Processing Society Conference
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• 2008.05a
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• pp.407-409
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• 2008

생명체는 여러 가지 물질로 구성되어 있으며, 그 생명체의 분포지역에 따라 생물 종 특성도 다르게 나타난다. 그래서 연구자들이 생명체에 관한 정보를 확인하려면 그 생명체의 종 정보, 지역과 생태정보를 관련 생물다양성 데이터베이스에서 검색하며, 생명체를 구성하는 유전자 서열정보와 단백질 구조정보는 Genbank, PDB 등의 유전자/단백질 데이터베이스에서 검색하고 있다. 또한 그 생명체에 관한 학술적 내용이 수록된 학술 논문까지 별도로 검색해야만 그 생물체에 관한 정확한 정보를 획득할 수 있다. 이런 불편함을 해결하려면 하나의 생명체를 검색할 때, 생명체의 종 정보, 위치 정보, 생명체를 구성하고 있는 유전자 정보, 그리고 논문정보를 연계하여 검색할 수 있는 시스템이 필요하다. 이에, 본 논문에서는 하나의 생명체를 검색할 때 종 정보뿐만 아니라 GIS를 이용한 위치정보와 생명체를 구성하는 유전자 정보를 연계하고 그 생명체에 관한 논문 정보까지 검색 가능한 생명정보 연계검색 인터페이스를 설계하였다.