• Title/Summary/Keyword: Order topology

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Prediction of Transmembrane Protein Topology Using Position-specific Modeling of Context-dependent Structural Regions

  • Chi, Sang-Mun
    • Journal of the Korean Data and Information Science Society
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    • v.16 no.3
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    • pp.683-693
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    • 2005
  • This paper presents a new transmembrane Protein topology prediction method which is an attempt to model the topological rules governing the topogenesis of transmembrane proteins. Context-dependent structural regions of the transmembrane protein are used as basic modeling units in order to effectively represent their topogenic roles during transmembrane protein assembly. These modeling units are modeled by means of a tied-state hidden Markov model, which can express the position-specific effect of amino acids during ransmembrane protein assembly. The performance of prediction improves with these modeling approaches. In particular, marked improvement of orientation prediction shows the validity of the proposed modeling. The proposed method is available at http://bioroutine.com/TRAPTOP.

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The Role of S-Shape Mapping Functions in the SIMP Approach for Topology Optimization

  • Yoon, Gil-Ho;Kim, Yoon-Young
    • Journal of Mechanical Science and Technology
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    • v.17 no.10
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    • pp.1496-1506
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    • 2003
  • The SIMP (solid isotropic material with penalization) approach is perhaps the most popular density variable relaxation method in topology optimization. This method has been very successful in many applications, but the optimization solution convergence can be improved when new variables, not the direct density variables, are used as the design variables. In this work, we newly propose S-shape functions mapping the original density variables nonlinearly to new design variables. The main role of S-shape function is to push intermediate densities to either lower or upper bounds. In particular, this method works well with nonlinear mathematical programming methods. A method of feasible directions is chosen as a nonlinear mathematical programming method in order to show the effects of the S-shape scaling function on the solution convergence.

A controllability-based formulation for the topology optimization of smart structures

  • Goncalves, Juliano F.;Fonseca, Jun S.O.;Silveira, Otavio A.A.
    • Smart Structures and Systems
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    • v.17 no.5
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    • pp.773-793
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    • 2016
  • This work presents a methodology to distribute piezoelectric material for structural vibration active control. The objective is to design controlled structures with actuators which maximizes the system controllability. A topology optimization was formulated in order to distribute two material phases in the domain: a passive linear elastic material and an active linear piezoelectric material. The objective is the maximization of the smallest eigenvalue of the system controllability Gramian. Analytical sensitivities for the finite element model are derived for the objective functions and constraints. Results and comparisons with previous works are presented for the vibration control of a two-dimensional short beam.

Wavelength Assignment Algorithms fora Multihop Lightwave Network

  • Seo, Jun-Bae;Seo, Hyun-Hwa;Lee, Hyong-Woo;Cho, Choong-Ho
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.28 no.6B
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    • pp.523-532
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    • 2003
  • GENMET(GEneralized Multihop Network) which is based on Wavelength-Division Multiplexsing(WDM) and can be used in order to construct the next generation lightwave network is a logical(virtual), packet-switched and multihop topology network. GENMET is a regular multihop network which is a generalization of Shuffle network and do Bruijn network As such, it has the advantage of simple routing which is critical in a high speed network Given a physical topology, different logical topologies can be derived for assigning wavelengths to the UserNodes. By appropriately assigning wavelengths, performance of the network, such as mean hop count, maximum throughput and mean packet delay can be improved. In this paper, we propose heuristic algorithms for effectively assigning a limited number of wavelengths to the given UserNodes. The Performance of proposed algorithm is compared with the random assignment and the lower bounds.

Design Method for Cost Efficient Survivable Network (효율적 비용의 서바이벌 네트워크 설계방안)

  • Song, Myeong-Kyu
    • The Journal of the Institute of Internet, Broadcasting and Communication
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    • v.9 no.6
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    • pp.117-123
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    • 2009
  • There are two types of survivability. We find the characteristics of them for networks. And using the dual homing, we analysis the routing cost and link cost. Also we propose the cost-efficient heuristic design method of network topology in order to use survivability. By design samples, we analysis the cost efficiency and show that the new design method can be used to design network topology for survivability easily.

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Topology Optimal Interior Permanent Magnet Machine to Improve the Utilization Ratio of Permanent Magnet (영구자석 사용 효율 향상을 위한 IPM 전동기의 최적 토폴로지)

  • Tao, Xu;Zhang, Dianhai;Zhu, Lixun;Koh, Chang-Seop
    • Proceedings of the KIEE Conference
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    • 2015.07a
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    • pp.862-863
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    • 2015
  • This paper presents an improved estimation procedure for the contribution to no-load flux linkage created by the permanent magnet (PM) in interior permanent magnet synchronous machines. In the proposed method, the saturation effect in stator and rotor cores are taken into account by utilizing the frozen permeability method (FPM). This improved procedure can evaluate the contribution for each local element in the PM to the no-load flux linkage. According to the analysis results, an effective PM topology optimal design can be carried out to achieve high utilization ratio of PM in the machine. In order to determine the threshold of the low contribution of PM for removing, one multi-objective optimization model is proposed. Based on the optimal threshold, the final optimal topology design of PM can be achieved.

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Comparative Studies of Topology Optimization Using Continuous Approximation of Material Distribution (재료분포의 연속적인 근사를 이용한 위상최적설계 방법의 비교 연구)

  • Lim, Young-Seok;Yoo, Jeong-Hoon;Terada, Kenjiro;Nishiwaki, Shin-Ji;Min, Seung-Jae
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.30 no.2 s.245
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    • pp.164-170
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    • 2006
  • To prevent the numerical instabilities in topology optimization, continuous approximation of material distribution (CAMD) is proposed to the homogenization design method (HDM) and the simple isotropic material with penalization (SIMP) method. The continuous FE approximation of design variables including high order elements is applied to the formulation of SIMP method. Numerical examples are presented to compare the efficiency of CAMD both in HDM and SIMP.

Structural Design of Piezoelectric Microactuator Using Topology Optimization (위상최적화를 이용한 압전형 마이크로 엑츄에이터의 구조설계)

  • Chae, Jin-Sic;Min, Seung-Jae
    • Proceedings of the KSME Conference
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    • 2003.11a
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    • pp.1413-1418
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    • 2003
  • In this study, the topology optimization is applied to the design of a piezoelectric microactuator satisfying the specific mean transduction ratio(MTR). The optimization problem is formulated to minimize the difference between the specified and the current mean transduction ratio. In order to analyze the response of the piezoelectric-structure coupled system, both the structural and the electric potential are considered in the finite element method. The optimization problem is resolved by using Sequential Linear Programming(SLP) and the results of test problems show that the design of a piezoelectric microactuator with specified mean transduction ratio can be obtained.

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Optimal Design of Nonlinear Coupled Multiphysics Structural Systems using The Element Connectivity Parameterization (복합 물리 시스템 위상 최적설계를 위한 요소 연결 매개법)

  • Yoon, Gil-Ho;Kim, Yoon-Young
    • Proceedings of the KSME Conference
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    • 2004.04a
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    • pp.1017-1022
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    • 2004
  • Though the standard element density-based topology optimization method has been applied for the optimal design of multiphysics systems, some theoretical problems, such as material interpolation, undershoot temperature prediction, and unstable elements, still remain to be overcome. The objective of this investigation is to present a new topology optimization formulation based on the element connectivity parameterization (ECP) in order to avoid the numerical problems in multiphysics system design and improve optimization results. To show the validity of the proposed approach, the designs of an optimal thermal dissipation and an electro-thermal-compliant actuator were considered.

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Design Sensitivity Analysis and Topology Optimization of Thermal Systems Considering Convection Heat Transfer (대류를 고려한 열전달 시스템의 민감도 해석 및 위상 최적 설계)

  • Moon, Hee-Gon;Wang, Se-Myung;Shim, Ho-Kyung
    • Proceedings of the KSME Conference
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    • 2004.04a
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    • pp.1053-1057
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    • 2004
  • This paper presents the adjoint variable design sensitivity analysis for thermal systems considering both conduction and convection heat transfer. Both nodal temperature and total heat flow are considered to be objective functions and design sensitivity formulas are derived for each case. For the case of convection heat transfer, the adjoint analysis is carefully proceeded to obtain a precise result. A topology optimization example is examined for a simple planar square plate in order to design a heat exchanger as verification.

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