• Journal of the Korean earth science society
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• v.24 no.7
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• pp.635-649
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• 2003

Heavy metal concentrations and benthic foraminiferal distributions were investigated in three short sediment cores in order to understand the pollution history in Masan Bay. Sedimentation rates were 0.33 cm/yr, 0.20 cm/yr and 0.33 cm/yr in the inner bay, the out fall of Dugdong sewage disposal plant, and bay mouth, respectively. The rapid increases of copper, zinc and lead concentrations at the core depth of 10 cm the upper part indicated that Masan Bay has been polluted with industrial wastes since the 1940s. Benthic foraminifera in core sediments show that the variations in their distribution were followed by industrial pollution in the bay. The number of individuals and species diversity decreased, whereas agglutinated tests increased upward in the cores with increased heavy metal pollution. These shifts effectd the abundance of few tolerant forms and consequently decreased the species diversity. The opportunistic species Eggerella advena and Trochammina pacifica increased in polluted sediments. These species can be used as an indicator for assessments of environmental quality in Masan Bay.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.7 no.4
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• pp.235-246
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• 2002

The fish farming using net cages has been developed in many semi-closed bays in the southern coast of Korea for the last two decades. The intensive cage cultures of fishes generate considerable amounts of organic waste in the form of uneaten food and faeces. In order to evaluate the effect of fish farming activities we collected the benthic macrofauna near the fish farm area located in Wolho Islet of Gamak Bay and in Haklim Island of Tongyeong in November 1998. Benthic macrofaunal assemblages showed dramatic changes in species number, species diversity, and faunal abundance in the region of the fish farm. These changes were clearly observed even at a distance of up to 30 m from the fish farming cage area. Within 5 m from the cage, there was a zone with low species diversity and highest density, dominated by opportunistic polychaete worm, Capitella capitata. By a distance of 15-30 m, this zone presents highest species number and higher density. Our results clearly demonstrated that fish farm area was highly enriched with organic materials, and implied that the fish farm industry and adjacent benthic ecosystem in semi-closed bay will be seriously damaged by self produced organic wastes in the near future.

• Journal of Wetlands Research
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• v.7 no.2
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• pp.69-88
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• 2005

Distribution of benthic macrofauna was surveyed in the subtidal area and on the sand flat of Sindu-ri coast during July 2002. A total of 134 species, 3,511 individuals and 388g biomass of macrobenthos were sampled inclusively from the study sites. 109 species with a mean density of $1,298ind./m^2$ and biomass of $69.4g/m^2$ were collected from 10 stations established in the subtidal area. Polychaetes were represented as a dominant faunal group of the subtidal area in both species richness and density with values of 54 species and $813ind./m^2$. Cluster analysis based on the faunal composition showed that the subtidal area could be divided into four stational groups according to sedimentary characteristics: Cirrophorus armatus - Lumbrineris longifolia association on the mud sediment with pebbles near aqua-farms; Aonides oxycephala association on the rocky bed; Scoloplos armiger - Grandifoxus cuspis association on the sand-dominated sediment along the lowest low water; a association with higher evenness on the sand-dominated sediment in the depth. Although having characteristics of high value in species richness, density and species diversity, the macrobenthic association around the farming area was dominated by the opportunistic species such as Lumbrineris longifolia and Tharyx sp. Natural community represented by S. armiger and G. cuspis was developed in most sand-dominated areas. 50 species were sampled with a mean density of $2,443ind./m^2$ and biomass of $381.3g/m^2$ from eight+ stations along two transects on Sindu-ri sand flat. Mollusks were represented as a dominant faunal group of the sand flat in species richness, density and biomass with values of 20 species, $1,345ind./m^2$ and $350.4g/m^2$, respectively. Umbonium thomasi, Veneridae sp., Mandibulophoxus mai, Armandia lanceolata, Eohaustorius spinigerus, Urothoe convexa were dominant species and these species accounted for over 83% of total individuals. There were three distinct zones of macrobenthos on Sindu-ri sand flat according to the extent of exposure time. The upper zone was dominated by Scopimera globosa, the middle zone was characterized by M. mai, and the lower zone was dominated by E. spinigerus. Sindu-ri coastal area was considered as a healthy habitat for macrobenthos, except for around the farming area. It was considered that Sindu-ri coastal area including the sand flat connected to the sand dune of natural monument was a valuable habitat as a protected site in having no pollution source and no artificial structure.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.16 no.4
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• pp.254-267
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• 2011

In order to assess structure changes of marine benthic communities in the Youngsan River Estuarine Bay for this 10-year period, we sampled macrobenthos in 2006 using the van Veen grab at the same 40 stations where a previous benthic community survey was conducted in 1995. The number of species and mean density of macrobenthos in 2006 decreased significantly than those of 1995. There were no significant differences in both the number and the density of polychaetous species between the two sampling periods, while both number and den-sity of molluscan species decreased significantly. Although the first two density-dominant species, semelid bivalve Theora fragilis and polychaete Tharyx sp. occurred as most dominant species, but the density of T. fragilis decreased significantly in many stations between 1995 and 2006. However, polychaete Tharyx sp. showed increment in density and percentage composition within community. The area dominated by T. fragilis was replaced by Tharyx sp.. Also, polychaete Poecilochaetus johnsoni and bivalve Raetellops pulchella which were pre-dominant in 1995 decreased significantly by 2006. Bivalve Yoldia johanni decreased its density and reduced its distribution area by 2006. Species diversity and rarefaction curves also revealed that overall species richness decreased. These results confirmed that the dominant species and species diversity of macrobenthic communities in the area should be changed due to anthropogenic stresses during 10 years.

• Korean Journal of Ichthyology
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• v.29 no.1
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• pp.62-68
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• 2017

The Alaska pollock (Gadus chalcogrammus) belongs to the family Gadidae; it is a cold water fish, and has been developed as a novel aquaculture species in Korea. In this study, we describe ongoing surveillance for aquatic animal pathogens based on growth stages. We investigated bacterial flora in rearing water, and monitored pathogens; we also analyzed histopathological traits of abnormal fish. In rearing water, the total bacterial counts were $2.1{\times}10^3cfu/mL$ and Vibrio spp. (52%) were predominant in the larvae stage. In the juvenile and adult stages, the total bacterial counts were $3.4{\times}10^3$ and $3.2{\times}10^2cfu/mL$, respectively (with Pseudomonas sp. as the predominant species; 90% and 52%). This result revealed that the bacterial flora in rearing water changed depending on the feeding types. No virulent-bacteria or problematic viruses (VHSV, viral hemorrhagic septicemia virus; NNV, nervous necrosis virus; MBV, marine birnavirus) were detected from outwardly healthy fish using either culture or PCR assay. Some juveniles (less than 5%) had gas bubbles on the gill lamellae, degeneration of the corneal epithelium, and choroid gland degeneration, suggesting that these symptoms were caused by external injury and secondary infection by opportunistic bacteria. Disease management is important to cope with disease emergence in the novel aquaculture species Alaska pollock.

• Korean Journal of Clinical Laboratory Science
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• v.48 no.2
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• pp.94-101
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• 2016

Acinetobacter species isolates are important opportunistic pathogens and commonly implicated in nosocomial infections. The therapeutic options for treatment of the bacterial infections are limited because the bacteria isolates are usually multidrug resistant (MDR). In the current study, we investigated various carbapenemase genes in 68 Acinetobacter species isolates. Antimicrobial susceptibilities were tested using the disk diffusion method. Screening of carbapenemase genes was performed via multiplex PCR. In addition, PCR and DNA sequencing were used to identify the carbapenemase genes. Repetitive extragenic palindromic-PCR (REP-PCR) was also performed to assess the clonality of isolates. In our study, A. baumannii isolates were highly resistant to all agents tested while all non-A. baumannii isolates were susceptible to all agents tested, with the exception of aztreonam and cefotaxime. All 51 A. baumannii isolates contained the $bla_{OXA-51}$ gene and 37 (72.5%) isolates also harbored the $bla_{OXA-23}$ gene. In addition, 39 MDR A. baumannii isolates were identified in our study and 37 isolates contained the $bla_{OXA-23}$ gene. The 37 MDR strains harboring $bla_{OXA-23}$ showed type I (n=22) or type II (n=15) banding patterns on their REP-PCR profiles. Our results suggest clonal relation and horizontal spreading of MDR A. baumannii isolates containing the $bla_{OXA-23}$ gene at the hospital located in Daejeon. Continuous investigation of antimicrobial resistant determinants and monitoring emergence and dissemination of MDR isolates is required to prevent and control infection and colonization of MDR A. baumannii isolates.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.13 no.1
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• pp.67-82
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• 2008

This study was performed to investigate changes in benthic environment and macrobenthic polychaete communities in Gamak Bay where various environmental quality improvement projects have been implemented in recent years. Field surveys were carried out in February, 2005 and February, 2006 and twenty stations were selected to explore whether or not there were between-year differences in biotic and abiotic variables. Of 10 environmental variables measured, only three variables including dissolved oxygen (DO), total ignition loss (IL), acid volatile sulfide (AVS) showed significant between-year differences. Specifically, IL and AVS were, on average, 1.5 and 3 times lower in 2006 compared to those in 2005, respectively, which was more pronounced in the northern part of the bay. A total of 95 polychaete species was sampled from the two sampling occasions. Between-year differences in the number of species, abundance, and diversity were varied from place to place. In the northern part of the bay, fewer species were found in 2006 rather than in 2005, but diversity increased in 2006 due to the reduction in dominance of a few species. On the contrary, in the central part of the bay, the number of species, abundance and diversity prominently increased in 2006. In the southern part of the bay, all the biological indices maintained similarly during the two years. Dominant species in 2005 were such opportunistic or organic pollution indicator species as Lumbrineris longifolia, Capitella capitata, Mediomastus californiensis, Pseudopolydora paucibranchiata, etc. and most of them were mainly distributed in the northern part of the bay and in the proximity of it. In 2006, however, Euchone alicaudata, L. longifolia, Paraprionospio pinnata, Flabelligeridae sp., etc. were dominant and distributed mainly in the central part of the bay. Multivariate analyses showed that the whole polychaete community could be divided into 5 groups reflecting the geographical positions of the sampling stations and temporal variation particularly in the northern part of the bay. According to the results of BIO-ENV procedure, TOC (${\rho}=0.52$) and AVS (${\rho}=0.49$) as a single variable best explained the polychaete community structure. The best combination was made by such variables as TOC, AVS, sorting coefficient, and water temperature (${\rho}=0.60$). In conclusion, between-year differences in biotic and abiotic variables imply that recent efforts for the environmental improvement produced positive influences on the benthic environment of Gamak Bay, particularly the northern part of the bay.

• Korean Journal of Veterinary Service
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• v.21 no.1
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• pp.97-104
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• 1998

Fugi are eukaryotic, nonphotosynthetic, filamentous or unicellular organisms, most of which grow on nonliving materials as saphrophytes. The majority are therefore opportunistic pathogens and predisposing factors often contribute to the establishment of fungal infection. These include an alteration in the normal flora of the host by prolonged administration of antibiotics, immunosup-pression, concurrent infections, damage to the skin or mucous membranes, constantly moist areas of skin or the exposure to a large infective dose, and as with fungal spores. Fungi may cause a variety of diseases which may be due directly to fungal invasion of tissue or more often to the ingestion of toxins produces by fungi in growing, standing or stored grains and other animals feeds. In this experiment, contaminated fugi were isolated and identified from animal feedstuffs such as Korean cattle, milking cows, pigs and chickens. Twelve genues were isolated from animal feeds, they are 9 from Korean cattle and milking cows feeds, 6 from pigs feeds, and 10 from chickens feeds. Among them, most frequently encountered species was Yeast(56 strains), followed by Fusarium sp(41 strains), Aspergillus sp(20 strains), each of Micorsporum sp and Trichophyton sp(17 strains), Penicilium sp(12 strains), in order. And also minority was isolated as Candide sp(4 strains), Trichoderma sp(3 strains), each of Epidermophytom sp and Absida sp(2 strains), and each of Sporothrix sp and Maduromyces sp(1 strain). Among the Aspergillus sp 20 isolates, A flavus(5 strains), A nidulans(4 strains), A fumigatus(3 strains), A glucans(3 strains), A niger(3 strains) and A terreus(2 strains) were identified.

• Parasites, Hosts and Diseases
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• v.48 no.1
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• pp.9-13
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• 2010

Pentatrichomonas hominis is considered a commensal protozoan in the large intestine of a number of mammalian hosts, such as cats, dogs, and non-human primates. The resulting infections, which can induce diarrhea, have been attributed to opportunistic overgrowth of P. hominis. This study was performed to confirm the P. hominis infection and its molecular characterization from the feces of puppies with diarrhea. Fecal samples were obtained from 14 German shepherd puppies with diarrhea over 1 week (7 females and 7 males, 2-9 months of age) residing on a dog farm in August 2007. Species-specific PCR assay identified P. hominis 18S rRNA genes in 3 of the 14 puppies (1 female and 2 males; 1 aged 2 months and 2 aged 9 months). This phylogenetic analysis established that P. hominis belonged to the 1st clade, which is comprised of Bos taurus and Felines.

• Journal of Microbiology and Biotechnology
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• v.19 no.9
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• pp.932-945
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• 2009

Several species of Gram-positive bacteria have cell wall peptidoglycan (syn. murein) in which not all of the sugar moieties are N-acetylated. This has recently been shown to be a secondary effect, caused by the action of a peptidoglycan N-acetylglucosamine deacetylase. We have found that the opportunistic pathogen Listeria monocytogenes is unusual in having three enzymes with such activity, two of which remain in the cytoplasm. Here, we examine the enzyme (PgdA) that crosses the cytoplasmic membrane and is localized in the cell wall. We purified a hexa-His-tagged form of PgdA to study its activity and constructed a mutant devoid of functional Lmo0415 (PgdA) protein. L. monocytogenes PgdA protein exhibited peptidoglycan N-acetylglucosamine deacetylase activity with natural substrates (peptidoglycan) from both L. monocytogenes and Escherichia coli as well as the peptidoglycan sugar chain component N-acetylglucosamine, but not with N-acetylmuramic acid. As was reported recently [6], inactivation of the structural gene was not lethal for L. monocytogenes nor did it affect growth rate or morphology of the cells. However, the pgdA mutant was more prone to autolysis induced by such agents as Triton X-100 and EDTA, and is more susceptible to the cationic antimicrobial peptides (CAMP) lysozyme and mutanolysin, using either peptidoglycan muramidases or autolysis-inducing agents. The pgdA mutant was also slightly more susceptible than the wild-type strain to the action of certain beta-lactam antibiotics. Our results indicate that protein PgdA plays a protective physiological role for listerial cells.