• Journal of Preventive Veterinary Medicine
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• 제41권3호
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• pp.121-123
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• 2017

The hepatitis E virus (HEV) is a leading causative agent of acute hepatitis in humans. Zoonotic HEV strains have been isolated from several animal species, including pigs. New HEV variants have been recently isolated from camels in the Middle East. In the present study, fecal samples from fallow deer, formosan deer, alpaca, and guanaco were analyzed for the detection of HEV. One HEV strain was detected from guanaco, a species of camelids. The nucleotide sequence of guanaco HEV was identical to those of deer HEV-3 strains, which implied the cross-species transmission of HEV-3 from deer to guanaco.

• Korean Journal of Fisheries and Aquatic Sciences
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• 제54권5호
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• pp.596-616
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• 2021

A global increase in fish consumption has led to a rapid expansion of aquaculture production, which has been linked to enhancing the spread of infectious diseases. Viral diseases can cause high mortality in many cultured fish species, posing a serious threat to the aquaculture industry. Infectious hematopoietic necrosis virus (IHNV) is one of the primary threats to aquacultured salmonid species, causing huge economic losses. Since the first report in cultured sockeye salmon Oncorhynchus nerka during the 1950s in North America, IHNV has spread to other regions, including Europe, Asia, South America, and Africa by transportation of infected fish and eggs, causing disease and increasing mortality in a wide variety of salmonid species. Here, we review existing information relevant to IHNV: its phylogenetic characteristics, origin, infection history, virulence determinants, susceptible hosts, vectors, and vaccine development. This review also addresses a possible cross-species transmission of IHNV to a new host, olive flounder Paralichthys olivaceus, a cultured fish of economic importance in East Asian countries.

• KSII Transactions on Internet and Information Systems (TIIS)
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• 제6권11호
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• pp.2784-2799
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• 2012

Biological data have been increased exponentially in recent years, and analyzing these data using data mining tools has become one of the major issues in the bioinformatics research community. This paper focuses on the protein construction process in higher organisms where the deoxyribonucleic acid, or DNA, sequence is filtered. In the process, "unmeaningful" DNA sub-sequences (called introns) are removed, and their meaningful counterparts (called exons) are retained. Accurate recognition of the boundaries between these two classes of sub-sequences, however, is known to be a difficult problem. Conventional approaches for recognizing these boundaries have sought for solely enhancing machine learning techniques, while inherent nature of the data themselves has been overlooked. In this paper we present an approach which makes use of the data attributes inherent to species in order to increase the accuracy of the boundary recognition. For experimentation, we have taken the data sets for four different species from the University of California Santa Cruz (UCSC) data repository, divided the data sets based on the species types, then trained a preprocessed version of the data sets on neural network(NN)-based and support vector machine(SVM)-based classifiers. As a result, we have observed that each species has its own specific features related to the splice sites, and that it implies there are related distances among species. To conclude, dividing the training data set based on species would increase the accuracy of predicting splicing junction and propose new insight to the biological research.

• Korean Journal of Ecology and Environment
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• 제42권2호
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• pp.145-152
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• 2009

The fish community was investigated from March to October 2007 in Gwangneung Arboretum. During the survey period, 22 species belonging to 9 families were collected. Among them, one species (Coitus koreanus) was classified as an endangered species in Korea, and exotic fish was Micropterus salmoides. Nine species (40.9%) were endemic species of Korea. Dominant species was R. oxycephalus (St. 1) and Z. platypus (St. 2-7). According to analysis of community based on the diversity, evenness and richness indices, fish community seems to be more stable in the St. 3. The distributions of Silurus microdorsalis, Cottus koreanus and Odontobutis platycephala were confined to the Bongseonsa Stream in the Wangsuk Stream watershed. When our data were compared with the previous data (1932), 17 species were not sampled, but 7 species could new taxa fiend its existence at the Bongseonsa Stream. We believe that Hemibarbus mylodon, Acheilognathus signifer and Zacco koreanus disappeared in the Wangsuk Stream watershed and A. signifer and Z. koreanus need to be restored at the Bongseonsa Stream.

• The Plant Pathology Journal
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• 제40권1호
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• pp.16-29
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• 2024

The Colletotrichum gloeosporioides species complex includes many phytopathogenic species, causing anthracnose disease on a wide range of host plants and appearing to be globally distributed. Seventy-one Colletotrichum isolates in the complex from different plants and geographic regions in Korea were preserved in the Korean Agricultural Culture Collection (KACC). Most of them had been identified based on hosts and morphological features, this could lead to inaccurate species names. Therefore, the KACC isolates were re-identified using DNA sequence analyses of six loci, comprising internal transcribed spacer, gapdh, chs-1, his3, act, and tub2 in this study. Based on the combined phylogenetic analysis, KACC strains were assigned to 12 known species and three new species candidates. The detected species are C. siamense (n = 20), C. fructicola (n = 19), C. gloeosporioides (n = 9), C. aenigma (n = 5), C. camelliae (n = 3), C. temperatum (n = 3), C. musae (n = 2), C. theobromicola (n = 2), C. viniferum (n = 2), C. alatae (n = 1), C. jiangxiense (n = 1), and C. yulongense (n = 1). Of these, C. jiangxiense, C. temperatum, C. theobromicola and C. yulongense are unrecorded species in Korea. Host plant comparisons showed that 27 fungus-host associations are newly reported in the country. However, plant-fungus interactions need to be investigated by pathogenicity tests.

• Animal Systematics, Evolution and Diversity
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• 제30권2호
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• pp.108-118
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• 2014

Micronesia is an island nation located north of Papua New Guinea in the Pacific Ocean. A survey was conducted on Chuuk, which is one of the four main islands of Micronesia, from 11-25 Nov 2012. Echinoderms collected at one intertidal area as well as at 16 SCUBA diving points of 10-40 m depths in the subtidal zone were identified based on morphological characteristics. In total, 35 species from 165 individuals were identified: two crinoids, eight asteroids, four ophiuroids, seven echinoids, and 14 holothuroids. Among them, one asteroid, one ophiuroid, one echinoid, and two holothuroids were newly recorded from Micronesia.

• Korean Journal of Environmental Biology
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• 제39권4호
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• pp.423-434
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• 2021

Two new free-living marine nematodes of the genus Belbolla Andrássy, 1973 belonging to family Enchelidiidae are newly described based on specimens obtained from a shallow subtidal sediment of the western and southern outermost islands of Korea. Belbolla koreensis sp. nov. differs from other species of the genus by the combination of the following characteristics: longer body length (3,080-3,462 ㎛ long), eight oesophageal bulbs in the posterior region of pharynx, well-developed two winged precloacal supplements (anterior precloacal supplement slightly longer than posterior one: 47-59 ㎛ vs. 43-46 ㎛ long), strongly arcuated, very thick, L-shaped spicule (122-127 ㎛ long, 1.7-1.9 anal body diameter(a.b.d.) long) with three separated blunt distal tips, and well-developed relatively long cylindrical shaped gubernacular apophysis with blunt teeth covering two thirds of the dorsal margin (57-58 ㎛ long, 0.8-0.9 a.b.d. long). Belbolla hoonsooi sp. nov. is characterized by the following combination of characteristics: longer body length (3,494 ㎛ long), eight oesophageal bulbs in the posterior region of pharynx, well-developed two winged precloacal supplements (anterior precloacal supplement slightly longer than posterior one: 43 ㎛ vs. 36 ㎛ long), strongly arcuated, L-shaped spicule (119 ㎛ long, 1.5 a.b.d. long) with three separated blunt distal tip, and well-developed relatively long inverted triangle shaped gubernacular apophysis with blunt teeth covering half of the dorsal margin (45 ㎛ long, 0.6 a.b.d. long). Detailed morphological characteristics and illustrations of two new Belbolla nematodes from the Korean seawaters were provided by differential interference contrast microscopy. Comparative tables on biogeographical and morphological characteristics of Belbolla species are also provided herein.

• The Korean Journal of Mycology
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• 제40권2호
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• pp.73-77
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• 2012

Nomenclatural code for fungi was dramatically modified in the 18th International Botanical Congress (IBC) held in Melbourne, Australia in July 2011. Its name was changed into International Code of Nomenclature for Algae, Fungi and Plants (ICN), which was formerly called as International Code of Botanical Nomenclature (ICBN) of the Vienna Code of 2005. The most important change for fungi is abandoning dual nomenclature and introducing one fungus/one name system (2013. 1). Since more than 10,000 species of fungal names should be renamed based on this new classification system (one fungus/one name system), it is challenging to both mycologists and taxonomic users such as plant pathologists and food scientists. Here, we introduced background, progress and future plan for its transition into one fungus/one name system. The new code is allowing electronic-only publication of names of new taxa (2102. 1) and the requirement for a Latin validating diagnosis was changed to allow either English or Latin for the publication of a new name (2011. 1). Furthermore, pre-publication deposit of key nomenclatural information in a recognized repository is mandatory in ICN (2013. 1). The aims of this manuscript are to introduce new code of fungal nomenclature and recent trends in one fungus/one name system to Korean mycological society.

• Applied Biological Chemistry
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• 제37권6호
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• pp.492-497
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• 1994

Extracts of 43 species of plants were tested for their insecticidal and acaricidal activities against six species of insect pests and one mite species. The methanol extract of Ginkgo biloba leaves selectively was found to have potent insecticidal activity against Nilaparvata lugens (Stal), whereas steam distillate of Thujopsis dolabarata var. hondai sawdust showed potent insecticidal activities with a broad spectrum. The methanol extract of Pinus densiflora leaves and steam distillate of T. dolabrata var. hondai sawdust exhibited potent activities against Tetranychus urticae (Koch).

• Korean Journal of Plant Taxonomy
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• 제44권4호
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• pp.250-256
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• 2014

This study was carried out to understand the genetic relationship of three Aloe spp. cultivated in Korea, A. saponaria, A. vera and A. arborescens and a new variant in Korea based on three plastid (matK, trnL-F, rbcL) and one nuclear (ITS regions) DNA barcode markers. A total of 2,420 bp sequence was amplified. Two indels were detected in the trnL region, and also several species specific nucleotide loci were detected in all 29 parsimonious informative sites, and 148 variable sites were detected among four taxa studied while 170 variable and 75 parsimonious sites were detected when other Aloe spp. in worldwide were used. An UPGMA phenogram with 10,000 bootstrap replication showed that the new variant was closest to A. vera. The variant was not morphologically and genetically concurrent with any reported species so far. The clustering of Aloe species were broadly in agreement with previously reported results.