• 대한원격탐사학회:학술대회논문집
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• 대한원격탐사학회 1998년도 Proceedings of International Symposium on Remote Sensing
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• pp.399-403
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• 1998

Absorption coefficient per mass unit of particles, specific absorption coefficient, is one of main parameters in developing algorithms for ocean color remote sensing. Specific absorption coefficient of chlorophyll (a$^*_{ph}$) and suspended sediment (SS) were analyzed by "wet filter technique" and "Kishino method" for data sets observed in the Yellow and Mediterranean Seas. A new data-recovering method for the filter technique was also developed using spectrum slopes. This method recovered the baseline of spectrum that was often missed in the Kishino method. High a$^*_{ph}$($\lambda$) values in the oligotrophic Mediterranean Sea and low values in the Yellow Sea were observed, spanning over the range of 0.02 to 0.12 $m^2$/mg, at the chlorophyll maximum absorption wavelength 440nm. The empirical relationship between a$^*_{ph}$ and chlorophyll concentration was found to fit a power function, which was slightly different from that proposed by Bricaud et ai. (1995). Absorption specific coefficients for suspended sediment (a$^*_{SS}$) didn't show any relationship with concentrations of suspended sediment. However, the average value of a$^*_{SS}$ at 440nm was close to the specific absorption coefficient of soil (loess) measured by Ahn (1990). The more-pronounced variability of a$^*_{SS}$ than a$^*_{ph}$ perhaps can explain more wide range of size-distribution for SS, which were determined by their specific gravity and agitation of water mass in the sea surface.

• Journal of Microbiology
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• 제45권1호
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• pp.1-5
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• 2007

The bacterial compositions between the dental unit water system and human saliva were characterized and compared by direct sequence analysis of 16S rDNA clone libraries. Based on the species richness estimation, bacterial diversity in the dental unit water system (DUW) was more diverse than that of the human saliva (HS). The Chaol estimates of species richness in HS and DUW samples were 12.0 and 72.4, respectively. The total numbers of OTUs observed in the combined libraries accounted for 83% (HS) and 59% (DUW) of the Chaol diversity estimate as defined at the 80% similarity threshold. Based on the sequence analysis, the phylum Proteobacteria was the major group in both clone libraries at phylum level. DUW clone library contained 80.0% Proteobacteria, 8.0% Bacteroides, 4.0% Nitrospira, 4.0% Firmicutes, 2.0% Planctomycetes and 2.0% Acidobacteria. On the other hand, human saliva (HS) clone library contained 55.5% Proteobacteria, 36.1% Firmicutes and 8.4% Bacteroides. The majority of bacteria identified belonged to phylum Proteobacteria in both samples. In dental unit water system (DUW), Alphaproteobacteria was detected as the major group. There was no evidence of the bacterial contamination due to a dental treatment. Most sequences were related to microorganisms derived from biofilm in oligotrophic environments.

• 생명과학회지
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• 제10권1호
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• pp.52-60
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• 2000

Up to now, there have been done much efforts in regard to nitrate reductase activity (NRA) of dicotyledonous herbs and important crop monocotyledons, but few to wild plants having canopy structure such as Carex. The objective of the present study are to determine: a) the optimum in vivo NR assay conditions for leaf samples of Carex species, b) changes of NRA according to section within leaf and leaf ages, c) diurnal variations. Optimized assay media of each Carex species were determined. NRA of C. rostrata adapted to oligotrophic habitats is readily saturated at lower substrate concentration than those of C. distans and C. gracilis, adapted to meso- and eutrophic habitats, respectively. All Carex species investigated have higher NRA in leaves than in roots. NRA of all species showed maximal values at the middle section of each leaf and in the youngest fully expanded leaves. Compared to C. gracilis, NR in leaves of C. distans was adapted readily to the light period. On the whole, Carex showed rather delayed diurnal variation. Even if the in vivo nitrate reductase assay based on nitrite estimation does not give an accurate estimation of total nitrate reduced, it still serves as a useful tool to find out relative differences in varying environmental conditions. Additionally, in vivo RNA measurements are helpful to understand nitrate reduction and basic nitrogen metabolism of Carex species having different canopy structure.

• 한국패류학회지
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• 제29권3호
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• pp.245-250
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• 2013

We investigated the factors of mass-mortality in terms of water temperature and prey, in order to prevent the mass-mortality of cultured oysters at Gamak Bay in Yeosu City in 2007. The real-time water temperature was recorded as high, 28 to 31C, during late August. Nutrients, Dissolved Inorganic Nitrogen (DIN) and Dissolved Inorganic Phosphate (DIP) were downed in September. The analyzed results of chlorophyll a content were 0.78-1.50 ${\mu}gL^{-1}$ and phytoplankton for food resources was 81 cells $mL^{-1}$, both were low. The finding here indicate that Gamak Bay is in an oligotrophic state. The mass-mortality of cultured oysters occurred 43.6% in Gamak Bay. The mortality rate of oyster were above 67.0%, at Wanpo, however, it was showed 18.3% at Gumchun. Therefore, we believe the mass-mortality of cultured oysters at Gamak Bay comes from the destruction of bio-rhythms due to high water temperature and quantitatively and qualitatively decreasing food resources due to the limitation of nutrients.

• 한국해양생명과학회지
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• 제6권1호
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• pp.9-22
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• 2021

We determined the composition of water and sediment bacterial assemblages from the East Sea using 16S rRNA gene sequencing. Total bacterial reads were greater in surface waters (<100 m) than in deep seawaters (>500 m) and sediments. However, total OTUs, bacterial diversity, and evenness were greater in deep seawaters than in surface waters with those in the sediment comparable to the deep sea waters. Proteobacteria was the most dominant bacterial phylum comprising 67.3% of the total sequence reads followed by Bacteriodetes (15.8%). Planctomycetes, Verrucomicrobia, and Actinobacteria followed all together consisting of only 8.1% of the total sequence. Candidatus Pelagibacter ubique considered oligotrophic bacteria, and Planctomycetes copiotrophic bacteria showed an opposite distribution in the surface waters, suggesting a potentially direct competition for available resources by these bacteria with different traits. The bacterial community in the warm surface waters were well separated from the other deep cold seawater and sediment samples. The bacteria exclusively associated with deep sea waters was Actinobacteriacea, known to be prevalent in the deep photic zone. The bacterial group Chromatiales and Lutibacter were those exclusively associated with the sediment samples. The overall bacterial community showed similarities in the horizontal rather than vertical direction in the East Sea.

• Fisheries and Aquatic Sciences
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• 제25권10호
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• pp.499-516
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• 2022

Endobiotic microalgae inhabit various groups of organisms, including bivalves. In this group, the association between the giant molluscs Tridacna and Symbiodinium is one of the most recognizable. This consortium allows hydrobionts to survive in oligotrophic waters by regulating their metabolism. The available research has provided an understanding of the interaction and adaptation of these symbionts, but the problem of the beginning of the formation of these relationships remains unresolved. In the case of Tridacninae, symbiosis is essential for the survival of bivalves, in contrast to representatives of the Mytilidae and the Coccomyxa found in them. A few works devoted mainly to the morphological aspects of invasion have shown that endobiont causes inflammation and pathology. Having data to clarify the exact "diagnosis" of the interaction of these organisms is not enough. It is possible that the relationship between bivalves and Coccomyxa is in the early stages of being established, which may lead to mutualism or parasitism in the future. We assume that the analysis of works on the symbiosis of Symbiodinium and bivalves will facilitate the course of research for the less studied Coccomyxa and their hosts. By postulating the Coccomyxa represent a unique evolutionary model for the formation of a symbiotic system, it is possible to use this system to study the interaction of organisms during their initial contact. The identified signalling pathways and mechanisms that allow the photobionts to evade host immunity can be useful for constructing new forms of symbiosystems.

• Ocean and Polar Research
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• 제44권2호
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• pp.139-145
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• 2022

Manganese nodules were recovered within the deep subseafloor sediments (118.22 mbsf) at Site U1371 during International Ocean Discovery Program (IODP) expedition 329 from the South Pacific Gyre (SPG). Because most manganese nodules exist on the seabed surface, nodules present in deep sediments are uncommon. Therefore, the growth origin of manganese nodules was identified through mineralogical and geochemical analyses. The manganese nodule was divided into the concentric layer outside the manganese region and the inner part of the phosphatized region consisting of manganese oxide minerals and carbonate fluorapatite (CFA) minerals, respectively. The two-dimensional element distribution analysis of Mn, Co, Ni, Sr and Cu, Zn with low Mn/Fe ratio confirmed that manganese nodules were formed predominantly by a hydrogenetic process and a biogenic process in certain manganese layers. As a result, the manganese nodule was continuously precipitated in SPG environments of oligotrophic open paleoocean conditions and rapidly buried with siliceous ooze sediments when the SPG changed to a eutrophic environment. It has been confirmed that manganese nodules found within deep subseafloor sediments could be used as a new proxy for the reconstruction of paleooceanographic conditions.

• Journal of Species Research
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• 제13권1호
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• pp.89-99
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• 2024

Larger benthic foraminifera (LBF) are a group of marine organisms that inhabit oligotrophic subtropicaltropical photic zones, commonly possess relatively large shells (i.e., tests) with a complex internal structure and host photosynthetic endosymbionts. In this study, we provide a new report of a LBF species belonging to the genus Sorites Ehrenberg, 1839, with a brief description and images of the test. The sediment samples were collected by SCUBA diving from the east coast of Jeju Island (South Korea). The discoidal test shape and annular series of chamberlets with a single row of apertures surrounded by rim indicate that these specimens belong to the genus Sorites, and this is the first record of the genus in Korea. The arrangement of early chamberlets, septular disposition, and the aperture details suggest that the specimens can be assigned to Sorites orbiculus(Forsskål in Niebuhr, 1775). Only three LBF species, including the present species, have been reported from Korean waters. The present study provides additional information for the evaluation of foraminiferal diversity including LBF in Korea and suggests the necessity of continuous investigations to understand the diversity of Sorites species in Korea.

• Journal of Microbiology and Biotechnology
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• 제27권4호
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• pp.825-833
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• 2017

Strain IMCC26207 was isolated from the surface layer of Lake Soyang in Korea by the dilutionto-extinction culturing method, using a liquid medium prepared with filtered and autoclaved lake water. The strain could neither be maintained in a synthetic medium other than natural freshwater medium nor grown on solid agar plates. Phylogenetic analysis of 16S rRNA gene sequences indicated that strain IMCC26207 formed a distinct lineage in the order Acidimicrobiales of the phylum Actinobacteria. The closest relative among the previously identified bacterial taxa was "Candidatus Microthrix parvicella" with 16S rRNA gene sequence similarity of 91.7%. Here, the draft genome sequence of strain IMCC26207, a freshwater actinobacterium, is reported with the description of the genome properties and annotation summary. The draft genome consisted of 10 contigs with a total size of 3,316,799 bp and an average G+C content of 57.3%. The IMCC26207 genome was predicted to contain 2,975 protein-coding genes and 51 non-coding RNA genes, including 45 tRNA genes. Approximately 76.8% of the protein coding genes could be assigned with a specific function. Annotation of the IMCC26207 genome showed several traits of adaptation to living in oligotrophic freshwater environments, such as phosphorus-limited condition. Comparative genomic analysis revealed that the genome of strain IMCC26207 was distinct from that of "Candidatus Microthrix" strains; therefore, we propose the name "Candidatus Limnosphaera aquatica" for this bacterium.

• ALGAE
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• 제32권2호
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• pp.139-153
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• 2017

The ability of a red tide species to take up nutrients is a critical factor affecting its red tide dynamics and species competition. Nutrient uptake by red tide species has been conventionally measured by incubating nutrient-depleted cells for a short period at 1 or 2 light intensities. This method may be applicable to certain conditions under which cells remain in oligotrophic water for a long time and high nutrients are suddenly introduced. Thus, a new method should be developed that can be applicable to the conditions under which cells are maintained in eutrophicated waters in healthy conditions and experience light and dark cycles and different light intensities during vertical migration. In this study, a new repletion method reflecting these conditions was developed. The nitrate uptake rates of the red tide dinoflagellate Prorocentrum micans originally maintained in nitrate repletion and depletion conditions as a function of nitrate concentration were measured. With increasing light intensity from 10 to $100{\mu}E\;m^{-2}s^{-1}$, the maximum nitrate uptake rate ($V_{max}$) of P. micans increased from 3.6 to $10.8 pM\;cell^{-1}d^{-1}$ and the half saturation constant ($K_{s-NO3}$) increased from 4.1 to $6.9{\mu}M$. At $20{\mu}E\;m^{-2}s^{-1}$, the $V_{max}$ and $K_{s-NO3}$ of P. micans originally maintained in a nitrate repletion condition were similar to those maintained in a nitrate depletion condition. Thus, differences in cells under nutrient repletion and depletion conditions may not affect $K_{s-NO3}$ and $V_{max}$. Moreover, different light intensities may cause differences in the nitrate uptake of migratory phototrophic dinoflagellates.