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Genetic Variation and Polymorphism in Rainbow Trout, Oncorhynchus mykiss Analysed by Amplified Fragment Length Polymorphism

  • Yoon, Jong-Man;Yoo, Jae-Young;Park, Jae-Il
    • Journal of Aquaculture
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    • v.17 no.1
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    • pp.69-80
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    • 2004
  • The objective of the present study was to analyze genetic distances, variation and characteristics of individuals in rainbow trout, Oncorhynchus mykis using amplified fragment length polymorphism (AFLP) method as molecular genetic technique, to detect AFLP band patterns as genetic markers, and to compare the efficiency of agarosegel electrophoresis (AGE) and polyacrylamide gel electrophoresis (PAGE), respectively. Using 9 primer combinations, a total of 141 AFLP bands were produced, 108 bands (82.4%) of which were polymorphic in AGE. In PAGE, a total of 288 bands were detected, and 220 bands (76.4%) were polymorphic. The AFLP fingerprints of AGE were different from those of PAGE. Separation of the fragments with low molecular weight and genetic polymorphisms revealed a distinct pattern in the two gel systems. In the present study, the average bandsharing values of the individuals between two populations apart from the geographic sites in Kangwon-do ranged from 0.084 to 0.738 of AGE and PAGE. The bandsharing values between individuals No.9 and No. 10 showed the highest level within population, whereas the bandsharing values between individuals No.5 and No.7 showed the lowest level. As calculated by bandsharing analysis, an average of genetic difference (mean$\pm$SD) of individuals was approximately 0.590$\pm$0.125 in this population. In AGE, the single linkage dendrogram resulted from two primers (M11+H11 and M13+H11), indicating six genetic groupings composed of group 1 (No.9 and 10), group 2 (No. 1, 4, 5, 7, 10, 11, 16 and 17), group 3 (No. 2, 3, 6, 8, 12, 15 and 16), group 4 (No.9, 14 and 17), group 5 (No. 13, 19, 20 and 21) and group 6 (No. 23). In AGE, the genetic distances among individuals of between-population ranged from 0.108 to 0.392. In AGE, the shortest genetic distance (0.108) displaying significant molecular differences was between individuals No.9 and No. 10. Especially, the genetic distance between individuals No. 23 and the remnants among individuals within population was highest (0.392). Additionally, in the cluster analysis using the PAGE data, the single linkage dendrogram resulted from two primers (M12+H13 and M11+H13), indicating seven genetic groupings composed of group 1 (No. 15), group 2 (No. 14), group 3 (No. 11 and 12), group 4 (No.5, 6, 7, 8, 10 and 13), group 5 (No.1, 2, 3 and 4), group 6 (No.9) and group 7 (No. 16). By comparison with the individuals in PAGE, genetic distance between No. 10 and No. 7 showed the shortest value (0.071), also between No. 16 and No. 14 showed the highest value (0.242). As with the PAGE analysis, genetic differences were certainly apparent with 13 of 16 individuals showing greater than 80% AFLP-based similarity to their closest neighbor. The three individuals (No. 14, No. 15 and No. 16) of rainbow trout between two populations apart from the geographic sites in Kangwon-do formed distinct genetic distances as compared with other individuals. These results indicated that AFLP markers of this fish could be used as genetic information such as species identification, genetic relationship or analysis of genome structure, and selection aids for genetic improvement of economically important traits in fish species.

Simultaneous Removal of $NO_x$ and $SO_2$ through the Combination of Sodium Chlorite Powder and Carbon-based Catalyst at Low Temperature ($NaClO_2(s)$와 탄소 분산형 촉매를 이용한 저온에서의 $NO_x$$SO_2$ 동시 제거)

  • Byun, Young-Chul;Lee, Ki-Man;Koh, Dong-Jun;Shin, Dong-Nam
    • Journal of Korean Society of Environmental Engineers
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    • v.33 no.1
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    • pp.39-46
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    • 2011
  • NO oxidation is an important prerequisite step to assist the selective catalytic reduction (SCR) at low temperatures ($<200^{\circ}C$). Therefore, we conducted the lab- and bench-scales experiments appling the sodium chlorite powder ($NaClO_2(s)$) for the oxidation of NO to $NO_2$ and the carbon-based catalyst for the reduction of $NO_x$ and $SO_2$; the lab- and bench-scales experiments were conducted in laboratory and iron-ore sintering plant, respectively. In the lab-scale experiment, known concentrations of $NO_x$ (200 ppm), $SO_2$ (75 ppm), $H_2O$ (10%) and $NH_3$ (400 ppm) in 2.6 L/min were introduced into a packed-bed reactor containing $NaClO_2(s)$, then gases produced by the reaction with $NaClO_2(s)$ were fed into the carbon-based catalyst (space velocity = $2,000hr^{-1}$) at $130^{\circ}C$. In the bench-scale experiment, flue gases of $50Nm^3/hr$ containing 120 ppm NO and 150 ppm $SO_2$ were taken out from the duct of iron-ore sintering plant, then introduced into the flow reactor; $NaClO_2(s)$ were injected into the flow reactor using a screw feeder. Gases produced by the reaction with $NaClO_2(s)$ were introduced into the carbon-based catalyst (space velocity = $1,000hr^{-1}$). Results have shown that, in both lab- and bench-scales experiments, NO was oxidized to $NO_2$ by $NaClO_2(s)$. In addition, above 90% of $NO_x$ and $SO_2$ removal were obtained at the carbon-based catalyst. These results lead us to suggest that the combination of $NaClO_2(s)$ with the carbon-based catalyst has the potential to achieve the simultaneous removal of $NO_x$ and $SO_2$ at low temperature ($<200^{\circ}C$).

Isolation and Culture Conditions of a Pseudomonas Strain Capable of Removing $NH_4^+\;and\; NO_3^-$ Simultaneously in Anaerobic Conditions (혐기성 상태에서 암모니움 이온과 질산성 질소를 제거하는 미생물의 분리 및 배양조건)

  • Kim Young-Ju;Song Young Chae;Kim Jong Oh;Park Hung-Suck
    • Microbiology and Biotechnology Letters
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    • v.33 no.1
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    • pp.65-69
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    • 2005
  • A bacterial strain AE-1-3, isolated from soil and wastewater identified as Pseudomonas strain, removed $NH_4^+\;and\; NO_3^-$ simultaneously in anaerobic cultivation in a medium containing $0.1\%\;NH_4NO_3\;and\;3.0\%$ glucose. The strain removed $NH_4^+\;,\;NO_3^-\;and\;NO_2^-$ completely in 15 days of anaerobic cultivation. Though N03- removed completely, $33\%\;of\;NH_4^+$ remained in 15 day of incubation in $1\%$ glucose and $0.1\%\;NH_4NO_3$ medium. The bacterium could remove $0.1\%\;NH_4NO_3$ completely in a short time by addition of $Cu^{2+},\;Zn^{2+},\;Sn^{2+}\;in\;0.5\%$ glucose medium. By chaning the metal concentration, $0.3\%\;NH_4NO_3$ could be removed completely.

The Influence of Fermentation Conditions on the Formation of Acid and Alcohol by Some Yeast Strains (몇가지 효모(酵母)의 산(酸) 및 알콜생성(生成)에 미치는 발효조건(醱酵條件)의 영향(影響))

  • Park, Yoon-joong;Sohn, Cheon-bae
    • Korean Journal of Agricultural Science
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    • v.4 no.2
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    • pp.173-177
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    • 1977
  • These experiments were conducted to investigate the formation of organic acid and ethanol during fermentation by three yeast strains. One of these was industrial strain (No.7) from Japan, and the others were wild types (No. 47, No. 239) isolated from Takju-mash and Strawbery, respectively. Conditions of fermentation were varied by differing the supply of oxygen (air), and by using different fermentation media The results obtained were as follows: 1) All the yeast strains produced higher amount of total organic acid and ethanol under the conditions which were aerobic, i.e. the flasks were opened during fermentation, than in case of using the flasks with fermentation bung. 2) Organic acid and ethanol were produced rapidly in the mash medium than in the semi-synthetic medium, i.e. total amount of organic acid and ethanol was maximized in a short time in the mash medium. 3) On the mash medium, the highest amount of organic acid was obtained by the strain No. 239, the next by No. 7 and the lowest by No. 47. Ethanol was produced on this medium with decreacing order of No. 47, No. 239, and No. 7. 4) The strain No. 239 was proved to be a powerful organic acid producer, yielding higher amount of organic acid especially under the aerobic conditions. 5) Above results suggests that the strain No. 239 could be of useful in alcoholic drink industry, due to its powerful ethanol-producing characteristic accompaning with high yielding of organic acids.

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A Study on the Parallel Routing in Hybrid Optical Networks-on-Chip (하이브리드 광학 네트워크-온-칩에서 병렬 라우팅에 관한 연구)

  • Seo, Jung-Tack;Hwang, Yong-Joong;Han, Tae-Hee
    • Journal of the Institute of Electronics Engineers of Korea SD
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    • v.48 no.8
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    • pp.25-32
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    • 2011
  • Networks-on-chip (NoC) is emerging as a key technology to overcome severe bus traffics in ever-increasing complexity of the Multiprocessor systems-on-chip (MPSoC); however traditional electrical interconnection based NoC architecture would be faced with technical limits of bandwidth and power consumptions in the near future. In order to cope with these problems, a hybrid optical NoC architecture which use both electrical interconnects and optical interconnects together, has been widely investigated. In the hybrid optical NoCs, wormhole switching and simple deterministic X-Y routing are used for the electrical interconnections which is responsible for the setup of routing path and optical router to transmit optical data through optical interconnects. Optical NoC uses circuit switching method to send payload data by preset paths and routers. However, conventional hybrid optical NoC has a drawback that concurrent transmissions are not allowed. Therefore, performance improvement is limited. In this paper, we propose a new routing algorithm that uses circuit switching and adaptive algorithm for the electrical interconnections to transmit data using multiple paths simultaneously. We also propose an efficient method to prevent livelock problems. Experimental results show up to 60% throughput improvement compared to a hybrid optical NoC and 65% power reduction compared to an electrical NoC.

Conversion of NOx by Plasma-hydrocarbon Selective Catalytic Reduction Process (플라즈마-탄화수소 선택적 촉매환원공정을 이용한 질소산화물 저감 연구)

  • Jo, Jin-Oh;Mok, Young Sun
    • Applied Chemistry for Engineering
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    • v.29 no.1
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    • pp.103-111
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    • 2018
  • A plasma-catalytic combined process was used as an attempt to improve the conversion efficiency of nitrogen oxides ($NO_x$) over a wide temperature range ($150{\sim}500^{\circ}C$) to cope with the exhaust gas whose temperature varies greatly. Since the catalytic $NO_x$ reduction is effective at high temperatures where the activity of the catalyst itself is high, the $NO_x$ reduction was carried out without plasma generation in the high temperature region. On the other hand, in the low temperature region, the plasma was created in the catalyst bed to make up for the decreased catalytic activity, thereby increasing the $NO_x$ conversion efficiency. Effects of the types of catalysts, the reaction temperature, the concentration of the reducing agent (n-heptane), and the energy density on $NO_x$ conversion efficiency were examined. As a result of comparative analysis of various catalysts, the catalytic $NO_x$ conversion efficiency in the high temperature region was the highest in the case of the $Ag-Zn/{\gamma}-Al_2O_3$ catalyst of more than 90%. In the low temperature region, $NO_x$ was hardly removed by the hydrocarbon selective reduction process, but when the plasma was generated in the catalyst bed, the $NO_x$ conversion sharply increased to about 90%. The $NO_x$ conversion can be maintained high at temperatures of $150{\sim}500^{\circ}C$ by the combination of plasma in accordance with the temperature change of the exhaust gas.

Anti-Inflammatory Effects of Vegetable Soup in Murine Macrophage RAW 264.7 Cells (야채스프의 RAW 264.7 세포에서 항염증 효과)

  • Sim, Jae-Geun;Lee, Jae-Hyeok;Shin, Tae-Yong;Shin, Hye-Young;Jeong, Sook-Hee;Kim, Mi-Hye;Ku, Ho-Jun;Park, Jeong-Suk
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.39 no.8
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    • pp.1097-1101
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    • 2010
  • The aim of the present study is to investigate the anti-inflammatory effect of a vegetable soup (VS). The present study was designed to determine the effect of the vegetable soup on pro-inflammatory factors such as NO, iNOS and TNF-$\alpha$ in lipopolysaccharide (LPS)-stimulated RAW 264.7 macrophages. The cell toxicity was determined by MTS assay. To evaluate the anti-inflammatory effect of vegetable soup, amount of NO was measured using the NO detection kit and the iNOS expression was measured by reverse transcriptase polymerase chain reaction (RT-PCR). Also, proinflammatory cytokines were measured by ELISA kit. The results showed that the vegetable soup reduced NO, iNOS and TNF-$\alpha$ production without cytotoxicity. Our results suggest that the vegetable soup may have an anti-inflammatory property through suppressing inflammatory mediator productions and appears to be useful to develop the functional food realted to anti-inflammation.

Relationships between pH, $NO_3{^-}$ and $PO{_4}^{3-}$ and phytoplankton distribution in the upper stream of Dorim-cheon (도림천 상류의 pH, $NO_3{^-}$, $PO{_4}^{3-}$와 식물성 플랑크톤 분포와의 관계)

  • Kim, Jae Geun;Kim, Taehyeon;Yoo, Jimin;Lee, Juyeon
    • Journal of Wetlands Research
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    • v.14 no.2
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    • pp.255-263
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    • 2012
  • The stream has various environments and they are serving as main habitats of aquatic organisms. The distribution of phytoplankton is affected by water environment, especially pH, nitrogen and phosphorus. To reveal the relationship between phytoplankton distribution and water environment, we measured pH, $NO_3{^-}$ and $PO{_4}^{3-}$ concentration, and abundance of phytoplankton at 10 sites in the upper stream of Dorim-cheon. pH value ranged 5.05 to 7.56. $NO_3{^-}$ and $PO{_4}^{3-}$ concentrations ranged 0.4 ~ 4.9ppm and 0.02 ~ 0.99ppm, respectively. A point source of $NO_3{^-}$ was Seoul National University but concentration was not high and dropped to normal range at 400m downstream. $NO_3{^-}/PO{_4}^{3-}$ ratio ranged 28 to 152 except site 4 (0.4) where was affected by $PO{_4}^{3-}$ point source. Water pH, $NO_3{^-}$ and $PO{_4}^{3-}$ concentrations increased with downstream and were related to the input of irrigation water from Han-river between site 5 and 6. Bacillariophyceae alge dominated this stream. Phytoplankton density increased abruptly at downstream of site 5. In general, phytoplankton density did not increase until the $NO_3{^-}$ concentration of 3.5ppm and $PO{_4}^{3-}$ concentration of 0.07ppm. Phytoplankton density was low at sites where $NO_3{^-}/PO{_4}^{3-}$ ratio was larger than 50.

Effects of Fucoidan on Nitric Oxide Production and Activator Protein-1 Activation in Lipopolysaccharide-Stimulated Porcine Peripheral Blood Mononuclear Cells (LPS로 자극한 돼지 말초혈액 단핵구세포의 Nitric Oxide (NO) 생산 및 Activator Protein-1 (AP-1) 활성화에 있어 Fucoidan의 효과)

  • Park, Jongchan;Ahn, Changhwan;Kang, Byeong-Teck;Kang, Ji-Houn;Jeung, Eui-Bae;Yang, Mhan-Pyo
    • Journal of Veterinary Clinics
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    • v.32 no.4
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    • pp.289-294
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    • 2015
  • Fucoidan which is sulfated polysaccharide extracted from brown seaweed has a wide variety of internal biological activities. The objectives of this study were to examine the effect of fucoidan on nitric oxide (NO) production in lipopolysaccharide (LPS)-stimulated porcine peripheral blood mononuclear cells (PBMCs) and to investigate whether this effect is involved in the expression of inducible nitric oxide synthase (iNOS) and the activation of activator portein-1 (AP-1). The levels of NO production and AP-1 activity in the culture supernatants from porcine PBMCs were measured by the enzyme-linked immunosorbent assay and the levels of iNOS and AP-1 mRNA were determined by real time polymerase chain reaction. Fucoidan in LPS-naïve PBMCs has no effects on the production of NO and activity of AP-1. Expressions of iNOS and AP-1 mRNA in LPS-naïve PBMCs were also not affected by treatment of fucoidan. However, NO production, AP-1 activity and expressions of iNOS and AP-1 mRNA were dramatically increased in PBMCs stimulated with LPS. Enhancing effects of NO production and AP-1 activity in PBMCs induced by LPS were reduced by addition of fucoidan. Fucoidan also inhibited an increase in expressions of iNOS and AP-1 mRNA in LPS-stimulated PBMCs. These results suggested that fucoidan exerts anti-inflammatory effect by down-regulating production of NO via suppressing expression of iNOS and activity of AP-1 in LPS-stimulated porcine PBMCs.

The Emission of NO2 and NH3 in Selective Catalytic Reduction over Manganese Oxide with NH3 at Low Temperature (망간계 금속산화물을 이용한 저온 선택적 촉매 환원 반응에서 NO2와 NH3 배출)

  • Kim, Sung Su;Hong, Sung Chang
    • Applied Chemistry for Engineering
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    • v.18 no.3
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    • pp.255-261
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    • 2007
  • The catalytic behavior of the manganese oxides was studied for the selective catalytic reduction with ammonia at a low temperature condition under $200^{\circ}C$. Outlet unreacted ammonia increases with decreasing temperature and increasing $NH_3/NOx$ mole ratio, however $NO_2$ shows an opposite result. $NO_2$ is generated by the adsorption of NO on the catalyst and the following oxidization to nitrates. Unreacted NH3 slip is not observed even at the $NH_3/NOx$ feed ratio above 1.0 due to the reaction between formed nitrates on the catalyst and adsorbed ammonia. The addition of Zr increases $NO_2$ generation, whereas the addition of CeO2 on the catalyst decreases $NO_2$ generation. Furthermore, the additon of the metal oxide induce DeNOx efficiency to reduce.