• Title/Summary/Keyword: Multiple Matrix

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Identification of Two Novel Amalgaviruses in the Common Eelgrass (Zostera marina) and in Silico Analysis of the Amalgavirus +1 Programmed Ribosomal Frameshifting Sites

  • Park, Dongbin;Goh, Chul Jun;Kim, Hyein;Hahn, Yoonsoo
    • The Plant Pathology Journal
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    • v.34 no.2
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    • pp.150-156
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    • 2018
  • The genome sequences of two novel monopartite RNA viruses were identified in a common eelgrass (Zostera marina) transcriptome dataset. Sequence comparison and phylogenetic analyses revealed that these two novel viruses belong to the genus Amalgavirus in the family Amalgaviridae. They were named Zostera marina amalgavirus 1 (ZmAV1) and Zostera marina amalgavirus 2 (ZmAV2). Genomes of both ZmAV1 and ZmAV2 contain two overlapping open reading frames (ORFs). ORF1 encodes a putative replication factory matrix-like protein, while ORF2 encodes a RNA-dependent RNA polymerase (RdRp) domain. The fusion protein (ORF1+2) of ORF1 and ORF2, which mediates RNA replication, was produced using the +1 programmed ribosomal frameshifting (PRF) mechanism. The +1 PRF motif sequence, UUU_CGN, which is highly conserved among known amalgaviruses, was also found in ZmAV1 and ZmAV2. Multiple sequence alignment of the ORF1+2 fusion proteins from 24 amalgaviruses revealed that +1 PRF occurred only at three different positions within the 13-amino acid-long segment, which was surrounded by highly conserved regions on both sides. This suggested that the +1 PRF may be constrained by the structure of fusion proteins. Genome sequences of ZmAV1 and ZmAV2, which are the first viruses to be identified in common eelgrass, will serve as useful resources for studying evolution and diversity of amalgaviruses.

Solution Methods for OD Trip Estimation in Stochastic Assignment (확률적 통행배정하에서 기종점 통행량추정 모형의 개발)

  • Im, Yong-Taek
    • Journal of Korean Society of Transportation
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    • v.24 no.4 s.90
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    • pp.149-159
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    • 2006
  • Traditional trip tables are estimated through large-scale surveys such as household survey, roadside interviews, and license Plate matching. These methods are, however, expensive and time consuming. This paper presents two origin-destination (OD) trip matrix estimation methods from link traffic counts in stochastic assignment, which contains perceived errors of drivers for alternatives. The methods are formulated based on the relation between link flows and OD demands in logit formula. The first method can be expressed to minimize the difference between observed link flows and estimated flows, derived from traffic assignment and be solved by gradient method. The second method can be formulated based on dynamic process, which nay describe the daily movement patterns of drivers and be solved by a recursive equation. A numerical example is used for assessing the methods, and shows the performances and properties of the models.

The Anti-Proliferation Effects and Its Mechanism of Bupleurum falcatum on Human Mesangial Cell (시호의 사구체 메산지움 세포 증식억제 효능 및 작용기전 연구)

  • Lee, Byung-Cheol;Ahn, Young-Min;Doo, Ho-Kyung;Ahn, Se-Young
    • The Journal of Internal Korean Medicine
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    • v.25 no.4
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    • pp.9-17
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    • 2004
  • Objective : Mesangial cell proliferation and excessive accumulation of extracellular matrix (ECM) proteins is the common pathologic feature of glomerulosclerosis, and platelet-derived growth factor (PDGF) BB-chain, transforming growth factor betal $(TGF-{\beta}1)$, cyclin dependent kinases (CDK) and CDK inhibitors mediated in these pathophysiological processes. Bupleurum falcatum which is one of the most widely used components in traditional oriental medicines, has multiple pharmacological effects, such as antipyretic, analgesic, immune modulating, anti-inflammatory, anti-allergic, anti-thrombotic, anti-atherosclerotic, and antitussive effects. Methods : In this study, we evaluated the influence of Bupleurum falcatum on mesangial cell proliferation, DNA synthesis and expression of PDGF-BB chain, $TGF-{\beta}1$, CDKI, CDK2, CDK4, p21 and p27 in fetal bovine serum (FBS)-activated human mesangial cell. Results : Bupleurum falcatum reduced the mesangial cell proliferation and DNA synthesis more than control and captopril. And in the ELISA analysis of $TGF-{\beta}1$, and RT-PCR of PDGF-BB chain, CDK1, CDK2, CDK4, p21, and p27, Bupleurum falcatum inhibited the expression of $TGF-{\beta}1$ protein and PDGF-BB, CDK1, CDK2 gene and promoted that of p21 gene in a dose-dependent manner in comparing with control and captopril. Conclusions: These results suggest that Bupleurum falcatum may inhibit the mesangial cell proliferation and DNA synthesis by regulation of PDGF-BB and $TGF-{\beta}1$ expressions, and by modulation of CDK1, CDK2 and p21 expression.

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Effect of Tempering Treatment on Mechanical Properties of Ausformed Martensite in Fe-30% Ni-0.35%C Alloy (Fe-30%Ni-0.35%C 합금에서 Ausformed Martensite의 기계적 성질에 미치는 Tempering처리의 영향)

  • Lee, E.K.;Lee, K.B.;Kim, H.S.
    • Journal of the Korean Society for Heat Treatment
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    • v.7 no.1
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    • pp.44-52
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    • 1994
  • In order to investigate the effect of tempring treatment on the mechanical properties of ausformed martensite in Fe-30%Ni-0.35%C alloy, the hardness, yield strength and elongation were examined by tensile test. 1. The strength of deformed austenite in Fe-30%Ni-0.35%C alloy was increased due to the work hardening induced from the dislocation density increased during deformation. The strength of ausformed martensite was increased because of defects inherited from deformed austenite by martensitic transformation. 2. The ductility of ausformed martensite was shown a nearly constant values independent of deformation degrees because of the interaction of multiple factors such as increased retained austenite, formation of void and decrement of twin in ausformed martensite. 3. The strength of ausformed martensite by tempering treatment was shown a little decrement up to $340^{\circ}C$, especially showed remarkable softening resistance in higher deformation degrees. 4. Virgin martensite and ausformed martensite were shown a maximum yield strength by clustering in tempering at $100^{\circ}C$ and above $100^{\circ}C$, yield strength was very small decreased due to the decrement of solute carbon by the destruction of clustering. 5. The decomposition of retained austenite was not shown up to $450^{\circ}C$ in ausformed martensite with tempering treatment, and the matrix was rapidly softening because of the decomposition of martensite and the formation of reversed austenite with tempering above $400^{\circ}C$.

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Data visualization of airquality data using R software (R 소프트웨어를 이용한 대기오염 데이터의 시각화)

  • Oh, Youngchang;Park, Eunsik
    • Journal of the Korean Data and Information Science Society
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    • v.26 no.2
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    • pp.399-408
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    • 2015
  • This paper presented airquality data through data visualization in several ways and described its characteristics related to statistical methods for analysis. Software R was used for visualization tools. The airquality data was measured in New York city from May to September of year 1973. First, simple, exploratory data analysis was done in terms of both data visualization and analysis to find out univariate characteristics. Then through data transformation and multiple regression analysis, model for describing the airquality level was found. Also, after some data categorization, overall feature of the data was explored using box plot and three-dimensional perspective drawing and scatter plot.

Effect of Mori Follium Extract on the Melanogenesis and Skin Fibril Matrix (상엽(桑葉) 추출물의 미백활성 및 피부섬유구조 형성에 미치는 효과)

  • Kwon, O Jun
    • The Korea Journal of Herbology
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    • v.31 no.5
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    • pp.41-46
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    • 2016
  • Objectives : The Skin is composed of multiple layers, including the epidermis, dermis, and hypodermis. It provides a vital barrier structure that protects vertebrates from external environmental antigens, solvents, ultraviolet light, microorganisms, toxins, and weather conditions. Although several biological effects of Mori Follium have been reported, beneficial effects of Mori Follium in skin health remain unclear. In this study, we prepared water extract of Mori Follium (MLE) and evaluated the effects on melanin accumulation and expression levels of skin fibril-related proteins.Methods : The cytotoxicities of MLE in B16F10 melanoma and human skin fibroblasts (HSF) were examined by MTT assay. Inhibitory effect of MLE on the α-MSH- and IBMX-induced melanosis in B16F10 melanoma was examined. The expression levels of fibronectin, collagen 1α2, and CCN2 in MLE-treated HSF were analyzed by reverse transcription-polymer chain reaction (RT-PCR) and western blotting.Results : The MLE treatment for 24 h did not affect to the B16F10 and HSF at concentrations of 1, 10, 50, 100, 200, 400 and 800 ㎍/ml. The MLE treatment for 72 h significantly and dose dependently suppressed melanin accumulation in B16F10 melanoma. In addition, the MLE treatment up-regulated expression levels of skin fibril-related genes such as fibronectin, collagen 1α2, and CCN2 in HSF. Our western blot analysis revealed MLE-induced up-regulation of skin fibril-related genes required the activation of CCN2 protein.Conclusions : In conclusion, these findings suggest that the MLE could be used in development of cosmetic natural material of maintaining healthy skin.

Design and Analysis of Mach-Zehnder-Interferometer-Based Silica Planar Lightwave Circuit Triplexer (마하젠더 간섭계로 구성된 실리카 평판 광 도파회로 트라이플렉서의 설계 및 분석)

  • Lee, Tae-Hyung;Lee, Dong-Hyun;Chung, Young-Chul
    • Korean Journal of Optics and Photonics
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    • v.18 no.6
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    • pp.447-451
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    • 2007
  • A triplexer based on a silica planar lightwave circuit Mach-Zehnder nterferometer(MZI) is proposed and its characteristics are analyzed through simulations. To separate 1310 nm band and $1480{\sim}1560nm$ band properly, the path length difference of an MZI is set to be the multiple and half of the wavelength 1310 nm and the balance of the directional coupler is optimized in the $1480{\sim}1560nm$ band. The same MZI is additionally cascaded to provide good crosstalk characteristics. The 1490 nm band and 1550 nm band are further separated using additional two stage MZI's. A three-dimensional BPM and transfer matrix method analysis predicts the low crosstalk characteristics and the fabrication-error-tolerance of the proposed triplexer.

Comparative Effect of Plant Growth Regulators on Callus Induction and Plant Regeneration in Glehnia littoralis Schmidt et Miquiel (갯방풍(Glehnia littoralis Schmidt et Miquiel)에서 캘러스 유도 및 식물체 재분화에 미치는 생장조절제의 효과)

  • 이병국;한미숙;정양균;나의식;윤성중;유남희
    • Korean Journal of Plant Resources
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    • v.17 no.2
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    • pp.153-160
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    • 2004
  • Glehnia littoralis is known as an edible and medicinal plant using green loaves and mature roots of plant. In the present paper, the influence of plant growth regulators on callus induction and plant regeneration was investigated. Callus induction and regeneration occurred from leaf and petiole explants in Glehnia littoralis. Optimal condition of plant growth regulators for callus induction from leaf and petiole explants was MS basal medium supplemented with 2mg/L 2,4-D and 2mg/L BA. The frequency of callus induction was higher in petiole explant than leaf. When the callus was cultured on MS basal medium supplemented with 0∼1 mg/L IAA, 0∼1mg/L NAA and 0∼2mg/L BA for about 65 days, the most effective plant growth regulators on plant regeneration from callus were 1mg/L NAA and 2mg/L BA. The plantlets acclimatized successfully and grown in vermiculite matrix.

DOA Estimation of Multiple Signal and Adaptive Beam-forming for Mobile Communication Environments (이동통신 환경에서 다중신호의 DOA 추정과 적응 빔성형)

  • Yang, Doo-Yeong;Lee, Min-Soo
    • The Journal of the Korea Contents Association
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    • v.10 no.12
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    • pp.34-42
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    • 2010
  • The DOA(direction of arrival), which is based on parametric and nonparametric estimation algorithm, and adaptive beamforming algorithm for mobile communication environments are researched and analyzed. In parametric estimation algorithm, eigenvalues of the signal component and the noise component are obtained from correlation matrix of received signal by array antenna and power spectrum of the received signal is discriminated from them. Otherwise, in nonparametric estimation algorithm, we minimize a regularized objective function for finding a estimate of the signal energy as a function of angle, using nonquadratic norm which leads to supper resolution and noise suppression. And then, DOA is estimated by the signal and noise spatial steering vector, and adaptive beam-forming pattern is improved by weight vectors obtained from the spatial vector. Therefore, the improved directional estimation algorithm with regularizing sparsity constraints offers super-resolution and noise suppression compared to other algorithms.

Oral Administration of Lactobacillus plantarum HY7714 Protects Hairless Mouse Against Ultraviolet B-Induced Photoaging

  • Kim, Hyun Mee;Lee, Dong Eun;Park, Soo Dong;Kim, Yong-Tae;Kim, Yu Jin;Jeong, Ji Woong;Jang, Sung Sik;Ahn, Young-Tae;Sim, Jae-Hun;Huh, Chul-Sung;Chung, Dae Kyun;Lee, Jung-Hee
    • Journal of Microbiology and Biotechnology
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    • v.24 no.11
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    • pp.1583-1591
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    • 2014
  • Ultraviolet (UV) irradiation alters multiple molecular pathways in the skin, thereby inducing skin damage, including photoaging. In recent years, probiotics have gained interest due to their beneficial effects on skin health, such as inhibiting atopic dermatitis and improving skin immunity or inflammation. However, little is known about the effects of probiotics on UVB-induced photoaging. In this study, we evaluated the effect of Lactobacillus plantarum HY7714 against UVB-induced photoaging in human dermal fibroblasts and hairless mice. The results showed that L. plantarum HY7714 treatment effectively rescued UVB-reduced procollagen expression through the inhibition of UVB-induced matrix metalloproteinase (MMP)-1 expression in human dermal fibroblasts. Data from a western blot showed that L. plantarum HY7714 inhibited the phosphorylation of Jun N-terminal kinase, thereby suppressing the UVB-induced phosphorylation and expression of c-Jun. Oral administration of L. plantarum HY7714 clearly inhibited the number, depth, and area of wrinkles in hairless mouse skin. Histological data showed that L. plantarum HY7714 significantly inhibited UVB-induced epidermal thickness in mice. Western blot and zymography data also revealed that L. plantarum HY7714 effectively inhibited MMP-13 expression as well as MMP-2 and -9 activities in dermal tissue. Collectively, these results provide further insight regarding the skin biological actions of L. plantarum HY7714, a potential skin anti-photoaging agent.