• 제목/요약/키워드: Molecule Structure

검색결과 575건 처리시간 0.025초

Hydrogen sulfide, a gaseous signaling molecule, elongates primary cilia on kidney tubular epithelial cells by activating extracellular signal-regulated kinase

  • Han, Sang Jun;Kim, Jee In;Lipschutz, Joshua H.;Park, Kwon Moo
    • The Korean Journal of Physiology and Pharmacology
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    • 제25권6호
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    • pp.593-601
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    • 2021
  • Primary cilia on kidney tubular cells play crucial roles in maintaining structure and physiological function. Emerging evidence indicates that the absence of primary cilia, and their length, are associated with kidney diseases. The length of primary cilia in kidney tubular epithelial cells depends, at least in part, on oxidative stress and extracellular signal-regulated kinase 1/2 (ERK) activation. Hydrogen sulfide (H2S) is involved in antioxidant systems and the ERK signaling pathway. Therefore, in this study, we investigated the role of H2S in primary cilia elongation and the downstream pathway. In cultured Madin-Darby Canine Kidney cells, the length of primary cilia gradually increased up to 4 days after the cells were grown to confluent monolayers. In addition, the expression of H2S-producing enzyme increased concomitantly with primary cilia length. Treatment with NaHS, an exogenous H2S donor, accelerated the elongation of primary cilia whereas DL-propargylglycine (a cystathionine γ-lyase inhibitor) and hydroxylamine (a cystathionine-β-synthase inhibitor) delayed their elongation. NaHS treatment increased ERK activation and Sec10 and Arl13b protein expression, both of which are involved in cilia formation and elongation. Treatment with U0126, an ERK inhibitor, delayed elongation of primary cilia and blocked the effect of NaHS-mediated primary cilia elongation and Sec10 and Arl13b upregulation. Finally, we also found that H2S accelerated primary cilia elongation after ischemic kidney injury. These results indicate that H2S lengthens primary cilia through ERK activation and a consequent increase in Sec10 and Arl13b expression, suggesting that H2S and its downstream targets could be novel molecular targets for regulating primary cilia.

Structural Requirements for Modulating 4-Benzylpiperidine Carboxamides from Serotonin/Norepinephrine Reuptake Inhibitors to Triple Reuptake Inhibitors

  • Paudel, Suresh;Kim, Eunae;Zhu, Anlin;Acharya, Srijan;Min, Xiao;Cheon, Seung Hoon;Kim, Kyeong-Man
    • Biomolecules & Therapeutics
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    • 제29권4호
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    • pp.392-398
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    • 2021
  • In this study, we determined the effect of 24 different synthetic 4-benzylpiperidine carboxamides on the reuptake of serotonin, norepinephrine, and dopamine (DA), and characterized their structure-activity relationship. The compounds with a two-carbon linker inhibited DA reuptake with much higher potency than those with a three-carbon linker. Among the aromatic ring substituents, biphenyl and diphenyl groups played a critical role in determining the selectivity of the 4-benzylpiperidine carboxamides toward the serotonin transporter (SERT) and dopamine transporter (DAT), respectively. Compounds with a 2-naphthyl ring were found to exhibit a higher degree of inhibition on the norepinephrine transporter (NET) and SERT than those with a 1-naphthyl ring. A docking simulation using a triple reuptake inhibitor 8k and a serotonin/norepinephrine reuptake inhibitor 7j showed that the regions spanning transmembrane domain (TM)1, TM3, and TM6 form the ligand binding pocket. The compound 8k bound tightly to the binding pocket of all three monoamine reuptake transporters; however, 7j showed poor docking with DAT. Co-expression of DAT with the dopamine D2 receptor (D2R) significantly inhibited DA-induced endocytosis of D2R probably by reuptaking DA into the cells. Pretreatment of the cells with 8f, which is one of the compounds with good inhibitory activity on DAT, blocked DAT-induced inhibition of D2R endocytosis. In summary, this study identified critical structural features contributing to the selectivity of a molecule for each of the monoamine transporters, critical residues on the compounds that bound to the transporters, and the functional role of a DA reuptake inhibitor in regulating D2R function.

Synthesis of Alkylidyne Complexes of Br$(CO)_2(tmeda)M{\equiv}CC_{6}H_{4}Me$ (M = Cr, Mo, W). Crystal Structure of Br$(CO)_2(tmeda)M{\equiv}CC_{6}H_{4}Me$

  • Park, Joon T.;Cho, Jeong-Ju;Suh, Il-Hwan;Lee, Jin-Ho;Lim, Sung-Su;Ryu, Bo-Young
    • Bulletin of the Korean Chemical Society
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    • 제14권2호
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    • pp.266-271
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    • 1993
  • The reaction of $(CO_5$)M=C(OMe)Tol (M=Cr, Mo, W and $Tol=p-C_6H_4Me)$ and $BBr_3$ followed by treatment with tetramethylethylenediamine (TMEDA) yields a mixture of two diastereomers, trans, $cis-Br(CO)_2(tmeda)M{\equiv}$CTol [M=Cr(1a), Mo(2a), W(3a)] and cis, $trans-Br(CO)_2(tmeda)M{\equiv}$CTol [M=Cr(1b), Mo(2b), W(3b)], respectively. These compounds have been isolated as crystalline solids and characterized by spectroscopic (infrared, mass, $^1H$ and $^{13}C-NMR)$ data. The trans, cis-Br(CO)2(tmeda)Cr${\equiv}$CTol (1a), has been examine via a single crystal X-ray diffraction study : $BrCrO_2N_2C_{16}H_{23}$, Mr=407.27, triclinic, $P{\bar{1}},\;a=12.792(2),\;b=13.400(5),\;c= 11.645(4)\;{\AA},\;{\alpha}=101.26(2)^{\circ},\;{\beta}=103.04(2)^{\circ},\;{\gamma}=91.88(2)^{\circ},\;{\nu}=1907(1){\AA}^3,\;Z=2,\;{\rho}(calcd)=1.418\;gcm^{-3},\;{\lambda}(MoK{\alpha})=0.71069\;{\AA},\;{\mu}=26.25 cm^{-1},\;F(000)=831.97,\;T=295K,\;R=0.0977$ for 1332 significant reflections $[F_0>5{\sigma}(F_0)]$. There are two essentially equivalent molecules in the crystallographic asymmetric unit. Each molecule is octahedral with the bromide ligand trans to the alkylidyne carbon, the two cis-carbonyl ligands, and the bidentate TMEDA ligand.

Efonidipine Inhibits JNK and NF-κB Pathway to Attenuate Inflammation and Cell Migration Induced by Lipopolysaccharide in Microglial Cells

  • Nguyen, Ngoc Minh;Duong, Men Thi Hoai;Nguyen, Phuong Linh;Bui, Bich Phuong;Ahn, Hee-Chul;Cho, Jungsook
    • Biomolecules & Therapeutics
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    • 제30권5호
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    • pp.455-464
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    • 2022
  • Efonidipine, a calcium channel blocker, is widely used for the treatment of hypertension and cardiovascular diseases. In our preliminary study using structure-based virtual screening, efonidipine was identified as a potential inhibitor of c-Jun N-terminal kinase 3 (JNK3). Although its antihypertensive effect is widely known, the role of efonidipine in the central nervous system has remained elusive. The present study investigated the effects of efonidipine on the inflammation and cell migration induced by lipopolysaccharide (LPS) using murine BV2 and human HMC3 microglial cell lines and elucidated signaling molecules mediating its effects. We found that the phosphorylations of JNK and its downstream molecule c-Jun in LPS-treated BV2 cells were declined by efonidipine, confirming the finding from virtual screening. In addition, efonidipine inhibited the LPS-induced production of pro-inflammatory factors, including interleukin-1β (IL-1β) and nitric oxide. Similarly, the IL-1β production in LPS-treated HMC3 cells was also inhibited by efonidipine. Efonidipine markedly impeded cell migration stimulated by LPS in both cells. Furthermore, it inhibited the phosphorylation of inhibitor kappa B, thereby suppressing nuclear translocation of nuclear factor-κB (NF-κB) in LPS-treated BV2 cells. Taken together, efonidipine exerts anti-inflammatory and anti-migratory effects in LPS-treated microglial cells through inhibition of the JNK/NF-κB pathway. These findings imply that efonidipine may be a potential candidate for drug repositioning, with beneficial impacts on brain disorders associated with neuroinflammation.

자화수를 사용한 주입재의 역학적 특성에 관한 연구 (A Study on the Mechanical Properties of Grout Materials Using a Magnetic Field Treated Water)

  • 천병식;양형철;이상영
    • 한국지반공학회논문집
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    • 제22권7호
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    • pp.65-72
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    • 2006
  • 본 연구는 배합수를 일반수 대신 자화수로 사용한 시멘트 그라우트재의 역학적 특성을 파악하는 것에 그 목적이 있다. Magnetic field를 통과한 물을 MFTW라 하는데, 이는 시멘트의 Bleeding 감소와 Freezing에 대한 저항을 향상시킴으로써 시멘트 사용량을 5% 절감시킬 수 있다고 알려져 있다. MFTW는 자기력에 의해 물 분자를 좀 더 작게 만들어서 물 분자의 활성도를 증가시켜 좀 더 쉽게 시멘트 분자의 Core Region으로 침투할 수 있게 함으로써 수화를 원활하게 한다. 결과적으로, MFTW는 좀 더 효율적인 수화를 일으키게 함으로써 콘크리트의 일축압축강도를 크게 향상시켰으며, 규산나트륨-시멘트그라우트재에 MFTW를 사용한 결과 일축압축강도가 약 $20{\sim}50%$ 증가되었음을 알 수 있었다.

액정 후보 물질로서 C16H16O3의 분자구조 및 전하이동성 특성분석에 관한 연구 (Theoretical investigation for the molecular structure and Charge transport property analysis of C16H16O3 as a candidate of liquid-crystal)

  • 박혜민;김승준
    • 분석과학
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    • 제20권1호
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    • pp.61-69
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    • 2007
  • $C_{16}H_{16}O_3$의 중성분자, 음이온, 그리고 양이온에 대하여 양자역학적 방법을 사용하여, 분자구조, 진동주파수 그리고 HOMO-LUMO 차이와 재편성에너지(reorganization energy)를 통한 전하이동성 특성을 연구하였다. 분자구조는 $B3LYP/6-311G^{**}$ 수준까지 최적화 하여 안정한 구조를 찾았다. 또한 진동주파수를 계산하여 안정한 상태의 분자구조를 확인하였으며, 액정의 전하이동성 특성을 분석하기 위해서 HOMO-LUMO 에너지 차이와 재편성에너지를 계산하였다. $C_{16}H_{16}O_3$의 HOMO-LUMO 에너지 차이는 중성분자의 경우 4.45 eV, 음이온과 양이온에 대해서는 각각 1.46 eV, 1.53 eV로 계산되었고, 재편성에너지는 음이온의 경우 0.59 eV, 그리고 양이온의 경우 0.43 eV로 계산되었다.

액정분자 배향용 원스텝 브러시 코팅으로 유도된 이방성 TiSrYZrO 박막 (Anisotropic TiSrYZrO Thin Films Induced by One-step Brush Coating for Liquid Crystal Molecular Orientation)

  • 오병윤
    • 한국정보전자통신기술학회논문지
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    • 제17권3호
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    • pp.146-154
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    • 2024
  • 본 논문에서는 액정디스플레이 산업에서 러빙공정의 대안으로 브러시 모(brush hair)를 이용한 편리한 액정분자 정렬 방식을 제시합니다. 졸겔 공정을 이용해서 타이타늄 스트론튬 이트륨 지르코늄 산화물(TiSrYZrO) 용액을 제조하였고, 원스텝(one-step) 브러시 코팅 공정을 통해 TiSrYZrO 배향막 제조와 액정분자 배향을 통합하였다. 경화온도가 높아짐에 따라 액정 셀의 액정분자 정렬 상태가 향상되었고, 코팅 표면의 brush hair 움직임에 의한 전단 응력에 기인하는 물리적 표면 이방성 구조 형성으로 인해 균일한 액정분자 정렬을 유도하였다. 균일하고 균질한 액정분자 정렬은 편광 광학 현미경과 선경사 각 측정을 통해 확인하였다. X-선 광전자 분광법으로 열산화를 통해 금속산화물로 잘 형성된 TiSrYZrO 박막을 확인하였고, 우수한 광학 투명성이 있음을 검증하였다. 이러한 결과로부터 러빙공정의 대안으로 brush hair를 이용한 편리한 액정분자 정렬 방식이 실행 가능한 차세대 기술이 될 것이라고 기대된다.

As a Modulator, Multitasking Roles of SIRT1 in Respiratory Diseases

  • Yunxin Zhou;Fan Zhang;Junying Ding
    • IMMUNE NETWORK
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    • 제22권3호
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    • pp.21.1-21.21
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    • 2022
  • As far the current severe coronavirus disease 2019 (COVID-19), respiratory disease is still the biggest threat to human health. In addition, infectious respiratory diseases are particularly prominent. In addition to killing and clearing the infection pathogen directly, regulating the immune responses against the pathogens is also an important therapeutic modality. Sirtuins belong to NAD+-dependent class III histone deacetylases. Among 7 types of sirtuins, silent information regulator type-1 (SIRT1) played a multitasking role in modulating a wide range of physiological processes, including oxidative stress, inflammation, cell apoptosis, autophagy, antibacterial and antiviral functions. It showed a critical effect in regulating immune responses by deacetylation modification, especially through high-mobility group box 1 (HMGB1), a core molecule regulating the immune system. SIRT1 was associated with many respiratory diseases, including COVID-19 infection, bacterial pneumonia, tuberculosis, and so on. Here, we reviewed the latest research progress regarding the effects of SIRT1 on immune system in respiratory diseases. First, the structure and catalytic characteristics of SIRT1 were introduced. Next, the roles of SIRT1, and the mechanisms underlying the immune regulatory effect through HMGB1, as well as the specific activators/inhibitors of SIRT1, were elaborated. Finally, the multitasking roles of SIRT1 in several respiratory diseases were discussed separately. Taken together, this review implied that SIRT1 could serve as a promising specific therapeutic target for the treatment of respiratory diseases.

말의 융모성 성선자극 호르몬의 생화학적 기능 (On the Biological Functions of Equine Chorionic Gonadotropin)

  • 민관식;윤종택
    • 한국가축번식학회지
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    • 제26권3호
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    • pp.299-308
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    • 2002
  • eCG(말 융모성성선자극 호르몬)$\beta$와 eLH(말 황체형성호르몬)$\beta$는 하나의 유전자로 코드 되어 있으며, eCG와 eLH는 당쇄의 구조에 있어서 차이가 있는데, LH는 sulfate가 CG는 sialylate가 수식되어 있다. eCG는 다른 동물에 있어서 강력한 FSH (난포자극)와 LH의 이중활성을 나타내어 아주 특이하고, 많은 탄수화물로 수식되어 있는 당단백질 호르몬이다. eCG의 이러한 이중활성은 성선 자극호르몬의 구조, 기능 및 수용체와 이들 호르몬과의 특이결합에 대하여 분자 생물학적인 관점에서 연구하는데 아주 흥미롭다 따라서, eCG는 당쇄의 구조와 생화학적인 기능에서 아주 특이한 분자이다. 이러한 중요점을 당쇄첨가부위의 돌연변이를 통하여 분석한 결과, LH의 활성에서는 eCG$\alpha$의 56번 당쇄가 필수불가결한 역할을 하지만, eCG$\beta$의 카르복실기 말단의 O-linked 당쇄는 중요하지 않은 것으로 관찰되었다. 한편, N- 및 O-linked 당쇄 모두는 FSH활성에는 중요한 기능을 가지고 있는데, 양쪽 당쇄의 제거는 오히려 FSH 활성을 증가시켰다. 따라서, eCG의 LH와 FSH의 이중활성은 $\alpha$의 N-linked 당쇄의 제거와, $\beta$의 O-linked 당쇄를 제거함으로써 완전히 분리할 수 있으며, eCG에 있어서 당쇄는 생화학적 활성에 대하여 아주 중요하게 작용한다는 새로운 사실이 밝혀졌다. 단일체인 eCG($\beta$의 C-terminal에 u를 연결한)도 eCG$\alpha$/$\beta$ 및 천연형 eCG와 비교한 결과 효율적으로 분비되어지고 완전한 LH와 FSH 활성을 나타내었다. 이러한 결과들은 eCG 분자에 있어서 지금까지 문제시되어왔던 LH활성을 나타내지 않고, 높은 FSH 활성만을 나타내는 특이한 모델을 만들 수가 있으며, 현재 단일체인 분자에 있어서 당쇄의 기능에 대한구축은 각 단체의 결합, 분비에 영향을 미치는 당쇄 돌연변이 연구에 아주 유용할 것으로 사료된다.

Biological Functions of N- and O-linked Oligosaccharides of Equine Chorionic Gonadotropin and Lutropin/Chorionicgonadotropin Receptor

  • Min, K. S.
    • 한국동물번식학회:학술대회논문집
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    • 한국동물번식학회 2000년도 국제심포지움
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    • pp.10-12
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    • 2000
  • Members of the glycoprotein family, which includes CG, LH, FSH and TSH, comprise two noncovalently linked $\alpha$- and $\beta$-subunits. Equine chorionic gonadotropin (eCG), known as PMSG, has a number of interesting and unique characteristics since it appears to be a single molecule that possesses both LH- and FSH-like activities in other species than the horse. This dual activity of eCG in heterologous species is of fundamental interest to the study of the structure-function relationships of gonadotropins and their receptors. CG and LH $\beta$ genes are different in primates. In horse, however, a single gene encodes both eCG and eLH $\beta$-subunits. The subunit mRNA levels seem to be independently regulated and their imbalance may account for differences in the quantities of $\alpha$ - and $\beta$ -subunits in the placenta and pituitary. The dual activities of eCG could be separated by removal of the N-linked oligosaccharide on the $\alpha$-subunit Asn 56 or CTP-associated O-linked oligosaccharides. The tethered-eCG was. efficiently secreted and showed similar LH-like activity to the dimeric eCG. Interestingly, the FSH-like activity of the tethered-eCG was increased markedly in comparison with the native and wild type eCG. These results also suggest that this molecular can implay particular models of FSH-like activity not LH-like activity in the eCG/indicate that the constructs of tethered molecule will be useful in the study of mutants that affect subunit association and/or secretion. A single-chain analog can also be constructed to include additional hormone-specific bioactive generating potentially efficacious compounds that have only FSH-like activity. The LH/CG receptor (LH/CGR), a membrane glycoprotein that is present on testicular Leydig cells and ovarian theca, granulosa, luteal, and interstitial cells, plays a pivotal role in the regulation of gonadal development and function in males as well as in nonpregnant and pregnant females. The LH/CGR is a member of the family of G protein-coupled receptors and its structure is predicted to consist of a large extracellular domain connected to a bundle of seven membrane-spanning a-helices. The LH/CGR phosphorylation can be induced with a phorbol ester, but not with a calcium ionophore. The truncated form of LHR also was down-regulated normally in response to hCG stimulation. In contrast, the cell lines expressing LHR-t63I or LHR-628, the two phosphorylation-negative receptor mutant, showed a delay in the early phase of hCG-induced desensitization, a complete loss of PMA-induced desensitization, and an increase in the rate of hCG-induced receptor down-regulation. These results clearly show that residues 632-653 in the C-terminal tail of the LHR are involved in PMA-induced desensitization, hCG-induced desensitization, and hCG-induced down-regulation. Recently, constitutively activating mutations of the receptor have been identified that are associated with familial male-precocious puberty. Cells expressing LHR-D556Y bind hCG with normal affinity, exhibit a 25-fold increase in basal cAMP and respond to hCG with a normal increase in cAMP accumulation. This mutation enhances the internalization of the free and agonist-occupied receptors ~2- and ~17-fold, respectively. We conclude that the state of activation of the LHR can modulate its basal and/or agonist-stimulated internalization. Since the internalization of hCG is involved in the termination of hCG actions, we suggest that the lack of responsiveness detected in cells expressing LHR-L435R is due to the fast rate of internalization of the bound hCG. This statement is supported by the finding that hCG responsiveness is restored when the cells are lysed and signal transduction is measured in a subcellular fraction (membranes) that cannot internalize the bound hormone.

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