• Title/Summary/Keyword: Module sequence

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Integrated Network System of Milk Cow Stock-Farming Facilities for Stockbreeding Management (사양관리를 위한 젖소 목장 시설 통합 네트웍 시스템)

  • 김지홍;이수영;김용준;한병성;김동원
    • Journal of Animal Environmental Science
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    • v.8 no.3
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    • pp.199-208
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    • 2002
  • This paper introduces the method to make management network about milking cow farm tasks. The object of this research was to design of biological measuring system and managing network system in a livestock farm. This auto-management system provides informations about individual cows' temperature, conductivity of milk and weight for efficient management of feeding, and milking works by a micro-processor and RS -485 type serial COM. ports. And measured bio-data which are basic informations for remote raising management are saved to user PC by serial communication between the PLC and user PC. Milking cow farm is divided into three working place to each measurement work and feed. The first working place is milking station which has two thermometers, a conduct meter and a scale set. The second working place is feeding station, and the third place is cattle cage. These are combined by network system and the PLC which is used to drive network and sub-modules. Sub-modules have a micro-process to control the sensor and to interface with network. The PLC which drive network and control sequence has two serial communication port to be linked with user PC for sending the measured data and for receiving data. Above all, in this study tells the sequence operating method by the driving scenario of breeding milk cow for livestock auto-management using the PLC and network system.

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A Eukaryotic Gene Structure Prediction Program Using Duration HMM (Duration HMM을 이용한 진핵생물 유전자 예측 프로그램 개발)

  • Tae, Hong-Seok;Park, Gi-Jeong
    • Korean Journal of Microbiology
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    • v.39 no.4
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    • pp.207-215
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    • 2003
  • Gene structure prediction, which is to predict protein coding regions in a given nucleotide sequence, is the most important process in annotating genes and greatly affects gene analysis and genome annotation. As eukaryotic genes have more complicated stuructures in DNA sequences than those of prokaryotic genes, analysis programs for eukaryotic gene structure prediction have more diverse and more complicated computational models. We have developed EGSP, a eukaryotic gene structure program, using duration hidden markov model. The program consists of two major processes, one of which is a training process to produce parameter values from training data sets and the other of which is to predict protein coding regions based on the parameter values. The program predicts multiple genes rather than a single gene from a DNA sequence. A few computational models were implemented to detect signal pattern and their scanning efficiency was tested. Prediction performance was calculated and was compared with those of a few commonly used programs, GenScan, GeneID and Morgan based on a few criteria. The results show that the program can be practically used as a stand-alone program and a module in a system. For gene prediction of eukaryotic microbial genomes, training and prediction analysis was done with Saccharomyces chromosomes and the result shows the program is currently practically applicable to real eukaryotic microbial genomes.

A Prefetching and Memory Management Policy for Personal Solid State Drives (개인용 SSD를 위한 선반입 및 메모리 관리 정책)

  • Baek, Sung-Hoon
    • The KIPS Transactions:PartA
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    • v.19A no.1
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    • pp.35-44
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    • 2012
  • Traditional technologies that are used to improve the performance of hard disk drives show many negative cases if they are applied to solid state drives (SSD). Access time and block sequence in hard disk drives that consist of mechanical components are very important performance factors. Meanwhile, SSD provides superior random read performance that is not affected by block address sequence due to the characteristics of flash memory. Practically, it is recommended to disable prefetching if a SSD is installed in a personal computer. However, this paper presents a combinational method of a prefetching scheme and a memory management that consider the internal structure of SSD and the characteristics of NAND flash memory. It is important that SSD must concurrently operate multiple flash memory chips. The I/O unit size of NAND flash memory tends to increase and it exceeded the block size of operating systems. Hence, the proposed prefetching scheme performs in an operating unit of SSD. To complement a weak point of the prefetching scheme, the proposed memory management scheme adaptively evicts uselessly prefetched data to maximize the sum of cache hit rate and prefetch hit rate. We implemented the proposed schemes as a Linux kernel module and evaluated them using a commercial SSD. The schemes improved the I/O performance up to 26% in a given experiment.

Driver Route Choice Models for Developing Real-Time VMS Operation Strategies (VMS 실시간 운영전략 구축을 위한 운전자 경로선택모형)

  • Kim, SukHee;Choi, Keechoo;Yu, JeongWhon
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.26 no.3D
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    • pp.409-416
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    • 2006
  • Real-time traveler information disseminated through Variable Message Signs (VMS) is known to have effects on driver route choice decisions. In the past, many studies have attempted to optimize the system performance using VMS message content as the primary control variable of driver route choice. This research proposes a VMS information provision optimization model which searches the best combination of VMS message contents and display sequence to minimize the total travel time on a highway network considered. The driver route choice models under VMS information provision are developed using a stated preference (SP) survey data in order to realistically capture driver response behavior. The genetic algorithm (GA) is used to find the optimal VMS information provision strategies which consists of the VMS message contents and the sequence of message display. In the process of the GA module, the system performance is measured using micro traffic simulation. The experiment results highlight the capability of the proposed model to search the optimal solution in an efficient way. The results show that the traveler information conveyed via VMS can reduce the total travel time on a highway network. They also suggest that as the frequency of VMS message update gets shorter, a smaller number of VMS message contents performs better to reduce the total travel time, all other things being equal.

Modular Building Construction Process Development by Benchmarking International Best Practices (선진 사례 벤치마킹을 통한 국내 모듈러 건축 시공 프로세스 제안)

  • Shin, HyunKyu;Ahn, YongHan
    • Korean Journal of Construction Engineering and Management
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    • v.17 no.6
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    • pp.3-12
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    • 2016
  • The purpose of this study is to provide a domestic applicable modular building construction process by benchmarking international best practices. In this study, we derive the risk factors that may occur in performing a modular construction projects and the modular construction management factors through case analysis. In order to effectively respond to risks in performing a modular building projects, we propose the modular building construction process which is separated by a transportation, lifting, assembly steps based on the unit module construction sequence. It is the key to providing management information and guidelines for the design, production, construction participants by reflecting the information for each step in the process. This study would prevent a potential hazard which may occur in the construction process. Consequently, It could result in saving the entire cost of modular construction project as shortening the project schedule and could improve workability of modular construction.

A Study on the Identification Technique and Prevention of Combustion Diffusion through ESS (Energy Storage System) Battery Fire Case (ESS (에너지 저장장치) 배터리 화재사례를 통한 감식기법 및 연소 확산방지에 관한 연구)

  • Lee, Jung-Il
    • Journal of the Society of Disaster Information
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    • v.16 no.2
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    • pp.383-391
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    • 2020
  • Purpose: To identify internal self ignition and ignition caused by external flames in energy storage rooms, and to analyze the difference between ignition due to overheating and ignition caused by external heat sources. Method: membrane melting point measurement, battery external hydrothermal experiment, battery overcharge experiment, comparative analysis of electrode plate during combustion by overcharge and external heat, overcharge combustion characteristics, external hydrothermal fire combustion characteristics, 3.4 (electrode plate comparison) / 3.5 (overcharge) /3.6 (external sequence) analysis experiment. Result: Since the temperature difference was very different depending on the position of the sensor until the fire occurred, it is judged that two temperature sensors per module are not enough to prevent the fire through temperature control in advance. Conclusion: The short circuit acts as an ignition source and ignites the mixed gas, causing a gas explosion. The electrode breaks finely due to the explosion pressure, and the powder-like lithium oxide is sparked like a firecracker by the flame reaction.

GEDA: New Knowledge Base of Gene Expression in Drug Addiction

  • Suh, Young-Ju;Yang, Moon-Hee;Yoon, Suk-Joon;Park, Jong-Hoon
    • BMB Reports
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    • v.39 no.4
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    • pp.441-447
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    • 2006
  • Abuse of drugs can elicit compulsive drug seeking behaviors upon repeated administration, and ultimately leads to the phenomenon of addiction. We developed a procedure for the standardization of microarray gene expression data of rat brain in drug addiction and stored them in a single integrated database system, focusing on more effective data processing and interpretation. Another characteristic of the present database is that it has a systematic flexibility for statistical analysis and linking with other databases. Basically, we adopt an intelligent SQL querying system, as the foundation of our DB, in order to set up an interactive module which can automatically read the raw gene expression data in the standardized format. We maximize the usability of this DB, helping users study significant gene expression and identify biological function of the genes through integrated up-to-date gene information such as GO annotation and metabolic pathway. For collecting the latest information of selected gene from the database, we also set up the local BLAST search engine and non-redundant sequence database updated by NCBI server on a daily basis. We find that the present database is a useful query interface and data-mining tool, specifically for finding out the genes related to drug addiction. We apply this system to the identification and characterization of methamphetamine-induced genes' behavior in rat brain.

Cloning and Expression of a Novel Chitosanase Gene (choK) from $\beta$-Proteobacterium KNU3 by Double Inverse PCR

  • Yi, Jae-Hyoung;Lee, Keun-Eok;Choi, Shin-Geon
    • Journal of Microbiology and Biotechnology
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    • v.14 no.3
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    • pp.563-569
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    • 2004
  • The DNA sequence of the chitosanase gene (choK) from $\beta$-Proteobacterium KNU3 showed an 1,158-bp open reading frame that encodes a protein of 386 amino acids with a novel 74 signal peptide. The degenerated primers based on the partial deduced amino acid sequences from MALDI- TOF MS analyses yielded the 820 bp of the PCR product. Based on this information, double inverse PCR cloning experiments, which use the two specific sets of PCR primers rather than single set primers, identified the unknown 1.2 kb of the choK gene. Subsequently, a 1.8 kb of full choK gene was cloned from another PCR cloning experiment and it was then subcloned into pGEM T-easy and pUC18 vectors. The recombinant E. coli clone harboring recombinant pUC18 vector produced a clear halo around the colony in the glycol chitosan plates. The recombinant ChoK protein was secreted into medium in a mature form while the intracellular ChoK was produced without signal peptide cleavage. The activity staining of PAGE showed that the recombinant ChoK protein was identical to the chitosanase of wild-type. The comparison of deduced amino acid sequences of choK revealed that there is 92% identity with that of Sphingobacterium multivorum chitosanase. Judging from the conserved module in other bacterial chitosanases, chitosanase of KNU3 strain (ChoK) belongs to the family 80 of glycoside hydrolases.

Identification of Candidate SNP (Single Nucleotide Polymorphism) for Growth and Carcass Traits Related to QTL on Chromosome 6 in Hanwoo (Korean Cattle)

  • Lee, Y.S.;Lee, J.H.;Lee, J.Y.;Kim, J.J.;Park, H.S.;Yeo, J.S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.21 no.12
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    • pp.1703-1709
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    • 2008
  • As genetic markers, single nucleotide polymorphisms (SNP) are very appropriate for the development of genetic tests for economic traits in livestock. Several microsatellite markers have been identified as useful markers for the genetic improvement of Hanwoo. Among those markers, ILSTS035 was recently mapped at a similar position with four SNPs (AH1_11, AH1_9, 31465_446, and 12273_165) in a linkage map of EST-based SNP in BAT6. Among the four SNPs, two SNPs (31465_446 and 12273_165) were analyzed using BLAST at the NCBI web site. The sequences including the 12273_165 SNP were identified at the intron region within the LOC534614 gene on the gene sequence map (Bos taurus NCBI Map view, build 3.1). The LOC534614 gene represents a protein similar to myosin heavy chain, fat skeletal muscle, embryonic isoform 1 in the dog, and myosin_1 (Myosin heavy chain D) in Macaca mulatta. In cattle, the myosin heavy chain was associated with muscle development. The phenotypic data for growth and carcass traits in the 415 animals were analyzed by the mixed ANCOVA (analysis of covariance) linear model using PROC GLM module in SAS v9.1. By the genotyping of Hanwoo individuals (n = 415) to evaluate the association of SNP with growth and carcass traits, it was shown that the 12273_165 SNP region within LOC534614 may be a candidate marker for growth. The results of the statistical analyses suggested that the genotype of the 12273_165 SNP significantly affected birth weight, weight of the cattle at 24 months of age, average daily gain and carcass cold weight (p<0.05). Consequently, the 12273_165 SNP polymorphisms at the LOC534614 gene may be associated with growth in Hanwoo, and functional validation of polymorphisms in LOC534614 should be performed in the future.

Gene Cloning, Expression, and Characterization of a $\beta$-Agarase, AgaB34, from Agarivorans albus YKW-34

  • Fu, Xiao Ting;Pan, Cheol-Ho;Lin, Hong;Kim, Sang-Moo
    • Journal of Microbiology and Biotechnology
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    • v.19 no.3
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    • pp.257-264
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    • 2009
  • A $\beta$-agarase gene, agaB34, was functionally cloned from the genomic DNA of a marine bacterium, Agarivorans albus YKW-34. The open reading frame of agaB34 consisted of 1,362 bp encoding 453 amino acids. The deduced amino acid sequence, consisting of a typical N-terminal signal peptide followed by a catalytic domain of glycoside hydrolase family 16 (GH-16) and a carbohydrate-binding module (CBM), showed 37-86% identity to those of agarases belonging to family GH-16. The recombinant enzyme (rAgaB34) with a molecular mass of 49 kDa was produced extracellularly using Escherichia coli $DH5{\alpha}$ as a host. The purified rAgaB34 was a $\beta$-agarase yielding neoagarotetraose (NA4) as the main product. It acted on neoagarohexaose to produce NA4 and neoagarobiose, but it could not further degrade NA4. The maximal activity of rAgaB34 was observed at $30^{\circ}C$ and pH 7.0. It was stable over pH 5.0-9.0 and at temperatures up to $50^{\circ}C$. Its specific activity and $k_{cat}/K_m$ value for agarose were 242 U/mg and $1.7{\times}10^6/sM$, respectively. The activity of rAgaB34 was not affected by metal ions commonly existing in seawater. It was resistant to chelating reagents (EDTA, EGTA), reducing reagents (DTT, $\beta$-mercaptoethanol), and denaturing reagents (SDS and urea). The E. coli cell harboring the pUC18-derived agarase expression vector was able to efficiently excrete agarase into the culture medium. Hence, this expression system might be used to express secretory proteins.