• 제목/요약/키워드: Mitochondrial DNA

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Identification of Meat Species Using PCR-RFLP Marker of Cytochrome b Gene

  • Shin, Sung-Chul;Chung, Ku-Young;Chung, Eui-Ryong
    • Food Science of Animal Resources
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    • v.26 no.3
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    • pp.375-379
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    • 2006
  • Food labeling regulations require that the meat species in various meat products are accurately declared to the consumer. Substitution or adulteration of costly meat with a cheaper one is one of the most common problems in the meat industry. In this study, PCR-restriction fragment length polymorphism(RFLP) method of the mitochondrial cytochrome b(mt cyt b) gene has been applied for identification of the origin of six mammalian meat species(beef, port horse, goat, mutton and deer) and three poultry meat species(chicken, turkey and duck) as raw materials for meat products. PCR was used to amplify a variable region of mt cyt b gene. Meat species differentiation was determined by digestion of the amplified products with a 359 bp fragment using HaeIII and HinfI restriction enzymes, which generated species-specific RFLP patterns. This PCR-RFLP DNA marker of mt cyt b gene could be very useful for the accurate and reliable identification and discrimination of animal meat species in routine analysis.

Molecular Identification and Morphological Development of Auxis (Scombridae) Larvae (고등어과 물치다래속(Auxis, Scombridae) 자어의 분자동정 및 형태발달)

  • Ji, Hwan-Sung;Yoo, Joon-Taek;Ryu, Jung-Hwa;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.44 no.6
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    • pp.677-683
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    • 2011
  • Eleven individual larvae (3.6-8.0 mm notochord length, NL) were collected from the southern East Sea of Korea in July, 2010, and the adjacent Sea of Jeju Island in August, 2011. Five individuals were identified using mitochondrial DNA cytochrome oxidase subunit I (COI) sequences (494 base pairs). All were identified as Auxis rochei, their mtCOI sequences being consistent with those of adult A. rochei (d=0.000), followed by Auxis thazard (d=0.027). In terms of morphology, A. rochei larvae showed a preflexion stage of 4.8 mm NL, but a flexion stage between 5.2-6.2 mm NL, and subsequently a postflexion stage between 6.6-8.0 mm NL. During the larval stage, A. rochei differed from A. thazard in having no (or few) melanophores in the lateral caudal region.

First Reliable Record of the Needle-scaled Queenfish, Scomberoides tol (Perciformes: Carangidae), from Korea (한국산 전갱이과(Carangidae) 어류 1미기록종, Scomberoides tol)

  • Kim, Kyeong-Mu;Choi, Seung-ho;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.51 no.4
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    • pp.444-449
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    • 2018
  • Two specimens of Scomberoides tol (99.0 mm and 124.5 mm in total length), belonging to the family Carangidae, order Perciformes were collected from Korean waters using a gape net with wings and a hand net between 2014 and 2017. These specimens are characterized by having the origin of the soft-rayed portion of the dorsal fin just above the origin of the soft-rayed portion of the anal fin, dorsal spines not connected by fin membranes and posterior end of the maxilla and upper jaw not extending beyond the posterior margin of the eye. A comparison of mitochondrial DNA cytochrome c oxidase subunit I sequences indicated that these specimens matched Scomberoides tol (K2P distance, d = 0.002), but differed from other Scomberoides species (6.9-9.1%). This is the first reliable report of Scomberoides tol from Korea.

Morphological and Molecular Comparison among Three Species and One Unidentified Takifugu Species (참복속(genus Takifugu) 어류 3종과 미동정 1종의 형태 및 유전학적 비교)

  • Baek, Jeong-Ik;Han, Kyeong-Ho;Lee, Seong-Hoon;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.51 no.4
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    • pp.404-410
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    • 2018
  • Takifugu rubripes, T. chinensis, T. pseudommus and an unidentified species were morphologically and genetically studied. Morphology was compared using external morphology and the genetic analysis was conducted using mitochondrial DNA cytochrome oxidase I (COI) and cytochrome b (Cyt b). The morphological characteristics of T. rubripes, T. chinensis and T. pseudommus were confirmed, as reported previously. The unidentified species was confirmed to have the characteristics of T. rubripes and T. chinensis. The COI sequences of the four species were 99-100% similar; genetic distance was d=0.0000 and Cyt b genetic distance was d=0.0000-0.00834. Species in the phylogenetic tree belonging to the same group could not be classified genetically. In conclusion, the unidentified species was considered to be a hybrid between T. rubripes and T. chinensis.

Molecular Identification and Morphological Characteristics of the Longjaw Bonefish, Albula argentea Collected in Korea (한국산 여울멸의 분자동정과 형태적 특징)

  • Kim, Maeng Jin;Kim, Byeong Yeob;Song, Choon Bok
    • Korean Journal of Ichthyology
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    • v.31 no.4
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    • pp.249-254
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    • 2019
  • One specimen of Albula argentea (296.3 mm in standard length), belonging to the family Albulidae, was collected in a set net in the coastal waters of Jejudo Island, Korea. As the adult A. argentea has not been caught from Korean waters, we described its morphological characters based on the collected specimen and compared them with those of the previous reports on A. argentea and A. koreaus. As a result, the present specimen was characterized by having 68~73 pored lateral line scales (vs. 77~78 for A. koreana), 72~73 vertebrae pored lateral line scales (vs. 77~80) and none streak on the check (vs. yellowish streak). Molecular analysis using the mitochondrial cytochrome b DNA sequences was also conducted to confirm the correctness of species identification and taxonomic status of the sample.

Sustained Viral Activity of Epstein-Barr Virus Contributes to Cellular Immortalization of Lymphoblastoid Cell Lines

  • Jeon, Jae-Pil;Nam, Hye-Young;Shim, Sung-Mi;Han, Bok-Ghee
    • Molecules and Cells
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    • v.27 no.2
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    • pp.143-148
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    • 2009
  • EBV-transformed lymphoblastoid cell lines (LCLs) are used as a resource for human genetic, immunological, and pharmacogenomic studies. We investigated the biological activity of 20 LCL strains during continuous long-term subculture up to a passage number of 160. Out of 20 LCL strains, 17 proliferated up to a passage number of 160, at which point LCLs are generally considered as "immortalized". The other three LCL strains lost the ability to proliferate at an average passage number of 41, during which these LCLs may have undergone cellular crisis. These non-immortal LCL strains exhibited no telomerase activity, decreased EBV gene expression, and a lower copy number of the EBV genome and mitochondrial DNA when compared with immortal LCLs. Thus, this study suggests that sustained EBV viral activity as well as telomerase activity may be required for complete LCL immortalization.

Molecular Identification and Morphological Description of Newly Recorded Albula glossodonta (Forsskål, 1775) (Albulidae, Albuliformes) Leptocephalus in Korea (한국산 여을멸과(여을멸목) 어류 1미기록종, Albula glossodonta (Forsskål, 1775) 엽상자어의 분자동정 및 형태기재)

  • Lee, Yeon-Myeong;Ji, Hwan-Sung;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.54 no.4
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    • pp.568-573
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    • 2021
  • A single leptocephalus specimen of Albula glossodonta belonging to the family Albulidae under the order Albuliformes, was collected from the southern sea of Korea in May 21, 2019. This species is distinguished from A. vulpes in the number of melanophores at the base of the caudal fin. In addition, our specimen was readily distinguished from A. argentea in having no melanophores on the operculum, at the base of the dorsal fin and in front of the pectoral fin. Also it was well distinguished from A. gilberti in having no melanophores on the operculum, in front of the pectoral fin and on the lateral body. A molecular analysis based on 467 bp sequences of the mitochondrial DNA 16S rRNA shows that the leptocephalus is well matched to A. glossodonta adult (K2P distance=0.002). We report the first occurrence of A. glossodonta leptocephalus in the Korean waters, and propose it's new Korean name, "Nam-bang-yeoeul-myeol".

Morphological description and molecular identification of the newly recorded bothid, Crossorhombus azureus (Bothidae, Pleuronectiformes) postlarva collected from the southern sea of Korea (한국 남해에서 채집된 둥글넙치과(가자미목) 1미기록종, Crossorhombus azureus 후기자어의 형태기재 및 분자동정)

  • SEO, Min-Ju;YU, Hyo-Jae;KIM, Jin-Koo
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.57 no.3
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    • pp.264-269
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    • 2021
  • A single postlarva (9.72 mm in standard length) specimen of Crossorhombus azureus (Alcock, 1889) belonging to the family Bothidae, was collected using a bongo net from the southern sea of Korea on December 10, 2019. This species is characterized by having spines on post basipterygial processes. It has two eyes located at the opposite side in head, which accordingly belongs to pre-metamorphosis stage. Melanophores are distributed on the dorsal and anal fin base on the right side (blind side), which is regarded as a useful identification key distinguishing C. azureus from congeneric species in their postlarval stage. A molecular analysis based on mitochondrial DNA COI sequences showed that our specimen was closely matched to adult C. azureus (K2P distance = 0.017). As there is no Korean name for the genus Crossorhombus in spite of presence of Crossorhombus kobensis and its Korean name "Go-be-dung-geul-neob-chi" in Korea, we proposed a new Korean name "Dung-geul-neob-chi-sog" for the genus Crossorhombus and "Pa-lang-dung-geul-neob-chi" for the species C. azureus.

Modulatory action of enrofloxacin in lipopolysaccharide-induced hyper-activated mouse spleen cells (Lipopolysaccharide에 의해 과활성화된 마우스 비장세포에서 Enrofloxacin의 조절작용)

  • Ko, Hyeong-Ju;Joo, Hong-Gu
    • Korean Journal of Veterinary Research
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    • v.59 no.2
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    • pp.75-80
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    • 2019
  • Enrofloxacin, a fluoroquinolone, is a broad-spectrum antibiotic widely used in veterinary medicine that inhibits the action of bacterial DNA gyrase, resulting in anti-bacterial effects. This study was performed to examine whether enrofloxacin has modulatory and anti-inflammatory activity on immune cells. A few studies have reported the anti-inflammatory effects of enrofloxacin. In this study, we used mouse spleen cells treated with lipopolysaccharide (LPS) and examined the effects of enrofloxacin. Several assays were performed in LPS-treated spleen cells after the enrofloxacin treatment. Enrofloxacin inhibited the metabolic activity and mitochondrial membrane potential of LPS-treated spleen cells significantly. On the other hand, enrofloxacin did not alter the proportion of the subsets in spleen cells, and did not induce cell death. The production of tumor necrosis factor-alpha in LPS-treated spleen cells was inhibited by enrofloxacin. Overall, enrofloxacin had modulatory activity in spleen cells treated with LPS. These data may broaden the use of enrofloxacin as an antibiotic with anti-inflammatory activity in veterinary clinics.

Ocular Sparganosis: The First Report of Spirometra ranarum in Thailand

  • Saksirisampant, Wilai;Eamudomkarn, Chatanun;Jeon, Hyeong-Kyu;Eom, Keeseon S.;Assavapongpaiboon, Buravej;Sintuwong, Sunisa;Tulvatana, Wasee
    • Parasites, Hosts and Diseases
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    • v.58 no.5
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    • pp.577-581
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    • 2020
  • A 22-year-old Thai man from the Northeast region presented with acute eye swelling, itching, and discharge on his left eye. He was suspected of having gnathostomiasis and treated with albendazole and prednisolone for 3 weeks. Nine months later, he was treated with high-dose oral prednisolone for the preliminary and differential diagnoses with thyroid-associated orbitopathy and lymphoma. He had been administered prednisolone intermittently over a few years. Then he developed a painless movable mass at the left upper eyelid and recurrent pseudotumor oculi was suspected. The surgical removal of the mass was performed. A white pseudosegmented worm revealed a definite diagnosis of ocular sparganosis by a plerocercoid larva. Molecular diagnosis of the causative species was made based on the mitochondrial cytochrome c oxidase subunit 1 (cox1) gene. Proper technique of extraction and amplification of short fragments DNA from formalin-fixed paraffin-embedded tissue successfully identified parasite species. The result from the sequencing of the PCR-amplified cox1 fragments in this study showed 99.0% sequence homology to Spirometra ranarum. This is the first report of S. ranarum in Thailand.