• Title/Summary/Keyword: Microbial species

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Variation of Microbial Communities with Crop Species in Controlled Horticultural Soils of Gyeongnam Province

  • Lee, Young-Han;Lee, Seong-Tae;Kim, Eun-Seok;Cho, Yong-Cho;Ok, Yong Sik;Kim, Min-Keun;Kim, HyeRan
    • Korean Journal of Soil Science and Fertilizer
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    • v.46 no.3
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    • pp.182-186
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    • 2013
  • In this study, we examined the chemical properties and microbial community characteristics in 25 controlled horticultural soils (CHS) sampled from Gyeongnam Province by fatty acid methyl ester (FAME) method. The electrical conductivity of watermelon CHS was significantly (p < 0.05) higher than those of red pepper CHS, pumpkin CHS, and strawberry CHS. The amounts of total FAMEs, total bacteria, gram-negative bacteria, gram-positive bacteria, and fungi were significantly (p < 0.05) higher in red pepper CHS than those in strawberry CHS and pumpkin CHS. In addition, higher (p < 0.05) ratios of cy19:0 to $18:1{\omega}7c$ were detected in tomato CHS than those in watermelon CHS, pumpkin CHS, and red pepper CHS. This implied that microbial communities of tomato CHS were stressed more than other species of cultivation soils. Actinomycetes community in red pepper CHS was significantly (p < 0.05) higher than those in tomato CHS, strawberry CHS, and watermelon CHS. Differences in soil microbial community composition were highly associated with cultivated crop species which might result from the management inputs such as fertilizer, herbicide, and irrigation.

Selection of R. japonicum Strains for Developing Soybean Inoculant and Plasmid Characterization (대두접종제(大豆接種劑) 개발(開發)을 위한 우수근류균(優秀根瘤菌)의 선발(選拔) 및 plasmid 특성(特性))

  • Kim, Chang-Jin;Kim, Sung-Hoon;Rhee, Yoon;Yoo, Ick-Dong;Mheen, Tae-Ick
    • Applied Biological Chemistry
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    • v.28 no.3
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    • pp.149-155
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    • 1985
  • 590 strains of Rhizobia were isolated from root nodules of the legumes collected at 223 sites in Korea. According to their host specificities they were classified into R. japonicum(218 strains), R. phaseoli(101 strains), R. trifolii(97 strains), R. meliloti(4 strains), R. leguminosarium(1 strain), Rhizobium species(101 strains), and unidentified species(159 strains). 3 potent strains R-138, R-168, and R-214 of R. japonicum have been selected based on the infectivity to soybean cultivar and effeciency of nitrogen fixation. It was observed that the fast-growing strains of R. japonicum contained 1 to 4 plasmids of M.W. of 35-300 Md. However, plasmids were hardly detected for the slow-growing strains.

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Taxonomic Investigations on Korean Higher Fungi(IV) (한국산(韓國産) 고등(高等) 균류(菌類)의 분류학적(分類學的) 연구(硏究)(IV))

  • Kim, Byong-Kak;Kim, Du-Ha;Choi, Eung-Chil;Shim, Mi-Ja
    • The Korean Journal of Mycology
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    • v.4 no.1
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    • pp.17-25
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    • 1976
  • Among the higher fungi which wore collected in the Geong Gi Province and Seoul Korea, nine species, i.e., Mycena haematopoda, Amanita griseofarinosa, Pholiota spectabilis. Pholiota vermiflua, Boletus erythroporus, Russula alutacea, Russula chameleontina, Russula xcampelina and Polyporus sulphureus, were found to be unrecorded species in Korea. The morphological, histological and microchemical characteristics of these fungi were reported.

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High-Temperature-Tolerant Fungus and Oomycetes in Korea, Including Saksenaea longicolla sp. nov.

  • Nam, Bora;Lee, Dong-Jae;Choi, Young-Joon
    • Mycobiology
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    • v.49 no.5
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    • pp.476-490
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    • 2021
  • Global temperatures are steadily increasing, leading to significant changes in microbial diversity and ecology. In the present study, we isolated high-temperature-growing fungi and fungi-like group (Oomycota) strains from freshwater environments of Korea and identified them based on cultural, morphological, and multilocus phylogenetic analyses. As a result, we introduce Saksenaea (Fungi) isolates as a new species, Saksenaea longicolla sp. nov. and record Phytophthora chlamydospora and P. lagoariana (Oomycota) new to Korea. In the growth experiments, they exhibited high-temperature tolerance, which can grow at 35-40 ℃ but become inactive at 4 ℃ and below. This study confirms the presence of high-temperature-tolerant fungi and oomycetes in Korea and suggests that the Korean climate conditions are changing in favor of these species. This indicates that climate warming is altering microbial distributions in freshwater environments.

Studies on the Investigation of Microbial Pathogens of Pine Needle Gall Midge, Thecodiplosis japonensis Uchida et Inoue I. Pathogenecity of Silkworm Muscardine to Pine Needle Gall Midge (솔잎 혹파리의 병원미생물에 관한 조사연구 I. 특히 가잠경화병과 관련하여)

  • 강석권;조용섭;박호용;고성철
    • Journal of Sericultural and Entomological Science
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    • v.24 no.1
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    • pp.32-38
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    • 1982
  • The study has been carried out to investigate a possibility to control the pine needle gall midge, Thecodiplosis japonensis Uchida et Inoue, by microbial pathogens as one of the microbial control measures. The samples were collected at Kocheon-Ri in the suburbs of Suweon city where were heavily damaged by this pest. Microorganisms were isolated from the both of diseased larvae and baiting method of soil microbes. In addition to, several species of the silkworm mucardine diseases were isolated for their infectivity of these fungi to the larvae of pine needle gall midge. Six species of fungi, Aureobasidium pullulans, Ascochyta sp, Verticillium psalliotae, Streptomyces sp., and two species of Aspergillus were isolated from the galls and soils, five species of muscardine diseases, Isaria farinosa, Spicaria pracina, Oospora destructor, Aspergillus flavus and A. oryzae were also identified from the silkworm corpse collected in the silkworm rearing farmers. Total of eleven species of fungi identified from the both of the larval of pine needle gall midge and silkworm larvae were tested for their pathogenecity to the larvae of pine needle gall midge. All of eleven species of fungi identified showed a considerable infectivity to the larvae. Twenty nine different kinds of bacteria were isolated from the both of diseased larvae and infested soils through the direct planting for the larvae and streaking for the corpse. The infectivity test is in progress. However two kinds of bacteria were recognized to be pathogenic to the larvae tested.

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Analysis of Attached Algae and Microbial Community Structure in Sedimentation Basin of Water and Wastewater Treatment Plant (정수 및 하수처리공정 중 침전지 부착조류 및 미생물 군집구조 해석)

  • Lim, Byung-Ran;Ahn, Kyu-Hong;Song, Kyung-Gun;Park, Yu-Jung;Jun, Dae-Young
    • Journal of Korean Society of Water and Wastewater
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    • v.19 no.1
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    • pp.61-67
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    • 2005
  • The objective of this study was to investigate community structure of attached algae and microbes in sedimentation basin of water and wastewater treatment plants by using respiratory quinone profile. There was an evident difference, in microbial community structure and attached algae species, between inclination plate settler and drainage canal in the sedimentation basin. The algae was composed of species in following order; Chlorophyceae>Bascillariophyceae>Cyanophyceae. The dominant quinone types of attached microorganisms in the wastewater treatment plant were plastoquinone (PQ)-9, vitamin(V)K-1 followed by UQ-8, but those for water treatment plant were VK-1, PQ-9 followed by UQ-8. These results suggests that nutrients, seasons and material of sedimentation basin have notable influence on composition of attached algae and microbial community structure in water and wastewater treatment plants.

Taxonomy of a Soil Bacteria YNB54 Strain Which Shows Specific Antagonistic Activities against Plant Pathogenic Phytophthora spp. (식물역병균 Phytophthora spp.에 특이 길항균인 YNB54 균주의 분류)

  • Kim Sam-Sun;Kwon Soon-Wo;Lee Seon-Young;Kim Soo-Jin;Koo Bon-Sung;Weon Hang-Yeon;Kim Byung-Yong;Yeo Yun-Soo;Lim Yoong-Ho;Yoon Sang-Hong
    • Microbiology and Biotechnology Letters
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    • v.34 no.2
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    • pp.101-108
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    • 2006
  • YNB54 strain which shows inhibitory activities specific to the plant pathogenic Phytophthora sp. on potato dextrose agar medium was screened among lots of strains isolated from Korean soils. To identify taxonomy of the Phytophthora specific antagonistic bacteria YNB54, 165 rDNA sequence, MIDI fatty acid composition, DNA-DNA hybridization, GC content, and commercial multitest systems such as API 20E and Biolog GN were performed. Results of commercial kits including lots of biochemical and physiological reactions showed that this strain was closely related to taxa including Enterobacter cloacae and Enterobacter cancerogenus species than other genera(Citerobacter Klebsiella, Leclercia). Also, analysis of its MIDI, G+C contents, and DNA-DNA hybridization suggests that this strain was more similiar to the Genus Enterobacter than other genera (Citerobacter Klebsiella, Leclercia). This strain was potentially identified as Enterobacter sp. by these results. But our 16S ribosomal DNA sequences (rDNA) analysis confirmed that it was more closely related to the cluster of Citerobacter freundii ATCC 29935 than any other Enterobacter species. In the absence of defined phylogenetic critia for delineating genera, the results observed with Citrobacter and Enterobacter species suggest that further studies are needed to clarify their relationships. This investigation demonstrates that YNB54 strain is genetically diverse and potentially more taxonomically complex than hitherto realized. Further study is necessary to confirm their taxonomic positions.

Electricity Generation and Microbial Community variation in Microbial Fuel Cell with various Electrode Combinations. (다양한 탄소전극조합에 따른 미생물 연료전지의 전기발생량 및 미생물 군집변화)

  • Kwon, Jae-Hyeong;Choi, Soo-Jung;Cha, Jae-Hwan;Kim, Hyo-Soo;Kim, Ye-Jin;Yu, Jae-Cheul;Kim, Chan-Won
    • Journal of Korean Society of Environmental Engineers
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    • v.32 no.1
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    • pp.87-96
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    • 2010
  • The electrode material is one of the factors affecting the power production of microbial fuel cell. In this study, effects of carbon electrode material, thickness and configuration on the power density, biofilm formation and microbial community diversity of microbial fuel cell were investigated. To optimize the anode-cathode electrode assembly, seven lab-scale reactors which had various carbon electrode constructions were operated in continuous mode. Under the steady state condition, the electrode combination of graphite felt (6 mm) with hole showed the highest cell voltage of 238 mV and the coulombic efficiency of 37%. As a result of SEM analysis, the bacteria growing on surface of knitted type of carbon cloth and graphite felt electrode ncreased significantly. The change of dominant species between seeding sludge and biofilm on the surface of anode electrode, microbial analysis with PCR-DGGE showed that the dominant species of seeding sludge are quite different from those of biofilm on the surface of each anode electrode. Especially Geobacter sp., a well known electrochemical bacteria, was found as the dominant species of the electrode combination with graphite felt.

Microbial Consortia in Oman Oil Fields: A Possible Use in Enhanced Oil Recovery

  • Al-Bahry, Saif N.;Elsahfie, Abdulkader E.;Al-Wahaibi, Yahya M.;Al-Bimani, Ali S.;Joshi, Sanket J.;Al-Maaini, Ratiba A.;Al-Alawai, Wafa J.;Sugai, Yuichi;Al-Mandhari, Mussalam
    • Journal of Microbiology and Biotechnology
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    • v.23 no.1
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    • pp.106-117
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    • 2013
  • Microbial enhanced oil recovery (MEOR) is one of the most economical and efficient methods for extending the life of production wells in a declining reservoir. Microbial consortia from Wafra oil wells and Suwaihat production water, Al-Wusta region, Oman were screened. Microbial consortia in brine samples were identified using denaturing gradient gel electrophoresis and 16S rRNA gene sequences. The detected microbial consortia of Wafra oil wells were completely different from microbial consortia of Suwaihat formation water. A total of 33 genera and 58 species were identified in Wafra oil wells and Suwaihat production water. All of the identified microbial genera were first reported in Oman, with Caminicella sporogenes for the first time reported from oil fields. Most of the identified microorganisms were found to be anaerobic, thermophilic, and halophilic, and produced biogases, biosolvants, and biosurfactants as by-products, which may be good candidates for MEOR.

Temporal and Spatial Change in Microbial Diversity in New-developed Wetland Soil Covered by Tamarix chinesis Community in Chinese Yellow River Delta

  • Chen Weifeng;Ann Seoung-Won;Kim Hong-Nam;Shi Yanxi;Mi Qinghua
    • Journal of Environmental Science International
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    • v.14 no.4
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    • pp.367-371
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    • 2005
  • Soil samples were collected from new-developed wetland soil ecosystem of Tamarix chinesis plantation in Chinese Yellow River Delta in different months of 2003. Soil characteristics, temporal change and spatial distribution of microbial community composition and their relationship with nitrogen turnover and circling were investigated in order to analyze and characterize the role of microbial diversity and functioning in the specific soil ecosystem. The result showed that the total population of microbial community in the studied soil was considerably low, compared with common natural ecosystem. The amount of microorganism followed as the order: bacteria> actinomycetes>fungi. Amount of actinomycetes were higher by far than that of fungi. Microbial population remarkably varied in different months. Microbial population of three species in top horizon was corrected to that in deep horizon. Obvious rhizosphere effect was observed and microbial population was significantly higher in rhizosphere than other soils due to vegetation growth, root exudation, and cumulative dead fine roots. Our results demonstrate that microbial diversity is low, while is dominated by specific community in the wetland ecosystem of Tamarix chinesi.