• 제목/요약/키워드: MiMammal

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환경 DNA 메타바코딩을 활용한 멧돼지 및 육상 포유류 출현 모니터링 - 경기도 양평군 일대를 중심으로 - (Monitoring the presence of wild boar and land mammals using environmental DNA metabarcoding - Case study in Yangpyeong-gun, Gyeonggi-do -)

  • 김용환;한윤하;박지윤;김호걸;조수현;송영근
    • 한국환경복원기술학회지
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    • 제24권6호
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    • pp.133-144
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    • 2021
  • This study aims to estimate location of land mammals habitat by analyzing spatial data and investigate how to apply environmental DNA monitoring methodology to lotic system in Yangpyeong-gun, Gyeonggi-do. Environmental DNA sampling points are selected through spatial analysis with QGIS open source program by overlaying Kernel density of wild boar(Sus scrofa), elevation, slope and land-cover map, and 81 samples are collected. After 240 mL of water was filtered in each sample, metabarcoding technique using MiMammal universal primer was applied in order to get a whole list of mammal species whose DNA particles contained in filtered water. 8 and 22 samples showed DNA of wild boar and water deer, respectively. DNA of raccoon dog, Eurasian otter, and Siberian weasel are also detected through metabarcoding analysis. This study is valuable that conducted in outdoor lotic system. The study suggests a new wildlife monitoring methodology integrating overlayed geographic data and environmental DNA.

조류.포유류의 분포와 산림면적, 토지피복과의 관련성 (Relationship between the Birds.Mammals' Distribution and Forest area, Land cover)

  • 이동근;김보미;송원경
    • 농촌계획
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    • 제15권2호
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    • pp.19-26
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    • 2009
  • The purpose of this study is to build Island biogeography in the basic concept of landscape ecology in South Korea by draw relationship between the species side of quantitative habitats and forest area surveyed in the national database based on investigation of the 2nd natural environment. In addition, try to present criterion of habitats character category after understanding habitats character of emergence area side of quality habitats based on the type of formatting. Species and forest area relationship analyzed using correlation analysis and simple regression analysis. Also habitat character limited composition ratio of neighboring land cover and analyzed using hierarchical cluster analysis to classify type of habitat. As a result, we found that forest area is correlated with number of species, forests which is bigger than 100ha are more important of increase in species' population. And according to land cover composition ratio, bird's classified types of forest inner species, forest edge species, forest outer species and mammal's classified types of forest inner species, forest general species, forest edge species. We suggest that study of species-forest area relationship and emergence habitat character be used as some management plans of species' conservation, protection and restoration.

Current Status of Mammal Fauna on Jindo Island, Korea

  • Oh, Hong Shik;Park, Seon Mi;Kim, Yoo Kyung;Han, Sang Hyun;Lee, Hwa Jin;Ha, Jeong Wook
    • Animal Systematics, Evolution and Diversity
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    • nspc9호
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    • pp.73-79
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    • 2016
  • In the present study, to explore the current status of mammals that inhabit Jindo Island, Jeollanam-do, South Korea, a survey was conducted from July 6 to July 9, 2016. Using several survey methods, such as Sherman's live trap, footprint, caves, excretions, and road-kill investigations, the mammals observed on Jindo Island were found to be from 5 orders and 9 families, including 12 species in total. Among them, three species of small mammals were Mogera wogura, Crocidura shantungensis, and Apodemus agrarius. Additionally, two legally protected species were found through excretion observations. Lutra lutra and Prionailurus bengalensis, which were designated to endangered wild animal classes I and II, respectively. The survey results can be used as a valuable resource for identifying the distribution and habitat status of mammals in the Jindo-gun area, as well as for building a database for ecosystem preservation.

도시 내 육상 생물종 모니터링을 위한 환경DNA 리뷰 및 적용 (Review and application of environmental DNA (eDNA) investigation of terrestrial species in urban ecosystem)

  • 김휘문;김성열;박일수;이현정;김경태;김영;김혜정;곽민호;임태양;박찬;송원경
    • 한국환경복원기술학회지
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    • 제23권2호
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    • pp.69-89
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    • 2020
  • Scientific trust and quantification of traditional species investigation and results that have been used in ecology for decades has always been a problem and concern for ecologists. Global ecologists have proposed DNA-based species investigation studies to find answers to problems. In this study, we reviewed the global trend of research on environmental DNA(eDNA), which is a method for monitoring species by detecting DNA of organisms naturally mixed in environmental samples such as water, soil, and feces. The first eDNA research confirmed the possibility of species investigation at the molecular level, and commercialization of NGS(Next Generation Sequencing) and DNA metabarcoding elicits efficient and quantitative species investigation results, and eDNA research is increasing in the filed of ecology. In this study, mammals and birds were detected using MiMammal universal primers from 23 samples(3 natural reserves; 20 water bowls) out of 4 patches to verify eDNA for urban ecosystems in Suwon, and eDNA was verified by performing camera trapping and field survey. Most terrestrial species were detected through eDNA, and particularly, mice(Mus musculus), and Vinous-throated Parrotbill (Sinosuthora webbiana) were identified only with eDNA, It has been confirmed to be highly effective by investigating techniques for small and internal species. However, due to the lack of resolution of the primer, weasels(Mustela sibirica) and squirrels(Melanochromis auratus) were not detected, and it was confirmed that the traditional investigation method was effective only for a few species, such as Mogera robusta(Mogera robusta). Therefore, it is judged that the effects of species investigation can be maximized only when eDNA is combined with traditional field survey and Camera trapping to complement each other.

분류군별 외래생물 탐지를 위한 환경 DNA 메타바코딩 활용 가능성 (Feasibility of Environmental DNA Metabarcoding for Invasive Species Detection According to Taxa)

  • 강유진;전정은;한승우;원수연;송영근
    • 환경영향평가
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    • 제32권2호
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    • pp.94-111
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    • 2023
  • 효과적인 외래생물 관리 전략 수립을 위해서는 도입 및 확산 여부 평가를 위한 정기 모니터링이 요구된다. 환경 DNA (eDNA, environmental DNA) 메타바코딩은 높은 검출 민감도를 가지고 다수의 종을 동시에 검출할 수 있어 외래생물의 출현 여부와 그 영향을 평가하는데 활발히 활용되고 있다. 국내에서는 어류를 중심으로 메타바코딩의 적용 가능성 평가가 이루어지고 있으며 타 분류군에 대한 연구는 부족한 실정이다. 따라서 본 연구에서는 환경 DNA 메타바코딩을 활용한 국내 외래생물 탐지 가능성을 확인하고자 했다. 분류군별 검출 가능성을 확인하기 위해 어류, 포유류, 조류, 양서류를 목표로 디자인 된 4가지 범용 프라이머(MiFish, MiMammal, Mibird, Amp16S)를 활용하여 대상종 검출 여부를 평가하였다. 그 결과, 총 55개 지점 중 17개 지점(Trachemys scripta, 3개 지점; Cervus nippon, 3개 지점; Micropterus salmoides, 7개 지점; Rana catesbeiana, 4개 지점)에서 대상종의 서식이 확인되었다. 대상지 내 조밀한 지점 선정에도 생태적 특성을 반영한 검출 지점에 차이가 나타났다. 큰입배스와 붉은귀거북을 중심으로 외래생물이 출현이 생물 군집구조(종 풍부도, 풍부도, 다양도)에 미치는 영향을 비교한 결과, 외래생물이 서식하는 지점에서의 다양도가 더 높게 나타났다. 또한 외래생물 출현 지점에서 출현 종 수가 1~4종 추가 검출되었으며 풍부도 또한 1.7배 높게 나타났다. 메타바코딩을 통한 외래생물 검출 결과 및 군집구조 비교는 eDNA를 통한 다량의 모니터링 데이터 구축이 다차원적 생태계 평가에 효율적으로 활용될 수 있음을 나타냈다. 또한 환경의 인위적, 자연적 변화에 따른 생물상 변화를 관찰하고 자연생태 분야의 환경영향평가 등 현황 평가 및 예측을 위한 주요한 기초자료로 활용 가능성을 제시하였다.

대암산 작은용늪 및 애기용늪 생태현황분석 (Ecosystem Analysis for Little Yong-neup, Baby Yong-neup in Daeam-san in Korea)

  • 이란;박은경;박미옥;구본학
    • 한국환경복원기술학회지
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    • 제17권4호
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    • pp.43-56
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    • 2014
  • In this study, ecological investigation was performed on Yong-neup, Daeam-san for 5 times. This area is considered DMZ zone located between Yanggu-gun and Inje-gun, Gangwon-do, where has been recognized highly valuable for ecological preservation. As a result, Sphagnum and hydrophobic vegetation were found in Little Yong-neup, revealing its characteristics of high moor, where as no Sphagnum were found in Baby Yong-neup. Thereby, the carnification has been investigated in both Little Yong-neup and Baby Yong-neup. A main cause of damage was associated with the creation of stating rink and increases of visitors. The damages of vegetation in Little Yong-neup and Baby Yong-neup have been intensified by road construction or uses of groundwater while relocating military troops to upper stream of Little Yong-neup and Baby Yong-neup, further causing the damages of water circulation system and soil erosion. These artificial factors have caused the carnification of wetland protection areas including Little Yong-neup. The terrestrial vegetations, such as Plantago asiatica, Geranium Koreanum and Artemisia feddei have increased compared to current survey conducted by the Ministry of Environment. 5 endangered species, such as Lychnis wilfordii and Trientalis europaea and 5 other introduced species, such as Aster pilosus and Taraxacum officinale were found. 10 different species of mammal and 2 species of amphibian were investigated; and in addition to this, a original form of Sphagnum fens, the remaining wetland was found. Therefore, this study is to identify the causes of damages in Little Yong-neup and Baby Yong-neup through their ecological survey and accordingly proposing a direction for ecological restoration through the improvement of water circulation system, creation of habitats for plant and animal, restoration of vegetation through eco-friendly materials and indigeneity, relocation of the current military troops, securing of structural stability.

Development and characterization of nine microsatellite loci from the Korean hare (Lepus coreanus) and genetic diversity in South Korea

  • Kim, Sang-In;An, Jung-Hwa;Choi, Sung-Kyoung;Lee, Yun-Sun;Park, Han-Chan;Kimura, Junpei;Kim, Kyung-Seok;Min, Mi-Sook;Lee, Hang
    • Animal cells and systems
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    • 제16권3호
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    • pp.230-236
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    • 2012
  • The Korean hare, Lepus coreanus, is an important mammal in ecosystem food chains, and is distributed across the entire Korean peninsula and northeastern China. Polymorphic microsatellite loci were developed using the biotinenrichment technique for use in population genetics studies. Five trinucleotide and four dinucleotide microsatellite loci were selected and tested on 22 Korean hare specimens collected from Gangwon Province and Gyeongsangbuk Province in South Korea. The number of alleles across the two sampling regions ranged from three to nine with a mean of 6.1. Mean observed and expected heterozygosities and polymorphic information content were 0.540, 0.627 and 0.579, respectively. Only one locus, Lc06, showed departure from Hardy-Weinberg equilibrium after applying the Bonferroni correction. Four microsatellites, Lc01, Lc03, Lc12, and Lc19, satisfied the criteria to serve as a core set of markers recommended for population genetics studies. These new microsatellite markers will be widely applicable to future genetic studies for management and conservation of the Korean hare and related species, including assessment of the genetic diversity and population structure of L. coreanus.

유용곤충과 포유류에 대한 곤충병원선충(Steinernema carpocapsae)과 공생세균(Xenorhabdus nematophilus)의 독성 (Toxicological Analysis of the Entomopathogenic Nematode, Steinernema carpocapsae, and the Symbiotic Bacteria, Xenorhabdus nematophilus on Beneficial Insects and Mammals)

  • 박영진;김미경;김진;양경형;김용균
    • 한국응용곤충학회지
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    • 제40권3호
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    • pp.259-264
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    • 2001
  • 해충의 생물적 방제 인자로서 주목받고 있는 곤충병원선충(Steinernema carpocapsae)과 이들의 공생세균(Xenorhabdus nematophilus)이 유용곤충인 누에(Bombyx mori)와 그물등개미(Pristomyrmex pungens)에 상이한 독성을 보였다. S. carpocapsae는 누에에 대해 매우 높은 살충력(반수치사농도: 4IJs (감염태 유충수)/ml)을 보이는 반면, 그물등개미에 대해서는 매우 약했다. (반수치사농도: >150,000 IJs/ml). 반면에 X. nematophilus는 그물등개미에 대해 높은 경구독성(반수치사농도: $1.4$\times$10^3$cfu (콜로니 형성수)/ml)을 보였으나, 누에에 대해서는 낮았다. (반수치사농도: >$10^{8}$ cfu/ml). 또한 실험동물 랫드(Rattus norvegicus)에 S. carpocapsae와 X. nematophilus를 강제로 경구투여 한 결과 시험 전기간(21일)동안 치사개체는 없었으며, 내부 장기에서 처리한 공생세균과 선충은 발견되지 않았다.

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