• Title/Summary/Keyword: Maxent(Maximum Entropy Model)

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Comparison of Species Distribution Models According to Location Data (위치자료의 종류에 따른 생물종 분포모형 비교 연구)

  • Seo, Chang-Wan;Park, Yu-Ri;Choi, Yun-Soo
    • Journal of Korean Society for Geospatial Information Science
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    • v.16 no.4
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    • pp.59-64
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    • 2008
  • We need to use the strength of each Species Distribution Model(SDM) because presence location data were only collected due to time and economic limitations in Korea. This study investigated and compared GAM(Generalized Additive Model) which is one of presence-absence models with Maxent(Maximum Entropy Model) which is one of presence only models according to location data(presence/absence data). The target species was Fisher(Martes pennanti) which is an endangered species in California, USA. We implemented environmental data such as topography, climate and vegetation, and applied models to sub-regions and study area. The results of this study were as follows. Firstly, GAM which used real presence and absence data was better than GAM which used pseudo-absence data and Maxent which used presence-only data. Secondly, Maxent was better than GAM when presence-only data were used. Lastly, each model which applied to different regions didn't predict other area well due to the difference of habitat environment and over-predicted outside of study area. We need to select an optimal model to predict a suitable habitat according to the type and distribution of location data.

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Comparison of Logistic, Bayesian, and Maxent Modelsfor Prediction of Landslide Distribution (산사태 분포 예측을 위한 로지스틱, 베이지안, Maxent의 비교)

  • Al-Mamun, Al-Mamun;Jang, Dong-Ho;Park, Jongchul
    • Journal of The Geomorphological Association of Korea
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    • v.24 no.2
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    • pp.91-101
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    • 2017
  • Quantitative forecasting methods based on spatial data and geographic information system have been used in predicting the landslide location. This study compared the simulated results of logistic, Bayesian, and maximum entropy models to understand the uncertainties of each model and identify the main factors that influence landslide. The study area is Boeun gun where 388 landslides occurred in the year of 1998. The verification results showed that the AUC of the three models was 0.84. However, the landslide susceptibility distribution of Maxent model was different from those of the other two models. With the same landslide occurrence data, the result of high susceptible area in Maxent model is smaller than Logistic or Bayesian. Maxent model, however, proved to be more efficient in predicting landslide than the other two models. In Maxent's simulations, the responsible factors for landslide susceptibility are timber age class, land cover, timber diameter, crown closure, and soil drainage. The results suggest that it is necessary to consider the possibility of overestimation when using Logistic or Bayesian model, and forest management around the study area can be an effective way to minimize landslide possibility.

Prediction on Habitat Distribution in Mt. Inwang and Mt. An Using Maxent (Maxent 모형을 활용한 인왕산-안산 서식지 분포 예측)

  • Seo, Saebyul;Lee, Minjee;Kim, Jaejoo;Chun, Seung-Hoon;Lee, Sangdon
    • Journal of Environmental Impact Assessment
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    • v.25 no.6
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    • pp.432-441
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    • 2016
  • In this study, we predicted species distributions in Mt. Inwang and Mt. An as preceding research to build ecological corridor by considering connectivity of habitats which have been fragmented in the city. We analyzed species distributions by using Maxent (Maximum Entropy Approach) model with species presence. We used 23 points of mammals and 15 points of Titmouse (Parus major, P. palustris, P. varius) as target species from appearance points of species examined. We build 4 geography factors, 4 vegetation factors, and 2 distance factors as model variables In case of mammals, factors that affected species distribution model was Digital Elevation Model(DEM, 34%) followed by Distance from edge forest to interior (24.8%) and Species of tree (10%). On the other hand, in case of Parus species, factors that affected species distribution model were DEM (39.6%) followed by distance from road (35.4%) and Density-class (8.2%). Therefore, birds and mammals prefer interior of mountain, and this area needs to be protected.

Prediction of Potential Distributions of Two Invasive Alien Plants, Paspalum distichum and Ambrosia artemisiifolia, Using Species Distribution Model in Korean Peninsula (한반도에서 종 분포 모델을 이용한 두 침입외래식물, 돼지풀과 물참새피의 잠재적 분포 예측)

  • Lee, SeungHyun;Cho, Kang-Hyun;Lee, Woojoo
    • Ecology and Resilient Infrastructure
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    • v.3 no.3
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    • pp.189-200
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    • 2016
  • The species distribution model would be a useful tool for understanding how invasive alien species spread over the country and what environmental variables contribute to their distributions. This study is focused on the potential distribution of two invasive alien species, the common ragweed (Ambrosia artemisiifolia) and knotgrass (Paspalum distichum) in the Korean Peninsula. The maximum entropy (Maxent) model was used for the prediction of their distribution by inferring their climatic environmental requirements from localities where they are currently known to occur. We obtained their presence data from the Global Biodiversity Information Facility and the Korean plant species databases and bioclimatic data from the WorldClim dataset. As a results of the modelling, the potential distribution predicted by global occurrence data was more accurate than that by native occurrence data. The variables determining the common ragweed distribution were precipitation of the driest month and annual mean temperature. Both annual and the coldest quarter mean temperatures were critical factors in determining the knotgrass distribution. The Maxent model could be a useful tool for the prediction of alien species invasion and the management of their expansion.

A Study on the Species Distribution Modeling using National Ecosystem Survey Data (전국자연환경조사 자료를 이용한 종분포모형 연구)

  • Kim, Jiyeon;Seo, Changwan;Kwon, Hyuksoo;Ryu, Jieun;Kim, Myungjin
    • Journal of Environmental Impact Assessment
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    • v.21 no.4
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    • pp.593-607
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    • 2012
  • The Ministry of Environment have started the 'National Ecosystem Survey' since 1986. It has been carried out nationwide every ten years as the largest survey project in Korea. The second one and the third one produced the GIS-based inventory of species. Three survey methods were different from each other. There were few studies for species distribution using national survey data in Korea. The purposes of this study are to test species distribution models for finding the most suitable modeling methods for the National Ecosystem Survey data and to investigate the modeling results according to survey methods and taxonominal group. Occurrence data of nine species were extracted from the National Ecosystem Survey by taxonomical group (plant, mammal, and bird). Plants are Korean winter hazel (Corylopsis coreana), Iris odaesanensis (Iris odaesanensis), and Berchemia (Berchemia berchemiaefolia). Mammals are Korean Goral (Nemorhaedus goral), Marten (Martes flavigula koreana), and Leopard cat (Felis bengalensis). Birds are Black Woodpecker (Dryocopus martius), Eagle Owl (Bubo Bubo), and Common Buzzard (Buteo buteo). Environmental variables consisted of climate, topography, soil and vegetation structure. Two modeling methods (GAM, Maxent) were tested across nine species, and predictive species maps of target species were produced. The results of this study were as follows. Firstly, Maxent showed similar 5 cross-validated AUC with GAM. Maxent is more useful model to develop than GAM because National Ecosystem Survey data has presence-only data. Therefore, Maxent is more useful species distribution model for National Ecosystem Survey data. Secondly, the modeling results between the second and third survey methods showed sometimes different because of each different surveying methods. Therefore, we need to combine two data for producing a reasonable result. Lastly, modeling result showed different predicted distribution pattern by taxonominal group. These results should be considered if we want to develop a species distribution model using the National Ecosystem Survey and apply it to a nationwide biodiversity research.

Habitat Potential Evaluation Using Maxent Model - Focused on Riparian Distance, Stream Order and Land Use - (Maxent 모형을 이용한 서식지 잠재력 평가 - 하천으로부터의 거리, 하천의 차수, 토지이용을 중심으로-)

  • Lee, Dong-Kun;Kim, Ho-Gul
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.13 no.6
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    • pp.161-172
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    • 2010
  • As the interest on biodiversity has increased around the world, researches about evaluating potential for habitat are also increasing to find and comprehend the valuable habitats. This study focus on comprehending the significance of stream in evaluating habitat's potential. The purpose of this study is to evaluate habitat potential with applying stream as a main variable, and to comprehend the relationship between the variables and habitat potential. Basin is a unit that has hydrological properties and dynamic interaction with ecosystem. Especially, biodiversity and suitability of habitat in basin area has direct correlation with stream. Existing studies also are proposing for habitat potential evaluation in basin unit, they applied forest, slope and road as main variables. Despite stream is considered the most important factor in basin area, researchers haven't applied stream as a main variable. Therefore, in this study, three variables that can demonstrate hydrological properties are selected, which are, riparian distance, stream order and land use disturbance, and evaluate habitat potential. Habitat potential is analyzed by using Maxent (Maximum entropy model), and vertebrate's presence data is used as dependent variables and stream order map and land cover map is used as base data of independent variables. As a result of analysis, habitat potential is higher at riparian and upstream area, and lower at frequently disturbed area. Result indicates that adjacent to stream, upstream, and less disturbed area is the habitat that vertebrate prefer. In particular, mammals prefer adjacent area of stream and forest and reptiles prefer upriver area. Birds prefer adjacent area of stream and midstream and amphibians prefer adjacent area of stream and upriver. The result of this research could help to establish habitat conservation strategy around basin unit in the future.

Habitat Analysis of Hyla suweonensis in the Breeding Season Using Species Distribution Modeling (종분포모형을 이용한 수원청개구리의 번식기 서식지 분석)

  • Song, Wonkyong
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.18 no.1
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    • pp.71-82
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    • 2015
  • Hyla suweonensis is an endemic species and is designated as the only endangered species I among amphibians in 2012 by the Ministry of Environment, however studies about its habitat are lacking. This study was carried out to analyze habitat of H. suweonensis based on the spatial information using Maxent (Maximum entropy model as a species distribution model. We detected 45 present points until 2013 and 10 environmental variables by literature review for the model. The results showed that $429km^2$ (0.95%) of the study area, which was about 7.75% of the total agricultural area, was high possible habitats of H. suweonensis. The habitat of H. suweonensis was analyzed by over $1km^2$ rice paddy fields that were lower elevations, flat slopes, and not fragmented. The distance from forests and rivers was identified as a factor that affects its habitat possibilities. In order to conserve H. suweonensis, a large area of rice paddy fields should be preserved, and especially the area around forests and rivers would be required more intensive management. In addition, to compensate for degraded habitats of H. suweonensis in urban areas like as Suwon city, considering integrated watershed management strategy could be effective in the perspective of ecological habitat network of H. suweonensis.

Application of Species Distribution Model for Predicting Areas at Risk of Highly Pathogenic Avian Influenza in the Republic of Korea (종 분포 모형을 이용한 국내 고병원성 조류인플루엔자 발생 위험지역 추정)

  • Kim, Euttm;Pak, Son-Il
    • Journal of Veterinary Clinics
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    • v.36 no.1
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    • pp.23-29
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    • 2019
  • While research findings suggest that the highly pathogenic avian influenza (HPAI) is the leading cause of economic loss in Korean poultry industry with an estimated cumulative impact of $909 million since 2003, identifying the environmental and anthropogenic risk factors involved remains a challenge. The objective of this study was to identify areas at high risk for potential HPAI outbreaks according to the likelihood of HPAI virus detection in wild birds. This study integrates spatial information regarding HPAI surveillance with relevant demographic and environmental factors collected between 2003 and 2018. The Maximum Entropy (Maxent) species distribution modeling with presence-only data was used to model the spatial risk of HPAI virus. We used historical data on HPAI occurrence in wild birds during the period 2003-2018, collected by the National Quarantine Inspection Agency of Korea. The database contains a total of 1,065 HPAI cases (farms) tied to 168 unique locations for wild birds. Among the environmental variables, the most effective predictors of the potential distribution of HPAI in wild birds were (in order of importance) altitude, number of HPAI outbreaks at farm-level, daily amount of manure processed and number of wild birds migrated into Korea. The area under the receiver operating characteristic curve for the 10 Maxent replicate runs of the model with twelve variables was 0.855 with a standard deviation of 0.012 which indicates that the model performance was excellent. Results revealed that geographic area at risk of HPAI is heterogeneously distributed throughout the country with higher likelihood in the west and coastal areas. The results may help biosecurity authority to design risk-based surveillance and implementation of control interventions optimized for the areas at highest risk of HPAI outbreak potentials.

Habitat Analysis Study of Honeybees(Apis mellifera) in Urban Area Using Species Distribution Modeling - Focused on Cheonan - (종분포모형을 이용한 도시 내 양봉꿀벌 서식환경 분석 연구 - 천안시를 중심으로 -)

  • Kim, Whee-Moon;Song, Won-Kyong;Kim, Seoung-Yeal;Hyung, Eun-Jeong;Lee, Seung-Hyun
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.20 no.3
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    • pp.55-64
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    • 2017
  • The problem of the population number of honeybees that is decreasing not only domestically but also globally, has a great influence on human beings and the entire ecosystem. The habitat of honeybees is recognized to be superior in urban environment rather than rural environment, and predicting for habitat assessment and conservation is necessary. Based on this, we targeted Cheonan City and neighboring administrative areas where the distribution of agricultural areas, urban areas, and forest areas is displayed equally. In order to predict the habitat preferred by honeybees, we apply the Maxent model what based on the presence information of the species. We also selected 10 environmental variables expected to influence honeybees habitat environment through literature survey. As a result of constructing the species distribution model using the Maxent model, 71.7% of the training data were shown on the AUC(Area Under Cover) basis, and it was be confirmed with an area of 20.73% in the whole target area, based on the 50% probability of presence of honeybees. It was confirmed that the contribution of the variable has influence on land covering, distance from the forest, altitude, aspect. Based on this, the possibility of honeybee's habitat characteristics were confirmed to be higher in wetland environment, in agricultural land, close to forest and lower elevation, southeast and west. The prediction of these habitat environments has significance as a lead research that presents the habitat of honeybees with high conservation value of ecosystems in terms of urban space, and it will be useful for future urban park planning and conservation area selection.

New record of a blood-feeding terrestrial leech, Haemadipsa rjukjuana Oka, 1910 (Haemadipsidae, Arhynchobdellida) on Heuksando Island and possible habitat estimation in the current and future Korean Peninsula using a Maxent model

  • Tae-Yeong Eom;Hyeon-Soo Kim;Yeong-Seok Jo
    • Journal of Species Research
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    • v.12 no.1
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    • pp.109-113
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    • 2023
  • To build a distribution model for Haemadipsa rjukjuana, we collected current occurrences of the species on Heuksando with adjacent islands. Based on current locations and 19 climate variables with DEM (digital elevation model), we built the MaxEnt (maximum entropy) species distribution model for H. rjukjuana in the islands. Then, we applied the MaxEnt model to the mainland of Korea with the current climate condition and topology. In addition to the current distribution scenario, we predicted the future distribution scenarios in Korea by Coupled Model Intercomparison Project Phase 6 (CMIP6) global climate models. Shared Socioeconomic Pathway (SSP) 585 of two CMIP6 models(GISS-E2-1 and INM-CM4-8) from 2040 to 2100 were used for the future projection.