• Title/Summary/Keyword: Linkage Map

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MLP-based 3D Geotechnical Layer Mapping Using Borehole Database in Seoul, South Korea (MLP 기반의 서울시 3차원 지반공간모델링 연구)

  • Ji, Yoonsoo;Kim, Han-Saem;Lee, Moon-Gyo;Cho, Hyung-Ik;Sun, Chang-Guk
    • Journal of the Korean Geotechnical Society
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    • v.37 no.5
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    • pp.47-63
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    • 2021
  • Recently, the demand for three-dimensional (3D) underground maps from the perspective of digital twins and the demand for linkage utilization are increasing. However, the vastness of national geotechnical survey data and the uncertainty in applying geostatistical techniques pose challenges in modeling underground regional geotechnical characteristics. In this study, an optimal learning model based on multi-layer perceptron (MLP) was constructed for 3D subsurface lithological and geotechnical classification in Seoul, South Korea. First, the geotechnical layer and 3D spatial coordinates of each borehole dataset in the Seoul area were constructed as a geotechnical database according to a standardized format, and data pre-processing such as correction and normalization of missing values for machine learning was performed. An optimal fitting model was designed through hyperparameter optimization of the MLP model and model performance evaluation, such as precision and accuracy tests. Then, a 3D grid network locally assigning geotechnical layer classification was constructed by applying an MLP-based bet-fitting model for each unit lattice. The constructed 3D geotechnical layer map was evaluated by comparing the results of a geostatistical interpolation technique and the topsoil properties of the geological map.

Strategies for a Phase 2 Road Map of Global Problem Solving Center 2030 (2030 글로벌문제해결거점 2단계 사업 추진전략 로드맵)

  • Maeng, Min-Soo;Ahn, Sung-Hoon;Moon, Ji-Hyun;Dockko, Seok
    • Journal of Appropriate Technology
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    • v.7 no.1
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    • pp.115-124
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    • 2021
  • Due to the successful accomplishments of the first-stage base center project, a road-map for the second-stage, global base center 2030 project has recently been proposed. The vision of the base center is to build a technology centered, cooperation based platform for a sustainable global community. The global base center 2030 project is based on three core strategies as well as three key strategies. The main goal of the core strategy is to establish an interdisciplinary smart platform, as well as a global tech-coordination facility to implement sustainable, inclusive, and innovative science and technology based ODA projects. To achieve such goals, the global center will focus on developing a global living lab, interdisciplinary smart linkage systems, and a global operating platform. The main goals for the key strategies are to solve issues at the base centers while establishing an international relationship through sustainable technology. To achieve such goals, key projects are centered in establishing a ICT package, and a global living lab based on smart interconnected system. With this, a global inter-connected business platform will also be established to support technical and operational issues.

Detection of Quantitative Trait Loci for Growth and Carcass Traits on BTA6 in a Hanwoo Population

  • Lee, Y.-M.;Lee, Y.S.;Han, C.-M.;Lee, J.-H.;Yeo, J.S.;Kim, Jong-Joo
    • Asian-Australasian Journal of Animal Sciences
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    • v.23 no.3
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    • pp.287-291
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    • 2010
  • The purpose of this study was to detect quantitative trait loci (QTL) for growth and carcass quality traits on BTA6 in a population of Hanwoo cattle. Three hundred and sixty one steers were produced from 39 sires that were sired by 17 grandsires in the two Hanwoo farming branches of the National Livestock Research Institute of Korea, between Spring 2000 and Fall 2002. DNA samples were collected for all of the steers, sires and grandsires, and the phenotypes for six growth and carcass quality traits were measured at 24 months of age. Twelve microsatellite markers were chosen on BTA6 and a linkage map was constructed by using seven of the twelve markers. Then, a chromosome-wide QTL scan was performed by applying an Animal Model, in which effects of QTL alleles within the grand sires were fitted as a random term. Three QTL were detected at the 5% chromosome-wise level for backfat thickness, average daily gain, and final weight. The most likely positions for the QTL were in the proximal region, i.e. 0 cM, 35 cM, and 63 cM, respectively. Also, another QTL for longissimus dorsi muscle area was detected at the 10% chromosome-wise level at 67 cM. These results were, in general, consistent with our previous report, in which candidate gene analyses showed that a SNP near ILSTS035 flanked by BM4621 (62.5 cM) and BMS2460 (81.3 cM) was associated with final weight, carcass weight, average daily gain, and longissimus dorsi muscle area in the same Hanwoo population.

Identification and characterization of QTLs and QTL interactions for Macro- and Micro-elements in rice (Oryza sativa L.) grain

  • Qin, Yang;Kim, Suk-Man;Sohn, Jae-Keun
    • Journal of Plant Biotechnology
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    • v.35 no.4
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    • pp.257-263
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    • 2008
  • Improvement of the macro- and micro-elements density of rice (Oryza sativa L.) is gradually becoming a new breeding objective. In this study, the genomic regions associated with potassium, calcium, magnesium and iron content in rice grain were identified and characterized by using a doubled haploid (DH) population. Fifty-six simple sequence repeat (SSR) and one hundred and twelve sequence tagged site (STS) markers were selected to construct the genetic linkage map of the DH population with a full length of 1808.3cM scanning 12 rice chromosomes. Quantitative trait loci (QTLs) were detected, and QTL effects and QTL interactions were calculated for five traits related to macro- and micro-elements in the DH population from a cross between 'Samgang' (Tongil) and 'Nagdong' (Japonica). Twelve QTLs were located on five chromosomes, consisting of two QTLs for potassium, three QTLs for calcium, two QTLs for magnesium, one QTL for iron content and four QTLs for the ratio of magnesium to potassium (Mg/K). Among them, qca1.1 was detected on chromosome 1 with an LOD value of 8.58 for calcium content. It explained 27% of phenotype variations with increasing effects from 'Samgang' allele. Furthermore, fifteen epistatic combinations with significant interactions were observed on ten chromosomes for five traits, which totally accounted for 4.19% to 12.72% of phenotype variations. The screening of relatively accurate QTLs will contribute to increase the efficiency of marker-assisted selection (MAS), and to accelerate the establishment of near-isogenic lines (NILs) and QTL pyramiding.

Assessment of Genetic Relationship among Watermelon Varieties Revealed by ISSR Marker (Inter-simple sequence repeat (ISSR) marker를 이용한 수박의 품종간 유연관계 분석)

  • Kwon Yong-Sham;Lee Won-Sik;Cho Il-Ho
    • Journal of Life Science
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    • v.16 no.2 s.75
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    • pp.219-224
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    • 2006
  • Inter-simple sequence repeat (ISSR) analysis were used to assess genetic diversity among 18 genotypes of watermelon (Citrullus lanatus Thunb.) including breeding lines and commercial varieties. The 21 ISSR primers selected from 100 primers were showed the amplification of 105 reproducible fragments ranging from about 200 bp to 5000 bp. A total of 58 DNA fragments were polymorphic with an average 2.7 polymorphic bands per primer. The polymorphic primers were divided into 18 anchored primers and 3 non anchored primers. All of the anchored primers were di-nucleotide repeat motif, and was more polymorphic than non anchored primers. Eighteen watermelon genotypes were classified into two large groups. Clustering was in some accordance with the division of fruit shape into 18 watermelon. Therefore, ISSR markers may be suitable for variety discrimination and for constructing a linkage map of watermelon.

Development and Molecular Characterization of Novel Polymorphic Genomic DNA SSR Markers in Lentinula edodes

  • Moon, Suyun;Lee, Hwa-Yong;Shim, Donghwan;Kim, Myungkil;Ka, Kang-Hyeon;Ryoo, Rhim;Ko, Han-Gyu;Koo, Chang-Duck;Chung, Jong-Wook;Ryu, Hojin
    • Mycobiology
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    • v.45 no.2
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    • pp.105-109
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    • 2017
  • Sixteen genomic DNA simple sequence repeat (SSR) markers of Lentinula edodes were developed from 205 SSR motifs present in 46.1-Mb long L. edodes genome sequences. The number of alleles ranged from 3-14 and the major allele frequency was distributed from 0.17-0.96. The values of observed and expected heterozygosity ranged from 0.00-0.76 and 0.07-0.90, respectively. The polymorphic information content value ranged from 0.07-0.89. A dendrogram, based on 16 SSR markers clustered by the paired hierarchical clustering' method, showed that 33 shiitake cultivars could be divided into three major groups and successfully identified. These SSR markers will contribute to the efficient breeding of this species by providing diversity in shiitake varieties. Furthermore, the genomic information covered by the markers can provide a valuable resource for genetic linkage map construction, molecular mapping, and marker-assisted selection in the shiitake mushroom.

Design and Implementation of B2Bi Collaboration Workflow System for Efficient Business Process Management based on J2EE (효율적인 비즈니스 프로세스 관리를 위한 J2EE 기반 B2Bi 협업 워크플로우 시스템 설계 및 구현)

  • Lee, Chang-Mog;Chang, Ok-Bae
    • The KIPS Transactions:PartD
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    • v.14D no.1 s.111
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    • pp.97-106
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    • 2007
  • In this paper, the business process was easily modeled by distinguishing between the business process and work logic. Based on this model, B2Bi collaboration Workflow modeling tool, which facilitates collaboration, was designed and implemented. The collaboration workflow modeling tool consists of 3 components; business process modeling tool, execution engine and monitoring tool. First, a business process modeling tool is used to build a process map that reflects the business logic of an application in a quick and accurate manner. Second an execution engine provides a real-time execution environment for business process instance. Third, a monitoring tool provides a real-time monitoring function for the business process that is in operation at the time. In addition to this, it supports flexibility and expandability based on XML and J2EE for the linkage with the legacy system that was used previously, and suggests a solution for a new corporate strategy and operation.

Gyeonggi21Search 2.0: A Geographic and Regional Information Retrieval System based on Correlated Keywords (연관 키워드 기반의 지리 및 지역정보 검색시스템 : "경기21서치 2.0")

  • Yun, Seong-Kwan;Lee, Ryong;Jang, Yong-Hee;Seong, Dong-Hyeon;Kwon, Yong-Jin
    • Spatial Information Research
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    • v.17 no.1
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    • pp.1-14
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    • 2009
  • Demands for a system which enable users to retrieve any kind of geographic and regional information over the Web have been increasing. However, in order to obtain geographic or regional information over the web, users still need to search web pages related to region by inputting keywords and to arrange the searched results with map. We can solve that problem by using the fact that most of geographic and regional information contain geographic keywords related to location. In this paper, we propose a system to retrieve geographic and regional information efficiently. For the purpose, we present a conceptual model based on three layers of "Real-World", "Knowledge", and "Applications", from the web space and construct the above link process. These layers are connected to each other and enable users to navigation information over the linkage. Especially, users can obtain various correlated information about geographic information and properties.

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A Study of Location Correction Algorithm for Pedestrian Location Tracking in Traffic Connective Transferring System (교통 연계 환승 시스템의 보행자 위치 추적을 위한 보정 알고리즘 연구)

  • Jung, Jong-In;Lee, Sang-Sun
    • The Journal of The Korea Institute of Intelligent Transport Systems
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    • v.8 no.2
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    • pp.149-157
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    • 2009
  • Tracking technologies which provide real-time and customized information through various information collecting and processing for pedestrians who use traffic connective and transferring center have been being examined. However some problems are caused due to the wide-range positioning error for some services as device installation and service place. It is also difficult to be applied to traffic linkage and transfer services because many situations can be barren. In the testbed, Gwangmyoung Station, we got some results in bad conditions such as a lot of steel construction and another communication device. Practically, conditions of the place which will be built can be worse than Gwangmyoung station. Therefore, we researched suitable Location correction algorithm as a method for accuracy to traffic connective and transferring system. And its algorithm is designed through grid coordinates, map-matching, modeling coordinates and Kalman filtering and is being implemented continuously. Also preparing for optimization of various transferring center model, we designed for simulator type algorithm what is available for deciding algorithm factor.

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Positional mapping for foxglove aphid resistance with 180k SNP array in soybean [Glycine max (L.) Merr.]

  • Park, Sumin;Kim, Kyung Hye;Go, Hong Min;Lee, Ju Seok;Jung, Jin Kyo;Bilyeu, Kristin D.;Lee, Jeong-Dong;Kan, Sungtaeg
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.145-145
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    • 2017
  • Foxglove aphid, Aulacorthum solani (Kaltenbach), is a Hemipteran insect that infected a wide variety of plants worldwide and caused serious yield losses in crops. The objective of this study was to identify the putative genes to foxglove aphid resistance in wild soybean, PI 366121 (Glycine soja Sieb. and Zucc.). One hundred and forty-one F4:8 recombinant inbred lines developed from a cross between susceptible variety, Williams 82 and foxglove aphid resistance wild soybean, PI 366121 were used. The two type of resistance response, antibiosis and antixenosis resistance were evaluated through choice and no-choice test, graded by the degree of total plant damage and primary infestation leaf damage; a genome-wide molecular linkage map was constructed with 29,898 single-nucleotide polymorphism markers utilizing a Axiom(R) 180K soyaSNP array. Using inclusive composite interval mapping analysis for foxglove aphid resistance, one major candidate QTL on chromosome 7 was identified. The major QTL on chromosome 7 showed both antixenosis and antibiosis resistance responses. The newly identified major QTL was consistent with previously reported QTL, Raso2, which showed around 5 times narrow down interval range with 8 candidate genes. Furthermore, total 1,115 soybean varieties including Glycine soja and Glycine max were exposed to germplasm screening, and 31 varieties, which showed significant antibiosis type foxglove aphid resistance were identified. This result could be useful in breeding for new foxglove aphid resistant soybean cultivars and developing novel insecticides.

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