• Title/Summary/Keyword: Linear Mixture Model

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Normal Mixture Model with General Linear Regressive Restriction: Applied to Microarray Gene Clustering

  • Kim, Seung-Gu
    • Communications for Statistical Applications and Methods
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    • v.14 no.1
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    • pp.205-213
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    • 2007
  • In this paper, the normal mixture model subjected to general linear restriction for component-means based on linear regression is proposed, and its fitting method by EM algorithm and Lagrange multiplier is provided. This model is applied to gene clustering of microarray expression data, which demonstrates it has very good performances for real data set. This model also allows to obtain the clusters that an analyst wants to find out in the fashion that the hypothesis for component-means is represented by the design matrices and the linear restriction matrices.

Optimal Restrictions on Regression Parameters For Linear Mixture Model

  • Ahn, Jung-Yeon;Park, Sung-Hyun
    • Journal of the Korean Statistical Society
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    • v.28 no.3
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    • pp.325-336
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    • 1999
  • Collinearity among independent variables can have severe effects on the precision of response estimation for some region of interest in the experiments with mixture. A method of finding optimal linear restriction on regression parameter in linear model for mixture experiments in the sense of minimizing integrated mean squared error is studied. We use the formulation of optimal restrictions on regression parameters for estimating responses proposed by Park(1981) by transforming mixture components to mathematically independent variables.

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Error Analysis of Linear Mixture Model using Laboratory Spectral Measurements (실내 분광 측정자료를 이용한 선형혼합모델의 오차 분석)

  • Kim, Sun-Hwa;Shin, Jung-Il;Shin, Sang-Min;Lee, Kyu-Sung
    • Korean Journal of Remote Sensing
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    • v.23 no.6
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    • pp.537-546
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    • 2007
  • In hyperspectral remote sensing, linear spectral mixture model is a common procedure decomposing into the components of a mixed pixel and estimating the fraction of each end-member. Although linear spectral mixture model is frequently used in geology and mineral mapping because this model is simple and easy to apply, this model is not always valid in forest and urban area having rather complex structure. This study aims to analyze possible error for applying linear spectral mixture model. For the study, we measured laboratory spectra of mixture sample, having various materials, fractions, distributions. The accuracy of linear mixture model is low with the mixture sample having similar fraction because the multi-scattering between components is maximum. Additionally, this multi-scattering is related to the types, fraction, and distribution of components. Further analysis is necessary to quantify errors from linear spectral mixture model.

OPTIMAL RESTRICTIONS ON REGRESSION PARAMETERS FOR LINEAR MIXTURE MODEL

  • Park, Sung-Hyun;Ahn, Jung-Yeon
    • Proceedings of the Korean Society for Quality Management Conference
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    • 1998.11a
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    • pp.239-250
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    • 1998
  • A method of finding optimal linear restriction on regression parameters in linear model for mixture experiments in the sense of minimizing integrated mean squared error is studied. We use the formulation of optimal restrictions on regression parameters for estimating responses proposed by Park(1981) by transforming mixture components to mathematically independent variables.

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A Multivariate Mixture of Linear Failure Rate Distribution in Reliability Models

  • EI-Gohary A wad
    • International Journal of Reliability and Applications
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    • v.6 no.2
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    • pp.101-115
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    • 2005
  • This article provides a new class of multivariate linear failure rate distributions where every component is a mixture of linear failure rate distribution. The new class includes several multivariate and bivariate models including Marslall and Olkin type. The approach in this paper is based on the introducing a linear failure rate distributed latent random variable. The distribution of minimum in a competing risk model is discussed.

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Use of Factor Analyzer Normal Mixture Model with Mean Pattern Modeling on Clustering Genes

  • Kim Seung-Gu
    • Communications for Statistical Applications and Methods
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    • v.13 no.1
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    • pp.113-123
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    • 2006
  • Normal mixture model(NMM) frequently used to cluster genes on microarray gene expression data. In this paper some of component means of NMM are modelled by a linear regression model so that its design matrix presents the pattern between sample classes in microarray matrix. This modelling for the component means by given design matrices certainly has an advantage that we can lead the clusters that are previously designed. However, it suffers from 'overfitting' problem because in practice genes often are highly dimensional. This problem also arises when the NMM restricted by the linear model for component-means is fitted. To cope with this problem, in this paper, the use of the factor analyzer NMM restricted by linear model is proposed to cluster genes. Also several design matrices which are useful for clustering genes are provided.

A Study of HME Model in Time-Course Microarray Data

  • Myoung, Sung-Min;Kim, Dong-Geon;Jo, Jin-Nam
    • The Korean Journal of Applied Statistics
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    • v.25 no.3
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    • pp.415-422
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    • 2012
  • For statistical microarray data analysis, clustering analysis is a useful exploratory technique and offers the promise of simultaneously studying the variation of many genes. However, most of the proposed clustering methods are not rigorously solved for a time-course microarray data cluster and for a fitting time covariate; therefore, a statistical method is needed to form a cluster and represent a linear trend of each cluster for each gene. In this research, we developed a modified hierarchical mixture of an experts model to suggest clustering data and characterize each cluster using a linear mixed effect model. The feasibility of the proposed method is illustrated by an application to the human fibroblast data suggested by Iyer et al. (1999).

Variable Selection in Linear Random Effects Models for Normal Data

  • Kim, Hea-Jung
    • Journal of the Korean Statistical Society
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    • v.27 no.4
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    • pp.407-420
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    • 1998
  • This paper is concerned with selecting covariates to be included in building linear random effects models designed to analyze clustered response normal data. It is based on a Bayesian approach, intended to propose and develop a procedure that uses probabilistic considerations for selecting premising subsets of covariates. The approach reformulates the linear random effects model in a hierarchical normal and point mass mixture model by introducing a set of latent variables that will be used to identify subset choices. The hierarchical model is flexible to easily accommodate sign constraints in the number of regression coefficients. Utilizing Gibbs sampler, the appropriate posterior probability of each subset of covariates is obtained. Thus, In this procedure, the most promising subset of covariates can be identified as that with highest posterior probability. The procedure is illustrated through a simulation study.

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Dirichlet Process Mixtures of Linear Mixed Regressions

  • Kyung, Minjung
    • Communications for Statistical Applications and Methods
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    • v.22 no.6
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    • pp.625-637
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    • 2015
  • We develop a Bayesian clustering procedure based on a Dirichlet process prior with cluster specific random effects. Gibbs sampling of a normal mixture of linear mixed regressions with a Dirichlet process was implemented to calculate posterior probabilities when the number of clusters was unknown. Our approach (unlike its counterparts) provides simultaneous partitioning and parameter estimation with the computation of the classification probabilities. A Monte Carlo study of curve estimation results showed that the model was useful for function estimation. We find that the proposed Dirichlet process mixture model with cluster specific random effects detects clusters sensitively by combining vague edges into different clusters. Examples are given to show how these models perform on real data.

Bayesian Pattern Mixture Model for Longitudinal Binary Data with Nonignorable Missingness

  • Kyoung, Yujung;Lee, Keunbaik
    • Communications for Statistical Applications and Methods
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    • v.22 no.6
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    • pp.589-598
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    • 2015
  • In longitudinal studies missing data are common and require a complicated analysis. There are two popular modeling frameworks, pattern mixture model (PMM) and selection models (SM) to analyze the missing data. We focus on the PMM and we also propose Bayesian pattern mixture models using generalized linear mixed models (GLMMs) for longitudinal binary data. Sensitivity analysis is used under the missing not at random assumption.