• Title/Summary/Keyword: Length of runs

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Genome-wide scan for runs of homozygosity identifies candidate genes in Wannan Black pigs

  • Wu, Xudong;Zhou, Ren;Zhang, Wei;Cao, Bangji;Xia, Jing;Wang, Caiyun;Zhang, Xiaodong;Chu, Mingxing;Yin, Zongjun;Ding, Yueyun
    • Animal Bioscience
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    • v.34 no.12
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    • pp.1895-1902
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    • 2021
  • Objective: Runs of homozygosity (ROH) are contiguous lengths of homozygous genotypes that can reveal inbreeding levels, selection pressure, and mating schemes. In this study, ROHs were evaluated in Wannan Black pigs to assess the inbreeding levels and the genome regions with high ROH frequency. Methods: In a previous study, we obtained 501.52 GB of raw data from resequencing (10×) of the genome and identified 21,316,754 single-nucleotide variants in 20 Wannan Black pig samples. We investigated the number, length, and frequency of ROH using resequencing data to characterize the homozygosity in Wannan Black pigs and identified genomic regions with high ROH frequencies. Results: In this work, 1,813 ROHs (837 ROHs in 100 to 500 kb, 449 ROHs in 500 to 1,000 kb, 527 ROHs in >1,000 kb) were identified in all samples, and the average genomic inbreeding coefficient (FROH) in Wannan Black pigs was 0.5234. Sixty-one regions on chromosomes 2, 3, 7, 8, 13, 15, and 16 harbored ROH islands. In total, 105 genes were identified in 42 ROH islands, among which some genes were related to production traits. Conclusion: This is the first study to identify ROH across the genome of Wannan Black pigs, the Chinese native breed of the Anhui province. Overall, Wannan Black pigs have high levels of inbreeding due to the influence of ancient and recent inbreeding due to the genome. These findings are a reliable resource for future studies and contribute to save and use the germplasm resources of Wannan Black pigs.

Development of Computer Vision System for Individual Recognition and Feature Information of Cow (I) - Individual recognition using the speckle pattern of cow - (젖소의 개체인식 및 형상 정보화를 위한 컴퓨터 시각 시스템 개발 (I) - 반문에 의한 개체인식 -)

  • 이종환
    • Journal of Biosystems Engineering
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    • v.27 no.2
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    • pp.151-160
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    • 2002
  • Cow image processing technique would be useful not only for recognizing an individual but also for establishing the image database and analyzing the shape of cows. A cow (Holstein) has usually the unique speckle pattern. In this study, the individual recognition of cow was carried out using the speckle pattern and the content-based image retrieval technique. Sixty cow images of 16 heads were captured under outdoor illumination, which were complicated images due to shadow, obstacles and walking posture of cow. Sixteen images were selected as the reference image for each cow and 44 query images were used for evaluating the efficiency of individual recognition by matching to each reference image. Run-lengths and positions of runs across speckle area were calculated from 40 horizontal line profiles for ROI (region of interest) in a cow body image after 3 passes of 5$\times$5 median filtering. A similarity measure for recognizing cow individuals was calculated using Euclidean distance of normalized G-frame histogram (GH). normalized speckle run-length (BRL), normalized x and y positions (BRX, BRY) of speckle runs. This study evaluated the efficiency of individual recognition of cow using Recall(Success rate) and AVRR(Average rank of relevant images). Success rate of individual recognition was 100% when GH, BRL, BRX and BRY were used as image query indices. It was concluded that the histogram as global property and the information of speckle runs as local properties were good image features for individual recognition and the developed system of individual recognition was reliable.

A Study of the PDCA and CAPD Economic Designs of the $\bar{x}$ Control Chart

  • Sun, Jing;Tsubaki, Michiko;Matsui, Masayuki
    • Industrial Engineering and Management Systems
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    • v.6 no.1
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    • pp.11-21
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    • 2007
  • The PDCA (Plan, Do, Check and Act) cycle is often used in the field of quality management. Recently, business environments have become more competitive, and the due time of products has shortened. In a short production run process, to increase efficiency of management, the necessity for distinguishing the PDCA design that starts with PLAN and the CAPD design that starts with CHECK has been clarified. Starting from Duncan (1956), there have been a number of papers dealing with the economic design of control charts from the viewpoint of production run. Some authors (Gibra, 1971; Ladany and Bedi, 1976; etc.) have studied the economic design for finite-length runs; other authors (Crowder, 1992; Del Castillo and Montgomery, 1996; etc.) have studied the economic design for short runs. However, neither the PDCA nor the CAPD design of control charts has been considered. In this paper, both the PDCA and CAPD designs of the $\bar{\x}$ chart are defined based on Del Castillo and Montgomery's design (1996), and their mathematical formulations are shown. Then from an economic viewpoint, the optimal values of the sample size per each sampling, control limits width, and the sampling interval of the two designs are studied. Finally, by numerically analyzing the relations between the key parameters and the total expected cost per unit time, the comparisons between the two designs are considered in detail.

A Study on Operational Characteristics of DC protective relay systems on the Subway (지하철 직류보호계전시스템의 동작특성에 관한 연구)

  • Jung, Hyun-Ki;Jung, Jong-Jin;An, Tae-Pung
    • Proceedings of the KSR Conference
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    • 2008.06a
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    • pp.451-465
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    • 2008
  • The DC over current relay(76i) and the DC under voltage relay(mid-point relay, 80A) used mainly with DC protective relay system of DC electric railway in Korea, But the DC fault selective relay(50F) is applying to recently mainly. In this study, simulation to compare 76i/80A and 50F in the methods of protection and the operational characteristics were executed through verifying a calculation of short circuit current and using PSCAD/EMTDC transition program. As a result of this study, it was proved that while 80A runs in relation to the scale of fault resistance, 50F runs regardless of the scale of fault resistance or the length of rail.

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Forced Oscillation Wind Tunnel Test of a 50m Length Airship (50M급 비행선의 강제진동 풍동시험)

  • Chang,Byeong-Hee;Lee,Yung-Gyo;Ok,Ho-Nam
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.31 no.6
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    • pp.17-22
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    • 2003
  • An airship is statically unstable, because it has no wing, relatively small tails and a large hull. Hence, an accurate prediction of dynamic stability is critical. In this study, dynamic stability data of the 50m Length Airship were acquired through forced oscillation wind tunnel tests. The tests were done in Birhle Applied Research Inc's Lange Amplitude Multi-Purpose(BAR LAMP) Facility located in Germany. The tests were composed with 16 static runs and 26 dynamic runs. As results, it is obtained that dynamic characteristics of the airship depend on the sideslip angle, the angular rate and its direction as well as the angle of attack. Generally, three directional moments have damping, but the normal force, the side force, and the cross-derivatives are unstable. The dynamic derivatives are not sensitive to the control surfaces, but nonlinear to the sideslip angle.

Statistical Design of CV Control Charts witn Approximate Distribution (근사분포를 이용한 CV 관리도의 통계적 설계)

  • Lee Man-Sik;Kang Chang-Wook;Sim Seong-Bo
    • Journal of Korean Society of Industrial and Systems Engineering
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    • v.27 no.3
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    • pp.14-20
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    • 2004
  • The coefficient of variation(CV) which is a relatively dimensionless measure of variability is widely used to describe the variation of sample data. However, the properties of CV distribution are little available and few research has been done on estimation and interpretation of CV. In this paper, we give an outline of statistical properties of coefficient of variation and design of control chart based on this statistic. Construction procedures of control chart are presented. The proposed control chart is an efficient method to monitor a process variation for short production run situation. Futhermore, we evaluated the performance of CV control chart by average run length(ARL).

Interaction Effect of Network Structure and Knowledge Search on Knowledge Diffusion (지식 전파에 있어 네트워크 구조와 지식 탐색의 상호작용)

  • Park, Chulsoon
    • Korean Management Science Review
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    • v.32 no.4
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    • pp.81-96
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    • 2015
  • This paper models knowledge diffusion on an inter-organizational network. Based on literatures related to knowledge diffusion, the model considers critical factors that affect diffusion behavior including nodal property, relational property, and environmental property. We examine the relationships among network structure, knowledge search, and diffusion performance. Through a massive simulation runs based on the agent-based model, we find that the average path length of a network decreases a firm's cumulative knowledge stock, whereas the clustering coefficient of a firm has no significant relationship with the firm's knowledge. We also find that there is an interaction effect of network structure and the range of knowledge search on knowledge diffusion. Specifically, in a network of a larger average path length (APL) the marginal effect of search conduct is significantly greater than in that of a smaller APL.

A Comparison of Accuracy Between a Turbine and an Orifice Meter in the Field (현장여건에 따른 터빈 유량계와 오리피스 유량계의 정확도 비교)

  • An, Seung-Hee;Her, Jae-Young
    • 유체기계공업학회:학술대회논문집
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    • 1999.12a
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    • pp.97-105
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    • 1999
  • Orifice flow meters are frequently used for measuring gas flow in gas industry. However, to insure the accuracy of the measurement, a certain length of the meter run at the upstream of the flow meter is required. The objective of this study is to analyze flow measurement errors of the orifice flow meter quantitatively for shorter lengths of the meter runs than those suggested in the standard manuals with variation of diameter ratio( $\beta$ ratio) and flow rate. The test results showed that the flow measurement errors of the orifice meter were inversely proportional to the diameter ratio. In other words, when the diameter ratio is 0.3 and 0.7, the measurement error is $-7.3\%$ and $-3.5\%$, respectively. the main reason of the measurement error is due to the swirl effect from the configuration of the meter run at the upstream of the flow meter. In case the length of the meter run is shorter than that suggested in the standard manuals, the swirl effect is not removed completely and it affects the flow meter's performance. As mentioned above, the less the pipe diameter ratio, the more the flow measurement error. It means that the swirl effect on the orifice meter increases as the $\beta$ ratio decreases.

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A Study on Accalerated Vocous Condition in Siphon Spillway (싸이폰식 여수토의 진공촉진에 대한 연구)

  • 김시원
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.6 no.2
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    • pp.816-825
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    • 1964
  • 1. Outline: The flow of the siphon spillway is very intricate and affected by vacuous condition. It is an intresting problem to make vacuum rapidly in_siphon, i.e, to provoke the perfect siphonaoge with the lowest water-level of overflow. The hydraulic experiments of siphon spillway have practiced at the Masan Lake, Haenam, the province of Junnam and gained rational and economical results which cannot be odtained by calculation. 2. Experiment: The model scale was a half of that of the prototype. 3. Results and discussion: In the experiments of 14 runs, washing, overflow water level, outlet, water level of cushion, phenomenon of water flying and water pressure of every part, etc. were studied. a) The relation of overflow water-level at siphon inlet and deflector When the elevation of the deflector is 10. 65m and the form of deflector O.4m long is the hypotenuse of an $45^{\circ}$ isosceles triangle, the over flow water-level is the minimum, i. e. the siphonage was excellent. There is no effect by the rising of overflow water-Ievel between 11.95m to 1O.65m of deflector elevation (in the first plan, it is 11.05m). But the overflow water-level rises remarkably in the outside region of the above limits. b) The relation of overflow water-level, the length of cushion and standard height of the base. The reduction of the length of cushion brings the rising of overflow waterlevel, and the rising of the standard height of the base brings the rising of overflow water level. For the long cushion length and low standard height of the base, it cannot be expeted to have the falling of overflow water-level. The most satisfactory data were obtained at 5.20m of the base standard height and 6.1m of the length of cushion. The first vah,le planned was 5.70 m and 4.30m.

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A Study on the Optimum Design of Warm-up rate in a Air-Heated Heater System by Using CFD Analysis and Taguchi Method (전산유체해석과 다구찌 방법을 연계한 공기 가열식 히터 시스템의 난방속효성 최적화에 관한 연구)

  • Kim, Min-Ho
    • Transactions of the Korean Society of Automotive Engineers
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    • v.13 no.2
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    • pp.72-82
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    • 2005
  • The objective of this paper is to describe the optimization of design parameters in a large-sized commercial bus heater system by using CFD(computational fluid dynamics) analysis and Taguchi method. In order to obtain the best combination of each control factor which results in a desired performance of heater system, the parameter design of the Taguchi method is adopted for the robust design considering the dynamic characteristic. The research activity may be divided into four phases. The first one is analyzing the problem, i.e., ascertaining the influential factors. In the second phase the levels were set in such a way that their variation would significantly influence the response. In the third phase the experimental runs were designed. In the final phase the planned runs were carried out numerically to evaluate the optimal combination of factors which is able to provide the best response. In this study, eight factors were considered for the analysis: one with two level and seven with three level combinations comprising the $L_{18}(2^1{\times}3^7)$ orthogonal array. The results of this study can be summarized as follows ; (i)The optimum condition of control factor is a set of <$A_2\;B_1\;C_3\;D_3\;E_1\;F_2\;G_3\;H_2$> where A is shape of the outer fin, B is pitch of the outer fin, C is height of the outer fin, D is the inner fin number, E is the inner fin height, F is length of the flame guide, G is diameter of the heating element and H is clearance between air guide and heating element. (ii)The heat capacity of heated discharge air under the optimum condition satisfies the equation y=0.6M w here M is a signal factor. (iii)The warm-up rate improves about three times, more largely as com pared with the current condition, which results in about 9.2minutes reduction.